Wall clock time and date at job start Mon Mar 30 2020 03:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86792 * 120.00264 * 2 1 4 4 H 1.48500 * 109.47267 * 269.99770 * 3 2 1 5 5 H 1.48498 * 109.47373 * 30.00217 * 3 2 1 6 6 H 1.48506 * 109.46986 * 149.99870 * 3 2 1 7 7 C 1.39914 * 119.99128 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99520 * 170.02251 * 7 2 1 9 9 C 1.41420 * 120.00777 * 350.02022 * 7 2 1 10 10 C 1.40654 * 120.16906 * 325.58467 * 9 7 2 11 11 C 1.38334 * 119.82582 * 179.97438 * 10 9 7 12 12 N 1.39670 * 119.91724 * 179.97438 * 11 10 9 13 13 C 1.39199 * 120.16981 * 0.02562 * 11 10 9 14 14 C 1.39150 * 120.35137 * 359.97333 * 13 11 10 15 15 N 1.39676 * 119.91334 * 180.02562 * 14 13 11 16 16 C 1.38381 * 120.17494 * 0.02875 * 14 13 11 17 17 C 1.50698 * 120.09029 * 180.02562 * 16 14 13 18 18 F 1.39898 * 109.47237 * 33.98672 * 17 16 14 19 19 F 1.39895 * 109.47175 * 153.99081 * 17 16 14 20 20 F 1.39900 * 109.46565 * 273.99076 * 17 16 14 21 21 H 0.97003 * 119.99418 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.08821 * 0.25041 * 10 9 7 23 23 H 0.96999 * 120.00057 * 0.02562 * 12 11 10 24 24 H 0.97007 * 119.99969 * 179.97438 * 12 11 10 25 25 H 1.08003 * 119.82370 * 179.97438 * 13 11 10 26 26 H 0.97005 * 120.00068 * 15.06829 * 15 14 13 27 27 H 0.97001 * 120.00107 * 195.07303 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4400 2.6526 0.7001 6 1 3.5400 1.4400 0.7001 7 6 2.0078 -1.2118 0.0005 8 1 3.0756 -1.2190 -0.1615 9 6 1.3167 -2.4272 0.2133 10 6 0.2123 -2.4694 1.0832 11 6 -0.4589 -3.6619 1.2857 12 7 -1.5555 -3.7061 2.1496 13 6 -0.0434 -4.8183 0.6316 14 6 1.0483 -4.7848 -0.2306 15 7 1.4570 -5.9504 -0.8826 16 6 1.7302 -3.5996 -0.4437 17 6 2.9118 -3.5654 -1.3782 18 9 2.7020 -4.4653 -2.4285 19 9 3.0613 -2.2735 -1.8939 20 9 4.0693 -3.9255 -0.6798 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1137 -1.5721 1.5883 23 1 -1.8459 -2.9012 2.6063 24 1 -2.0272 -4.5417 2.2922 25 1 -0.5712 -5.7464 0.7942 26 1 0.8681 -6.7206 -0.9137 27 1 2.3297 -5.9898 -1.3042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575721888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:04 Heat of formation + Delta-G solvation = -131.086198 kcal Electronic energy + Delta-G solvation = -18382.635168 eV Core-core repulsion = 14917.748046 eV Total energy + Delta-G solvation = -3464.887122 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -48.98753 -46.56600 -46.33196 -38.06671 -34.51818 -34.16524 -31.70116 -28.77106 -27.75695 -25.54514 -23.50268 -21.05945 -20.34421 -17.62919 -17.43395 -17.30354 -16.58741 -16.14253 -15.58472 -15.13550 -14.63576 -13.67709 -13.41567 -13.35426 -12.95866 -12.88261 -12.69870 -12.61407 -12.46149 -12.16464 -12.00207 -11.39923 -11.09162 -10.74315 -10.49586 -10.33518 -9.97973 -9.62198 -9.24872 -8.34488 -6.87995 -6.74331 -6.26840 -4.45025 2.79486 3.03307 3.10985 3.16879 3.29052 3.98182 4.03170 4.65496 4.68374 4.96531 5.39357 5.44842 5.47943 5.90711 6.41084 6.78994 6.98875 7.05902 7.19919 7.48099 7.48980 7.77247 8.05011 8.27331 8.34569 8.60016 8.68633 8.81987 8.87534 8.93593 10.23905 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.012618 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.088639 B = 2218.590382 C = 3415.164583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.079 3.921 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.260 1.260 7 C -0.455 4.455 8 H 0.086 0.914 9 C 0.207 3.793 10 C -0.261 4.261 11 C 0.264 3.736 12 N -0.888 5.888 13 C -0.357 4.357 14 C 0.304 3.696 15 N -0.892 5.892 16 C -0.386 4.386 17 C 0.523 3.477 18 F -0.202 7.202 19 F -0.170 7.170 20 F -0.205 7.205 21 H 0.279 0.721 22 H 0.116 0.884 23 H 0.390 0.610 24 H 0.383 0.617 25 H 0.094 0.906 26 H 0.386 0.614 27 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.248 -4.586 0.604 4.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C -0.139 4.139 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.184 1.184 7 C -0.485 4.485 8 H 0.104 0.896 9 C 0.202 3.798 10 C -0.287 4.287 11 C 0.161 3.839 12 N -0.427 5.427 13 C -0.384 4.384 14 C 0.200 3.800 15 N -0.435 5.435 16 C -0.394 4.394 17 C 0.469 3.531 18 F -0.184 7.184 19 F -0.151 7.151 20 F -0.187 7.187 21 H 0.090 0.910 22 H 0.134 0.866 23 H 0.217 0.783 24 H 0.209 0.791 25 H 0.112 0.888 26 H 0.213 0.787 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 0.134 -4.359 0.546 4.395 hybrid contribution 0.221 0.409 -0.204 0.508 sum 0.355 -3.950 0.342 3.980 Atomic orbital electron populations 1.69849 1.07397 1.29021 1.35276 1.25847 0.94784 1.01094 0.92183 0.86293 0.80554 0.80492 0.79328 1.19385 1.20209 1.18397 1.19783 0.96250 0.90214 1.42205 0.89568 1.16691 0.88831 0.89619 0.84625 1.20402 1.03980 0.95215 1.09062 1.17443 0.85593 0.93616 0.87266 1.42385 1.34818 1.12719 1.52750 1.19227 1.07832 0.97100 1.14190 1.16752 0.91182 0.84238 0.87802 1.42745 1.21575 1.14354 1.64821 1.19189 1.07478 0.96838 1.15915 1.18377 0.83211 0.72627 0.78856 1.92946 1.95158 1.68824 1.61427 1.93163 1.96085 1.37991 1.87830 1.93111 1.54237 1.91946 1.79401 0.91033 0.86576 0.78316 0.79100 0.88824 0.78715 0.77859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.20 11.19 55.55 0.62 -19.58 15 2 C 0.08 1.99 5.23 -17.35 -0.09 1.89 15 3 Si 0.91 18.98 29.57 -169.99 -5.03 13.95 15 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 15 5 H -0.28 -5.58 7.11 56.52 0.40 -5.18 15 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 15 7 C -0.45 -12.06 7.02 -37.74 -0.26 -12.32 15 8 H 0.09 2.27 6.41 -52.48 -0.34 1.94 15 9 C 0.21 5.48 5.46 -106.88 -0.58 4.89 15 10 C -0.26 -6.57 8.46 -38.64 -0.33 -6.89 15 11 C 0.26 5.87 6.74 -83.89 -0.57 5.31 15 12 N -0.89 -15.45 9.09 32.36 0.29 -15.16 15 13 C -0.36 -7.71 9.76 -38.89 -0.38 -8.09 15 14 C 0.30 6.79 6.64 -83.89 -0.56 6.23 15 15 N -0.89 -16.15 8.41 32.36 0.27 -15.88 15 16 C -0.39 -9.54 5.52 -103.67 -0.57 -10.11 15 17 C 0.52 12.08 2.82 36.00 0.10 12.19 15 18 F -0.20 -4.24 14.38 2.25 0.03 -4.20 15 19 F -0.17 -4.14 13.79 2.25 0.03 -4.11 15 20 F -0.21 -4.55 17.30 2.25 0.04 -4.51 15 21 H 0.28 6.51 8.30 -40.82 -0.34 6.17 15 22 H 0.12 3.00 6.62 -52.48 -0.35 2.65 15 23 H 0.39 6.26 8.84 -40.82 -0.36 5.90 15 24 H 0.38 5.58 8.84 -40.82 -0.36 5.22 15 25 H 0.09 1.79 8.06 -52.48 -0.42 1.37 15 26 H 0.39 5.83 8.87 -40.82 -0.36 5.47 15 27 H 0.39 6.87 6.27 -40.82 -0.26 6.62 15 LS Contribution 244.91 15.07 3.69 3.69 Total: -1.00 -27.89 244.91 -4.86 -32.75 By element: Atomic # 1 Polarization: 21.53 SS G_CDS: -1.58 Total: 19.95 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.24 Total: -6.91 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 1.19 Total: -50.62 kcal Atomic # 9 Polarization: -12.92 SS G_CDS: 0.10 Total: -12.82 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 3.69 Total: 3.69 kcal Total: -27.89 -4.86 -32.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575721888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.332 kcal (2) G-P(sol) polarization free energy of solvation -27.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds