Wall clock time and date at job start Mon Mar 30 2020 03:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30841 * 1 3 3 Si 1.86792 * 120.00264 * 2 1 4 4 H 1.48500 * 109.47267 * 269.99770 * 3 2 1 5 5 H 1.48498 * 109.47373 * 30.00217 * 3 2 1 6 6 H 1.48506 * 109.46986 * 149.99870 * 3 2 1 7 7 C 1.39914 * 119.99128 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99520 * 170.02251 * 7 2 1 9 9 C 1.41420 * 120.00777 * 350.02022 * 7 2 1 10 10 C 1.40654 * 120.16906 * 325.58467 * 9 7 2 11 11 C 1.38334 * 119.82582 * 179.97438 * 10 9 7 12 12 N 1.39670 * 119.91724 * 179.97438 * 11 10 9 13 13 C 1.39199 * 120.16981 * 0.02562 * 11 10 9 14 14 C 1.39150 * 120.35137 * 359.97333 * 13 11 10 15 15 N 1.39676 * 119.91334 * 180.02562 * 14 13 11 16 16 C 1.38381 * 120.17494 * 0.02875 * 14 13 11 17 17 C 1.50698 * 120.09029 * 180.02562 * 16 14 13 18 18 F 1.39898 * 109.47237 * 33.98672 * 17 16 14 19 19 F 1.39895 * 109.47175 * 153.99081 * 17 16 14 20 20 F 1.39900 * 109.46565 * 273.99076 * 17 16 14 21 21 H 0.97003 * 119.99418 * 0.02562 * 1 2 3 22 22 H 1.08005 * 120.08821 * 0.25041 * 10 9 7 23 23 H 0.96999 * 120.00057 * 0.02562 * 12 11 10 24 24 H 0.97007 * 119.99969 * 179.97438 * 12 11 10 25 25 H 1.08003 * 119.82370 * 179.97438 * 13 11 10 26 26 H 0.97005 * 120.00068 * 15.06829 * 15 14 13 27 27 H 0.97001 * 120.00107 * 195.07303 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 2.4900 2.0463 -1.4001 5 1 1.4400 2.6526 0.7001 6 1 3.5400 1.4400 0.7001 7 6 2.0078 -1.2118 0.0005 8 1 3.0756 -1.2190 -0.1615 9 6 1.3167 -2.4272 0.2133 10 6 0.2123 -2.4694 1.0832 11 6 -0.4589 -3.6619 1.2857 12 7 -1.5555 -3.7061 2.1496 13 6 -0.0434 -4.8183 0.6316 14 6 1.0483 -4.7848 -0.2306 15 7 1.4570 -5.9504 -0.8826 16 6 1.7302 -3.5996 -0.4437 17 6 2.9118 -3.5654 -1.3782 18 9 2.7020 -4.4653 -2.4285 19 9 3.0613 -2.2735 -1.8939 20 9 4.0693 -3.9255 -0.6798 21 1 -0.4849 0.8401 -0.0004 22 1 -0.1137 -1.5721 1.5883 23 1 -1.8459 -2.9012 2.6063 24 1 -2.0272 -4.5417 2.2922 25 1 -0.5712 -5.7464 0.7942 26 1 0.8681 -6.7206 -0.9137 27 1 2.3297 -5.9898 -1.3042 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575721888.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:50:04 Heat of formation + Delta-G solvation = -149.997005 kcal Electronic energy + Delta-G solvation = -18383.455202 eV Core-core repulsion = 14917.748046 eV Total energy + Delta-G solvation = -3465.707156 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.79269 -48.34331 -48.17649 -39.81143 -36.16766 -35.93454 -33.44962 -30.45410 -29.53168 -27.38059 -25.28694 -22.85419 -22.09441 -19.44188 -19.21500 -19.09538 -18.35740 -17.79262 -17.27495 -16.77141 -16.28836 -15.40710 -15.21265 -15.12685 -14.73022 -14.62402 -14.50308 -14.41586 -14.19933 -13.96951 -13.74316 -13.14828 -12.78577 -12.57652 -12.15011 -11.95704 -11.79417 -11.42718 -11.07501 -10.09017 -8.61172 -8.51418 -7.98418 -6.37988 1.01375 1.26359 1.41192 1.53140 1.58743 2.20423 2.26406 2.84430 3.12757 3.40309 3.54961 3.65994 3.71863 4.07699 4.73059 5.07088 5.19114 5.27383 5.40926 5.71693 5.84294 5.96349 6.18460 6.50956 6.69366 6.86769 6.99826 7.13344 7.20277 7.37757 8.41896 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.019371 B = 0.012618 C = 0.008197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.088639 B = 2218.590382 C = 3415.164583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.819 5.819 2 C 0.041 3.959 3 Si 0.972 3.028 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.261 1.261 7 C -0.487 4.487 8 H 0.075 0.925 9 C 0.181 3.819 10 C -0.291 4.291 11 C 0.271 3.729 12 N -0.869 5.869 13 C -0.358 4.358 14 C 0.303 3.697 15 N -0.875 5.875 16 C -0.415 4.415 17 C 0.526 3.474 18 F -0.189 7.189 19 F -0.181 7.181 20 F -0.201 7.201 21 H 0.285 0.715 22 H 0.100 0.900 23 H 0.398 0.602 24 H 0.401 0.599 25 H 0.125 0.875 26 H 0.404 0.596 27 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.270 -5.531 0.803 5.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C -0.174 4.174 3 Si 0.794 3.206 4 H -0.192 1.192 5 H -0.187 1.187 6 H -0.185 1.185 7 C -0.516 4.516 8 H 0.093 0.907 9 C 0.176 3.824 10 C -0.317 4.317 11 C 0.165 3.835 12 N -0.408 5.408 13 C -0.385 4.385 14 C 0.197 3.803 15 N -0.419 5.419 16 C -0.423 4.423 17 C 0.472 3.528 18 F -0.171 7.171 19 F -0.162 7.162 20 F -0.183 7.183 21 H 0.096 0.904 22 H 0.118 0.882 23 H 0.226 0.774 24 H 0.230 0.770 25 H 0.143 0.857 26 H 0.234 0.766 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.420 -5.359 0.758 5.428 hybrid contribution 0.313 0.526 -0.248 0.660 sum -0.107 -4.833 0.509 4.861 Atomic orbital electron populations 1.69894 1.08462 1.30107 1.35999 1.26567 0.95568 1.03814 0.91482 0.85350 0.79281 0.76718 0.79298 1.19228 1.18689 1.18464 1.19883 0.95933 0.91480 1.44354 0.90687 1.17027 0.89697 0.90393 0.85259 1.20317 1.05178 0.95889 1.10317 1.17542 0.85951 0.92896 0.87144 1.42276 1.33253 1.14141 1.51172 1.19562 1.07618 0.97996 1.13368 1.16904 0.90917 0.84719 0.87785 1.42630 1.21969 1.13688 1.63603 1.19416 1.08586 0.97486 1.16860 1.18241 0.83099 0.72447 0.78995 1.92960 1.95101 1.68244 1.60805 1.93135 1.96132 1.38984 1.87952 1.93109 1.53965 1.91849 1.79383 0.90408 0.88244 0.77406 0.76985 0.85704 0.76614 0.77426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.60 11.19 21.82 0.24 -42.36 15 2 C 0.04 2.09 5.23 85.25 0.45 2.54 15 3 Si 0.97 39.37 29.57 68.60 2.03 41.40 15 4 H -0.27 -10.66 7.11 99.48 0.71 -9.96 15 5 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 15 7 C -0.49 -26.52 7.02 23.46 0.16 -26.35 15 8 H 0.08 4.10 6.41 -2.91 -0.02 4.08 15 9 C 0.18 9.73 5.46 -21.33 -0.12 9.61 15 10 C -0.29 -14.79 8.46 22.88 0.19 -14.60 15 11 C 0.27 11.65 6.74 38.15 0.26 11.91 15 12 N -0.87 -28.23 9.09 -51.55 -0.47 -28.70 15 13 C -0.36 -14.58 9.76 22.72 0.22 -14.36 15 14 C 0.30 12.99 6.64 38.14 0.25 13.24 15 15 N -0.87 -29.38 8.41 -51.54 -0.43 -29.81 15 16 C -0.42 -20.46 5.52 -19.25 -0.11 -20.57 15 17 C 0.53 24.23 2.82 71.24 0.20 24.43 15 18 F -0.19 -7.73 14.38 44.97 0.65 -7.09 15 19 F -0.18 -8.97 13.79 44.97 0.62 -8.35 15 20 F -0.20 -8.87 17.30 44.97 0.78 -8.09 15 21 H 0.29 13.47 8.30 -92.71 -0.77 12.70 15 22 H 0.10 5.27 6.62 -2.91 -0.02 5.25 15 23 H 0.40 12.06 8.84 -92.71 -0.82 11.24 15 24 H 0.40 10.33 8.84 -92.70 -0.82 9.51 15 25 H 0.13 4.24 8.06 -2.91 -0.02 4.21 15 26 H 0.40 10.78 8.87 -92.70 -0.82 9.95 15 27 H 0.39 12.95 6.27 -92.71 -0.58 12.36 15 Total: -1.00 -59.91 244.91 3.18 -56.73 By element: Atomic # 1 Polarization: 42.18 SS G_CDS: -1.75 Total: 40.42 kcal Atomic # 6 Polarization: -15.67 SS G_CDS: 1.51 Total: -14.15 kcal Atomic # 7 Polarization: -100.21 SS G_CDS: -0.66 Total: -100.87 kcal Atomic # 9 Polarization: -25.57 SS G_CDS: 2.04 Total: -23.53 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -59.91 3.18 -56.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575721888.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.268 kcal (2) G-P(sol) polarization free energy of solvation -59.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds