Wall clock time and date at job start Mon Mar 30 2020 03:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30978 * 1 3 3 Si 1.86791 * 119.99936 * 2 1 4 4 H 1.48506 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47098 * 299.99749 * 3 2 1 6 6 H 1.48500 * 109.47287 * 60.00039 * 3 2 1 7 7 C 1.39832 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99816 * 195.42883 * 7 2 1 9 9 C 1.40898 * 120.00089 * 15.42038 * 7 2 1 10 10 C 1.40845 * 120.21046 * 25.94415 * 9 7 2 11 11 C 1.36217 * 120.02003 * 180.29511 * 10 9 7 12 12 C 1.50701 * 119.75172 * 179.70075 * 11 10 9 13 13 F 1.39892 * 109.47366 * 359.97438 * 12 11 10 14 14 F 1.39895 * 109.47012 * 119.98299 * 12 11 10 15 15 F 1.39904 * 109.46608 * 239.97711 * 12 11 10 16 16 C 1.39777 * 120.48568 * 359.68084 * 11 10 9 17 17 N 1.38959 * 119.77735 * 179.97438 * 16 11 10 18 18 C 1.39072 * 120.44147 * 0.02562 * 16 11 10 19 19 C 1.38325 * 119.95498 * 0.02562 * 18 16 11 20 20 N 1.38840 * 120.23728 * 180.02562 * 19 18 16 21 21 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.99350 * 359.97438 * 10 9 7 23 23 H 0.97007 * 120.00210 * 180.02562 * 17 16 11 24 24 H 0.97002 * 120.00603 * 0.02562 * 17 16 11 25 25 H 1.07996 * 120.01995 * 179.97438 * 18 16 11 26 26 H 0.97000 * 120.00318 * 0.02562 * 20 19 18 27 27 H 0.97008 * 119.99934 * 179.72849 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 3.7038 1.3463 0.0006 5 1 1.8850 2.3964 -1.2126 6 1 1.8850 2.3964 1.2125 7 6 2.0089 -1.2110 0.0005 8 1 3.0597 -1.2277 0.2494 9 6 1.3424 -2.4094 -0.3234 10 6 0.1991 -2.3846 -1.1454 11 6 -0.4458 -3.5448 -1.4512 12 6 -1.6726 -3.5105 -2.3258 13 9 -1.9471 -2.1887 -2.6925 14 9 -1.4476 -4.2762 -3.4748 15 9 -2.7619 -4.0350 -1.6218 16 6 0.0223 -4.7669 -0.9601 17 7 -0.6472 -5.9416 -1.2809 18 6 1.1530 -4.8149 -0.1518 19 6 1.8213 -3.6477 0.1711 20 7 2.9509 -3.6889 0.9772 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1696 -1.4448 -1.5292 23 1 -0.3254 -6.7915 -0.9415 24 1 -1.4364 -5.9118 -1.8441 25 1 1.5084 -5.7629 0.2243 26 1 3.2744 -4.5383 1.3158 27 1 3.4193 -2.8686 1.1982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000575721901.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:51 Heat of formation + Delta-G solvation = -138.013896 kcal Electronic energy + Delta-G solvation = -18144.025961 eV Core-core repulsion = 14678.838431 eV Total energy + Delta-G solvation = -3465.187530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.28613 -46.77303 -46.75560 -38.28794 -34.89151 -33.54066 -31.90693 -28.81172 -28.50472 -24.90916 -23.73587 -21.37209 -20.25085 -17.97308 -17.61884 -17.54179 -16.46889 -16.12555 -15.91386 -15.03279 -14.79055 -13.72249 -13.68742 -13.44760 -13.22414 -13.01994 -12.95584 -12.92539 -12.39365 -12.30654 -12.26455 -11.41883 -11.03418 -10.99254 -10.62967 -10.37325 -9.89601 -9.71258 -9.14678 -8.63245 -6.90125 -6.67844 -6.46099 -3.99775 2.71857 2.88527 3.16961 3.19905 3.22910 3.69411 4.06332 4.60643 4.68715 4.91196 5.08938 5.19927 5.30102 5.71365 6.11886 6.67157 6.83797 7.06366 7.19505 7.28889 7.52282 7.77739 7.97328 8.30789 8.38530 8.57466 8.68643 8.82136 9.01687 9.07669 10.42468 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.009751 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.497650 B = 2870.811702 C = 3802.703285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.072 3.928 3 Si 0.903 3.097 4 H -0.265 1.265 5 H -0.275 1.275 6 H -0.279 1.279 7 C -0.465 4.465 8 H 0.070 0.930 9 C 0.017 3.983 10 C -0.061 4.061 11 C -0.278 4.278 12 C 0.511 3.489 13 F -0.181 7.181 14 F -0.197 7.197 15 F -0.195 7.195 16 C 0.201 3.799 17 N -0.888 5.888 18 C -0.258 4.258 19 C 0.191 3.809 20 N -0.874 5.874 21 H 0.276 0.724 22 H 0.138 0.862 23 H 0.387 0.613 24 H 0.385 0.615 25 H 0.099 0.901 26 H 0.380 0.620 27 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.255 -5.732 -1.309 5.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.142 4.142 3 Si 0.729 3.271 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.204 1.204 7 C -0.498 4.498 8 H 0.088 0.912 9 C 0.012 3.988 10 C -0.083 4.083 11 C -0.285 4.285 12 C 0.457 3.543 13 F -0.163 7.163 14 F -0.178 7.178 15 F -0.176 7.176 16 C 0.099 3.901 17 N -0.430 5.430 18 C -0.285 4.285 19 C 0.086 3.914 20 N -0.413 5.413 21 H 0.087 0.913 22 H 0.155 0.845 23 H 0.214 0.786 24 H 0.213 0.787 25 H 0.117 0.883 26 H 0.206 0.794 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 0.026 -5.477 -1.328 5.636 hybrid contribution 0.163 0.444 0.054 0.476 sum 0.189 -5.033 -1.275 5.196 Atomic orbital electron populations 1.69824 1.07097 1.28492 1.38620 1.25683 0.94702 1.00629 0.93216 0.86356 0.80611 0.81883 0.78298 1.18889 1.20035 1.20432 1.18927 0.96434 0.90803 1.43601 0.91168 1.16956 0.95228 0.90588 0.96056 1.20557 0.96234 0.95481 0.96026 1.18741 1.00827 0.95617 1.13327 1.18632 0.84488 0.72636 0.78505 1.93108 1.94607 1.36305 1.92265 1.93105 1.94855 1.76323 1.53550 1.93112 1.58784 1.86779 1.78966 1.16641 0.92542 0.84457 0.96499 1.42109 1.34035 1.06193 1.60670 1.19347 1.01190 0.96161 1.11827 1.17873 0.88369 0.93613 0.91496 1.42051 1.31098 1.10201 1.57984 0.91308 0.84494 0.78594 0.78730 0.88311 0.79423 0.77424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.29 10.90 55.54 0.61 -20.68 15 2 C 0.07 1.80 5.17 -17.32 -0.09 1.71 15 3 Si 0.90 18.85 29.59 -169.99 -5.03 13.82 15 4 H -0.26 -5.41 7.11 56.52 0.40 -5.01 15 5 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15 6 H -0.28 -5.78 7.11 56.52 0.40 -5.38 15 7 C -0.47 -11.81 8.49 -37.98 -0.32 -12.13 15 8 H 0.07 1.67 6.67 -52.49 -0.35 1.32 15 9 C 0.02 0.44 5.58 -106.59 -0.60 -0.15 15 10 C -0.06 -1.57 7.99 -39.32 -0.31 -1.88 15 11 C -0.28 -6.49 5.35 -104.77 -0.56 -7.05 15 12 C 0.51 10.94 2.79 36.01 0.10 11.04 15 13 F -0.18 -4.04 15.92 2.25 0.04 -4.00 15 14 F -0.20 -3.89 16.22 2.25 0.04 -3.85 15 15 F -0.19 -3.98 16.22 2.25 0.04 -3.94 15 16 C 0.20 4.29 6.66 -83.75 -0.56 3.73 15 17 N -0.89 -15.33 8.79 32.47 0.29 -15.04 15 18 C -0.26 -5.38 9.71 -39.24 -0.38 -5.76 15 19 C 0.19 4.28 6.78 -83.35 -0.56 3.72 15 20 N -0.87 -16.02 8.98 32.69 0.29 -15.73 15 21 H 0.28 6.71 8.30 -40.82 -0.34 6.38 15 22 H 0.14 3.72 5.19 -52.49 -0.27 3.45 15 23 H 0.39 5.53 8.83 -40.82 -0.36 5.17 15 24 H 0.39 6.46 6.18 -40.82 -0.25 6.21 15 25 H 0.10 1.78 8.06 -52.49 -0.42 1.36 15 26 H 0.38 5.69 8.83 -40.82 -0.36 5.33 15 27 H 0.40 7.15 7.05 -40.82 -0.29 6.86 15 LS Contribution 245.56 15.07 3.70 3.70 Total: -1.00 -27.40 245.56 -4.76 -32.16 By element: Atomic # 1 Polarization: 21.79 SS G_CDS: -1.44 Total: 20.35 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -3.28 Total: -6.78 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 1.18 Total: -51.45 kcal Atomic # 9 Polarization: -11.91 SS G_CDS: 0.11 Total: -11.80 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.03 Total: 13.82 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -27.40 -4.76 -32.16 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575721901.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.852 kcal (2) G-P(sol) polarization free energy of solvation -27.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds