Wall clock time and date at job start Mon Mar 30 2020 03:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86801 * 119.99729 * 2 1 4 4 H 1.48502 * 109.47205 * 274.96243 * 3 2 1 5 5 H 1.48505 * 109.47118 * 34.95994 * 3 2 1 6 6 H 1.48491 * 109.47232 * 154.96011 * 3 2 1 7 7 C 1.39885 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00072 * 163.98149 * 7 2 1 9 9 C 1.41029 * 119.99775 * 343.97308 * 7 2 1 10 10 C 1.40664 * 120.27024 * 333.63099 * 9 7 2 11 11 C 1.38007 * 119.76885 * 180.02562 * 10 9 7 12 12 N 1.39850 * 119.83540 * 180.02562 * 11 10 9 13 13 C 1.39594 * 120.32309 * 0.02562 * 11 10 9 14 14 C 1.50701 * 119.72515 * 180.02562 * 13 11 10 15 15 F 1.39907 * 109.47007 * 179.97438 * 14 13 11 16 16 F 1.39896 * 109.47043 * 299.97579 * 14 13 11 17 17 F 1.39895 * 109.47106 * 59.97893 * 14 13 11 18 18 C 1.38058 * 120.54948 * 359.97438 * 13 11 10 19 19 C 1.38740 * 120.21923 * 359.97438 * 18 13 11 20 20 N 1.38868 * 120.16146 * 179.74494 * 19 18 13 21 21 H 0.96997 * 120.00447 * 0.02562 * 1 2 3 22 22 H 1.08002 * 120.11277 * 0.03546 * 10 9 7 23 23 H 0.97007 * 120.00245 * 179.97438 * 12 11 10 24 24 H 0.97002 * 120.00438 * 359.96679 * 12 11 10 25 25 H 1.08000 * 119.88898 * 180.02562 * 18 13 11 26 26 H 0.97000 * 119.99574 * 359.97438 * 20 19 18 27 27 H 0.97000 * 120.00079 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.3855 2.1071 -1.3948 5 1 1.4967 2.6202 0.8023 6 1 3.5889 1.4123 0.5925 7 6 2.0085 -1.2114 0.0005 8 1 3.0570 -1.2296 -0.2575 9 6 1.3445 -2.4089 0.3383 10 6 0.2153 -2.3813 1.1767 11 6 -0.4262 -3.5594 1.5009 12 7 -1.5493 -3.5336 2.3339 13 6 0.0404 -4.7766 1.0016 14 6 -0.6708 -6.0549 1.3639 15 9 -0.0281 -7.1360 0.7511 16 9 -0.6471 -6.2243 2.7523 17 9 -1.9974 -5.9911 0.9244 18 6 1.1474 -4.8190 0.1777 19 6 1.8090 -3.6483 -0.1637 20 7 2.9255 -3.6928 -0.9882 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1484 -1.4415 1.5651 23 1 -2.0023 -4.3602 2.5631 24 1 -1.8753 -2.6892 2.6826 25 1 1.4990 -5.7666 -0.2030 26 1 3.2448 -4.5440 -1.3266 27 1 3.3865 -2.8729 -1.2251 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575721452.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:51:56 Heat of formation + Delta-G solvation = -141.719873 kcal Electronic energy + Delta-G solvation = -17979.033488 eV Core-core repulsion = 14513.685255 eV Total energy + Delta-G solvation = -3465.348233 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -49.31371 -46.84830 -46.76193 -38.11109 -34.74977 -33.74217 -31.28880 -30.10245 -26.70397 -26.10894 -23.49445 -21.27720 -20.16171 -17.87810 -17.63139 -17.32791 -17.17651 -16.14022 -15.22221 -14.95282 -14.83262 -13.99806 -13.73081 -13.69906 -13.27436 -13.00948 -12.98982 -12.61902 -12.47666 -12.18580 -12.14117 -11.42795 -11.26937 -11.04410 -10.60140 -10.40503 -10.15743 -9.69570 -9.28999 -8.20263 -7.55740 -6.89301 -5.81530 -4.38157 2.54534 3.01333 3.01532 3.07725 3.27398 3.67852 3.83997 4.47255 4.84872 4.98613 5.09218 5.29316 5.38199 5.70091 6.21617 6.84239 6.89433 7.05851 7.19882 7.36199 7.59262 7.67375 7.90875 8.19703 8.57415 8.60718 8.69213 8.81387 9.03718 9.10190 10.07778 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.035328 B = 0.007497 C = 0.006531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.377210 B = 3733.750109 C = 4286.443586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.781 5.781 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.451 4.451 8 H 0.079 0.921 9 C 0.122 3.878 10 C -0.225 4.225 11 C 0.242 3.758 12 N -0.891 5.891 13 C -0.337 4.337 14 C 0.518 3.482 15 F -0.193 7.193 16 F -0.197 7.197 17 F -0.196 7.196 18 C -0.117 4.117 19 C 0.089 3.911 20 N -0.886 5.886 21 H 0.281 0.719 22 H 0.125 0.875 23 H 0.381 0.619 24 H 0.391 0.609 25 H 0.100 0.900 26 H 0.378 0.622 27 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.174 -3.416 1.444 3.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.480 4.480 8 H 0.097 0.903 9 C 0.116 3.884 10 C -0.250 4.250 11 C 0.139 3.861 12 N -0.432 5.432 13 C -0.344 4.344 14 C 0.464 3.536 15 F -0.175 7.175 16 F -0.179 7.179 17 F -0.178 7.178 18 C -0.142 4.142 19 C -0.012 4.012 20 N -0.429 5.429 21 H 0.092 0.908 22 H 0.143 0.857 23 H 0.208 0.792 24 H 0.218 0.782 25 H 0.118 0.882 26 H 0.203 0.797 27 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -0.064 -3.258 1.449 3.566 hybrid contribution 0.086 0.486 -0.013 0.494 sum 0.023 -2.772 1.436 3.122 Atomic orbital electron populations 1.69868 1.07515 1.29256 1.33952 1.25893 0.94778 1.01286 0.92389 0.86291 0.80714 0.80665 0.79045 1.19591 1.20011 1.18408 1.19328 0.97231 0.90996 1.40479 0.90301 1.17157 0.91656 0.90409 0.89162 1.20376 1.02534 0.94848 1.07207 1.17118 0.86733 0.92646 0.89642 1.42461 1.33028 1.10208 1.57505 1.18248 1.07391 0.88507 1.20300 1.18522 0.76367 0.85297 0.73393 1.93044 1.81889 1.59222 1.83346 1.93111 1.96398 1.96283 1.32072 1.93116 1.38520 1.96670 1.89492 1.19354 0.96987 0.95830 1.02031 1.17658 0.92322 0.93301 0.97910 1.41767 1.33134 1.09470 1.58512 0.90789 0.85711 0.79171 0.78218 0.88180 0.79693 0.78084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.08 10.97 55.54 0.61 -18.47 15 2 C 0.08 1.78 5.16 -17.33 -0.09 1.69 15 3 Si 0.91 17.52 29.59 -169.99 -5.03 12.49 15 4 H -0.27 -5.18 7.11 56.52 0.40 -4.78 15 5 H -0.28 -5.25 7.11 56.52 0.40 -4.85 15 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.45 -11.00 8.48 -37.91 -0.32 -11.32 15 8 H 0.08 1.80 6.70 -52.49 -0.35 1.45 15 9 C 0.12 3.06 5.57 -106.66 -0.59 2.46 15 10 C -0.22 -5.59 8.49 -38.75 -0.33 -5.92 15 11 C 0.24 5.58 6.64 -83.78 -0.56 5.02 15 12 N -0.89 -17.24 8.83 32.41 0.29 -16.96 15 13 C -0.34 -7.66 5.40 -104.18 -0.56 -8.22 15 14 C 0.52 10.58 2.80 36.01 0.10 10.68 15 15 F -0.19 -3.82 15.94 2.25 0.04 -3.78 15 16 F -0.20 -3.86 16.22 2.25 0.04 -3.82 15 17 F -0.20 -3.92 16.22 2.25 0.04 -3.88 15 18 C -0.12 -2.63 9.24 -39.46 -0.36 -2.99 15 19 C 0.09 2.06 6.79 -83.22 -0.56 1.49 15 20 N -0.89 -17.01 8.98 32.75 0.29 -16.71 15 21 H 0.28 6.26 8.30 -40.82 -0.34 5.92 15 22 H 0.13 3.17 6.23 -52.49 -0.33 2.85 15 23 H 0.38 6.90 6.21 -40.82 -0.25 6.65 15 24 H 0.39 6.81 8.83 -40.82 -0.36 6.45 15 25 H 0.10 2.06 7.12 -52.49 -0.37 1.69 15 26 H 0.38 6.15 8.83 -40.82 -0.36 5.79 15 27 H 0.39 7.22 7.05 -40.82 -0.29 6.94 15 LS Contribution 245.91 15.07 3.71 3.71 Total: -1.00 -26.25 245.91 -4.76 -31.00 By element: Atomic # 1 Polarization: 24.97 SS G_CDS: -1.45 Total: 23.52 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -3.28 Total: -7.10 kcal Atomic # 7 Polarization: -53.32 SS G_CDS: 1.19 Total: -52.13 kcal Atomic # 9 Polarization: -11.60 SS G_CDS: 0.11 Total: -11.49 kcal Atomic # 14 Polarization: 17.52 SS G_CDS: -5.03 Total: 12.49 kcal Total LS contribution 3.71 Total: 3.71 kcal Total: -26.25 -4.76 -31.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575721452.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.715 kcal (2) G-P(sol) polarization free energy of solvation -26.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds