Wall clock time and date at job start Mon Mar 30 2020 03:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99601 * 2 1 4 4 H 1.48505 * 109.47013 * 269.99683 * 3 2 1 5 5 H 1.48498 * 109.47495 * 29.99563 * 3 2 1 6 6 H 1.48496 * 109.47310 * 150.00012 * 3 2 1 7 7 C 1.37873 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00199 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99839 * 179.97438 * 7 2 1 10 10 C 1.53492 * 114.20422 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98425 * 220.14955 * 10 9 7 12 12 S 1.65608 * 136.05886 * 207.08770 * 11 10 9 13 13 O 1.42098 * 106.39961 * 336.45765 * 12 11 10 14 14 O 1.42097 * 106.40017 * 203.54041 * 12 11 10 15 15 N 1.65593 * 107.21762 * 89.99782 * 12 11 10 16 16 C 1.46501 * 120.00159 * 65.00301 * 15 12 11 17 17 C 1.53001 * 117.51946 * 146.28215 * 16 15 12 18 18 C 1.52999 * 60.00190 * 107.47992 * 17 16 15 19 19 C 1.47066 * 87.88495 * 27.34274 * 11 10 9 20 20 H 0.96994 * 120.00082 * 0.02562 * 1 2 3 21 21 H 1.08998 * 113.28006 * 313.07159 * 9 7 2 22 22 H 1.08998 * 113.46646 * 105.37327 * 10 9 7 23 23 H 1.08998 * 113.52674 * 334.93573 * 10 9 7 24 24 H 0.97007 * 119.99929 * 244.99604 * 15 12 11 25 25 H 1.09002 * 115.54982 * 0.58012 * 16 15 12 26 26 H 1.09001 * 117.49733 * 214.97423 * 17 16 15 27 27 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 28 28 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 29 29 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 30 30 H 1.09002 * 113.46495 * 87.44260 * 19 11 10 31 31 H 1.09000 * 113.46785 * 217.87543 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.1410 -2.5938 0.0000 11 7 5.1448 -2.0858 0.9472 12 16 6.7107 -2.4569 1.3383 13 8 6.9097 -3.8108 0.9557 14 8 6.9159 -1.9853 2.6630 15 7 7.6891 -1.5461 0.3609 16 6 7.6922 -0.0862 0.4833 17 6 9.0139 0.6417 0.2297 18 6 7.8829 0.7297 -0.7970 19 6 4.1440 -1.1074 1.3988 20 1 -0.4850 0.8400 -0.0004 21 1 3.9421 -0.5106 -0.7321 22 1 4.5604 -2.8812 -0.9641 23 1 3.4940 -3.3618 0.4238 24 1 8.2602 -1.9792 -0.2927 25 1 7.0308 0.3229 1.2470 26 1 9.2220 1.5296 0.8266 27 1 9.8815 0.0343 -0.0279 28 1 8.0064 0.1802 -1.7302 29 1 7.3469 1.6756 -0.8754 30 1 3.4970 -1.4827 2.1916 31 1 4.5659 -0.1284 1.6263 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594825218.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:13 Heat of formation + Delta-G solvation = -13.832770 kcal Electronic energy + Delta-G solvation = -16436.693663 eV Core-core repulsion = 13654.191723 eV Total energy + Delta-G solvation = -2782.501940 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.49012 -37.81138 -36.88738 -35.59915 -32.59332 -32.08915 -28.85510 -25.26094 -24.46069 -22.47909 -22.12015 -20.01354 -18.93087 -17.80834 -17.05955 -16.84897 -16.45491 -15.19802 -14.82199 -14.53586 -13.99996 -13.35984 -13.00181 -12.84097 -12.34528 -12.16144 -12.01527 -11.87895 -11.81246 -11.80463 -11.65853 -11.61373 -10.86303 -10.57885 -10.44331 -10.06968 -9.56220 -9.24036 -9.08184 -8.66281 -8.47233 -6.19798 -4.21450 0.79009 3.08631 3.20312 3.29413 3.30469 3.69112 3.84317 4.31257 4.44432 4.71576 4.80938 4.84905 5.02018 5.08448 5.51279 5.62381 5.77113 5.82605 5.97243 6.05832 6.11071 6.22800 6.28480 6.39405 6.53725 6.97350 7.13973 7.33606 7.58556 8.37930 8.84464 9.41573 10.92411 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.008652 C = 0.007037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.878915 B = 3235.337196 C = 3978.068950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.075 3.925 3 Si 0.875 3.125 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.259 1.259 7 C -0.512 4.512 8 H 0.080 0.920 9 C -0.006 4.006 10 C 0.142 3.858 11 N -1.055 6.055 12 S 2.808 3.192 13 O -0.985 6.985 14 O -0.982 6.982 15 N -1.099 6.099 16 C 0.091 3.909 17 C -0.189 4.189 18 C -0.189 4.189 19 C 0.117 3.883 20 H 0.266 0.734 21 H 0.060 0.940 22 H 0.058 0.942 23 H 0.080 0.920 24 H 0.413 0.587 25 H 0.134 0.866 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.083 0.917 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.593 1.652 -1.195 14.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.184 1.184 7 C -0.551 4.551 8 H 0.098 0.902 9 C -0.028 4.028 10 C 0.017 3.983 11 N -0.899 5.899 12 S 2.819 3.181 13 O -0.970 6.970 14 O -0.965 6.965 15 N -0.854 5.854 16 C -0.018 4.018 17 C -0.229 4.229 18 C -0.228 4.228 19 C -0.008 4.008 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.076 0.924 23 H 0.098 0.902 24 H 0.246 0.754 25 H 0.152 0.848 26 H 0.120 0.880 27 H 0.115 0.885 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.101 0.899 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.851 1.133 -0.289 14.897 hybrid contribution 0.614 1.008 -0.557 1.305 sum 15.466 2.140 -0.846 15.636 Atomic orbital electron populations 1.69896 1.06396 1.27259 1.49454 1.25024 0.94663 0.99189 0.93939 0.86897 0.80647 0.83609 0.78631 1.20234 1.21346 1.18381 1.20860 0.87805 0.94840 1.51571 0.90240 1.20918 0.96663 0.92901 0.92275 1.22564 0.86407 0.99245 0.90109 1.60192 1.25296 1.50301 1.54074 1.00959 0.71770 0.72274 0.73108 1.93585 1.85791 1.33345 1.84232 1.93583 1.85143 1.82300 1.35505 1.55685 1.58544 1.14698 1.56484 1.21241 1.01010 0.78984 1.00562 1.23360 0.93029 1.03016 1.03495 1.23396 1.02494 1.02539 0.94418 1.23389 0.86478 0.89354 1.01559 0.92426 0.92207 0.92357 0.90212 0.75417 0.84838 0.88027 0.88514 0.88299 0.87895 0.89902 0.92751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 13.96 55.43 0.77 -24.80 16 2 C 0.08 1.99 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 19.54 27.15 -169.99 -4.62 14.93 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.32 5.72 56.52 0.32 -5.00 16 7 C -0.51 -13.03 9.38 -34.44 -0.32 -13.35 16 8 H 0.08 2.20 8.06 -52.49 -0.42 1.77 16 9 C -0.01 -0.13 2.97 -91.12 -0.27 -0.40 16 10 C 0.14 2.63 8.29 -8.51 -0.07 2.56 16 11 N -1.05 -19.02 4.29 -125.03 -0.54 -19.55 16 12 S 2.81 47.33 6.70 -107.50 -0.72 46.61 16 13 O -0.99 -18.69 18.14 -57.17 -1.04 -19.73 16 14 O -0.98 -19.06 17.89 -57.17 -1.02 -20.08 16 15 N -1.10 -14.38 6.10 -4.89 -0.03 -14.41 16 16 C 0.09 1.13 6.49 -67.93 -0.44 0.68 16 17 C -0.19 -1.86 10.46 -26.73 -0.28 -2.14 16 18 C -0.19 -1.98 10.46 -26.73 -0.28 -2.26 16 19 C 0.12 2.30 7.74 -8.37 -0.06 2.23 16 20 H 0.27 7.15 8.31 -40.82 -0.34 6.82 16 21 H 0.06 1.22 7.03 -51.93 -0.37 0.85 16 22 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 23 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 24 H 0.41 4.43 8.96 -34.47 -0.31 4.12 16 25 H 0.13 1.74 8.10 -51.93 -0.42 1.32 16 26 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 31 H 0.05 1.00 7.15 -51.93 -0.37 0.63 16 LS Contribution 279.93 15.07 4.22 4.22 Total: -1.00 -31.20 279.93 -8.85 -40.05 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -4.06 Total: 3.55 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: -1.83 Total: -10.78 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.21 Total: -58.76 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -2.06 Total: -39.81 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -4.62 Total: 14.93 kcal Atomic # 16 Polarization: 47.33 SS G_CDS: -0.72 Total: 46.61 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -31.20 -8.85 -40.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825218.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.222 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds