Wall clock time and date at job start Mon Mar 30 2020 03:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30978 * 1 3 3 Si 1.86791 * 119.99936 * 2 1 4 4 H 1.48506 * 109.47069 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47098 * 299.99749 * 3 2 1 6 6 H 1.48500 * 109.47287 * 60.00039 * 3 2 1 7 7 C 1.39832 * 119.99863 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99816 * 195.42883 * 7 2 1 9 9 C 1.40898 * 120.00089 * 15.42038 * 7 2 1 10 10 C 1.40845 * 120.21046 * 25.94415 * 9 7 2 11 11 C 1.36217 * 120.02003 * 180.29511 * 10 9 7 12 12 C 1.50701 * 119.75172 * 179.70075 * 11 10 9 13 13 F 1.39892 * 109.47366 * 359.97438 * 12 11 10 14 14 F 1.39895 * 109.47012 * 119.98299 * 12 11 10 15 15 F 1.39904 * 109.46608 * 239.97711 * 12 11 10 16 16 C 1.39777 * 120.48568 * 359.68084 * 11 10 9 17 17 N 1.38959 * 119.77735 * 179.97438 * 16 11 10 18 18 C 1.39072 * 120.44147 * 0.02562 * 16 11 10 19 19 C 1.38325 * 119.95498 * 0.02562 * 18 16 11 20 20 N 1.38840 * 120.23728 * 180.02562 * 19 18 16 21 21 H 0.96997 * 119.99880 * 0.02562 * 1 2 3 22 22 H 1.07998 * 119.99350 * 359.97438 * 10 9 7 23 23 H 0.97007 * 120.00210 * 180.02562 * 17 16 11 24 24 H 0.97002 * 120.00603 * 0.02562 * 17 16 11 25 25 H 1.07996 * 120.01995 * 179.97438 * 18 16 11 26 26 H 0.97000 * 120.00318 * 0.02562 * 20 19 18 27 27 H 0.97008 * 119.99934 * 179.72849 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3098 0.0000 0.0000 3 14 2.2437 1.6177 0.0000 4 1 3.7038 1.3463 0.0006 5 1 1.8850 2.3964 -1.2126 6 1 1.8850 2.3964 1.2125 7 6 2.0089 -1.2110 0.0005 8 1 3.0597 -1.2277 0.2494 9 6 1.3424 -2.4094 -0.3234 10 6 0.1991 -2.3846 -1.1454 11 6 -0.4458 -3.5448 -1.4512 12 6 -1.6726 -3.5105 -2.3258 13 9 -1.9471 -2.1887 -2.6925 14 9 -1.4476 -4.2762 -3.4748 15 9 -2.7619 -4.0350 -1.6218 16 6 0.0223 -4.7669 -0.9601 17 7 -0.6472 -5.9416 -1.2809 18 6 1.1530 -4.8149 -0.1518 19 6 1.8213 -3.6477 0.1711 20 7 2.9509 -3.6889 0.9772 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1696 -1.4448 -1.5292 23 1 -0.3254 -6.7915 -0.9415 24 1 -1.4364 -5.9118 -1.8441 25 1 1.5084 -5.7629 0.2243 26 1 3.2744 -4.5383 1.3158 27 1 3.4193 -2.8686 1.1982 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000575721901.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:49:51 Heat of formation + Delta-G solvation = -156.301283 kcal Electronic energy + Delta-G solvation = -18144.818961 eV Core-core repulsion = 14678.838431 eV Total energy + Delta-G solvation = -3465.980530 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.97298 -48.47881 -48.41864 -40.00117 -36.54664 -35.28626 -33.59470 -30.50586 -30.21654 -26.70042 -25.44285 -23.12104 -21.96253 -19.70525 -19.29572 -19.25732 -18.14716 -17.75145 -17.62655 -16.58635 -16.48856 -15.38619 -15.37376 -15.13409 -14.90486 -14.69171 -14.63607 -14.61668 -14.10829 -14.01363 -13.98229 -13.16691 -12.75606 -12.71158 -12.28545 -12.01020 -11.63100 -11.48814 -10.93737 -10.36841 -8.51056 -8.48318 -8.21946 -5.86012 0.95639 1.14087 1.46235 1.55807 1.58486 1.98768 2.33379 2.82776 3.15081 3.25199 3.38627 3.55257 3.66781 3.93329 4.46482 5.02297 5.11790 5.36360 5.41398 5.55868 5.75649 5.99033 6.17142 6.53261 6.79090 6.94020 7.10691 7.18499 7.25866 7.47427 8.61966 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.023875 B = 0.009751 C = 0.007361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.497650 B = 2870.811702 C = 3802.703285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.026 3.974 3 Si 0.971 3.029 4 H -0.256 1.256 5 H -0.278 1.278 6 H -0.276 1.276 7 C -0.488 4.488 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.082 4.082 11 C -0.308 4.308 12 C 0.517 3.483 13 F -0.191 7.191 14 F -0.186 7.186 15 F -0.189 7.189 16 C 0.218 3.782 17 N -0.871 5.871 18 C -0.266 4.266 19 C 0.200 3.800 20 N -0.858 5.858 21 H 0.276 0.724 22 H 0.111 0.889 23 H 0.406 0.594 24 H 0.390 0.610 25 H 0.135 0.865 26 H 0.400 0.600 27 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -7.254 -0.896 7.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.184 4.184 3 Si 0.794 3.206 4 H -0.179 1.179 5 H -0.203 1.203 6 H -0.201 1.201 7 C -0.520 4.520 8 H 0.095 0.905 9 C -0.031 4.031 10 C -0.105 4.105 11 C -0.316 4.316 12 C 0.463 3.537 13 F -0.172 7.172 14 F -0.168 7.168 15 F -0.170 7.170 16 C 0.113 3.887 17 N -0.413 5.413 18 C -0.294 4.294 19 C 0.092 3.908 20 N -0.398 5.398 21 H 0.086 0.914 22 H 0.129 0.871 23 H 0.236 0.764 24 H 0.218 0.782 25 H 0.152 0.848 26 H 0.229 0.771 27 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 0.971 -7.064 -0.897 7.187 hybrid contribution -0.125 0.706 -0.070 0.720 sum 0.845 -6.359 -0.967 6.487 Atomic orbital electron populations 1.69933 1.08575 1.29089 1.40580 1.26466 0.95345 1.03762 0.92830 0.85316 0.79609 0.77696 0.77943 1.17911 1.20348 1.20134 1.19200 0.96835 0.91555 1.44441 0.90458 1.17266 0.96232 0.92054 0.97522 1.20416 0.97365 0.95393 0.97280 1.18869 1.01876 0.95938 1.14909 1.18408 0.84182 0.72459 0.78645 1.93089 1.94627 1.37160 1.92332 1.93119 1.94809 1.75922 1.52914 1.93118 1.58404 1.86613 1.78895 1.16819 0.92198 0.84933 0.94795 1.42047 1.33545 1.05851 1.59891 1.19675 1.00916 0.97119 1.11730 1.18041 0.88803 0.93149 0.90776 1.41989 1.29659 1.11529 1.56608 0.91377 0.87084 0.76401 0.78177 0.84768 0.77124 0.77155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.30 10.90 21.81 0.24 -46.06 15 2 C 0.03 1.32 5.17 85.21 0.44 1.76 15 3 Si 0.97 39.33 29.59 68.60 2.03 41.36 15 4 H -0.26 -9.81 7.11 99.48 0.71 -9.11 15 5 H -0.28 -11.24 7.11 99.48 0.71 -10.54 15 6 H -0.28 -10.91 7.11 99.48 0.71 -10.21 15 7 C -0.49 -25.04 8.49 23.31 0.20 -24.85 15 8 H 0.08 3.68 6.67 -2.91 -0.02 3.66 15 9 C -0.03 -1.29 5.58 -21.14 -0.12 -1.41 15 10 C -0.08 -4.32 7.99 22.44 0.18 -4.14 15 11 C -0.31 -14.32 5.35 -19.96 -0.11 -14.42 15 12 C 0.52 21.94 2.79 71.24 0.20 22.14 15 13 F -0.19 -8.67 15.92 44.97 0.72 -7.96 15 14 F -0.19 -7.13 16.22 44.97 0.73 -6.40 15 15 F -0.19 -7.51 16.22 44.97 0.73 -6.78 15 16 C 0.22 8.81 6.66 38.58 0.26 9.07 15 17 N -0.87 -27.26 8.79 -51.18 -0.45 -27.71 15 18 C -0.27 -10.38 9.71 22.49 0.22 -10.16 15 19 C 0.20 8.62 6.78 38.90 0.26 8.88 15 20 N -0.86 -29.43 8.98 -50.50 -0.45 -29.88 15 21 H 0.28 13.99 8.30 -92.71 -0.77 13.22 15 22 H 0.11 6.34 5.19 -2.91 -0.02 6.32 15 23 H 0.41 9.92 8.83 -92.70 -0.82 9.10 15 24 H 0.39 11.94 6.18 -92.71 -0.57 11.36 15 25 H 0.13 4.21 8.06 -2.91 -0.02 4.19 15 26 H 0.40 10.61 8.83 -92.71 -0.82 9.79 15 27 H 0.40 13.67 7.05 -92.70 -0.65 13.02 15 Total: -1.00 -59.27 245.56 3.50 -55.77 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: -1.57 Total: 40.81 kcal Atomic # 6 Polarization: -14.66 SS G_CDS: 1.53 Total: -13.13 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -0.67 Total: -103.66 kcal Atomic # 9 Polarization: -23.32 SS G_CDS: 2.17 Total: -21.14 kcal Atomic # 14 Polarization: 39.33 SS G_CDS: 2.03 Total: 41.36 kcal Total: -59.27 3.50 -55.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000575721901.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.536 kcal (2) G-P(sol) polarization free energy of solvation -59.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds