Wall clock time and date at job start Mon Mar 30 2020 03:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99601 * 2 1 4 4 H 1.48505 * 109.47013 * 269.99683 * 3 2 1 5 5 H 1.48498 * 109.47495 * 29.99563 * 3 2 1 6 6 H 1.48496 * 109.47310 * 150.00012 * 3 2 1 7 7 C 1.37873 * 120.00231 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00199 * 0.02562 * 7 2 1 9 9 C 1.50706 * 119.99839 * 179.97438 * 7 2 1 10 10 C 1.53492 * 114.20422 * 180.02562 * 9 7 2 11 11 N 1.47066 * 87.98425 * 220.14955 * 10 9 7 12 12 S 1.65608 * 136.05886 * 207.08770 * 11 10 9 13 13 O 1.42098 * 106.39961 * 336.45765 * 12 11 10 14 14 O 1.42097 * 106.40017 * 203.54041 * 12 11 10 15 15 N 1.65593 * 107.21762 * 89.99782 * 12 11 10 16 16 C 1.46501 * 120.00159 * 65.00301 * 15 12 11 17 17 C 1.53001 * 117.51946 * 146.28215 * 16 15 12 18 18 C 1.52999 * 60.00190 * 107.47992 * 17 16 15 19 19 C 1.47066 * 87.88495 * 27.34274 * 11 10 9 20 20 H 0.96994 * 120.00082 * 0.02562 * 1 2 3 21 21 H 1.08998 * 113.28006 * 313.07159 * 9 7 2 22 22 H 1.08998 * 113.46646 * 105.37327 * 10 9 7 23 23 H 1.08998 * 113.52674 * 334.93573 * 10 9 7 24 24 H 0.97007 * 119.99929 * 244.99604 * 15 12 11 25 25 H 1.09002 * 115.54982 * 0.58012 * 16 15 12 26 26 H 1.09001 * 117.49733 * 214.97423 * 17 16 15 27 27 H 1.08995 * 117.49577 * 359.97438 * 17 16 15 28 28 H 1.09004 * 117.50150 * 252.51496 * 18 17 16 29 29 H 1.09004 * 117.49681 * 107.48417 * 18 17 16 30 30 H 1.09002 * 113.46495 * 87.44260 * 19 11 10 31 31 H 1.09000 * 113.46785 * 217.87543 * 19 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.1410 -2.5938 0.0000 11 7 5.1448 -2.0858 0.9472 12 16 6.7107 -2.4569 1.3383 13 8 6.9097 -3.8108 0.9557 14 8 6.9159 -1.9853 2.6630 15 7 7.6891 -1.5461 0.3609 16 6 7.6922 -0.0862 0.4833 17 6 9.0139 0.6417 0.2297 18 6 7.8829 0.7297 -0.7970 19 6 4.1440 -1.1074 1.3988 20 1 -0.4850 0.8400 -0.0004 21 1 3.9421 -0.5106 -0.7321 22 1 4.5604 -2.8812 -0.9641 23 1 3.4940 -3.3618 0.4238 24 1 8.2602 -1.9792 -0.2927 25 1 7.0308 0.3229 1.2470 26 1 9.2220 1.5296 0.8266 27 1 9.8815 0.0343 -0.0279 28 1 8.0064 0.1802 -1.7302 29 1 7.3469 1.6756 -0.8754 30 1 3.4970 -1.4827 2.1916 31 1 4.5659 -0.1284 1.6263 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594825218.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:46:13 Heat of formation + Delta-G solvation = -38.366724 kcal Electronic energy + Delta-G solvation = -16437.757535 eV Core-core repulsion = 13654.191723 eV Total energy + Delta-G solvation = -2783.565812 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.05184 -38.73784 -38.27245 -37.04579 -34.57672 -33.09702 -30.57480 -26.79399 -26.25574 -23.21378 -23.04871 -21.56992 -20.31042 -19.35522 -18.70882 -18.30654 -17.54324 -16.44054 -16.40783 -15.78357 -15.54060 -14.95647 -14.54556 -14.01471 -13.90006 -13.43831 -13.38517 -13.32144 -13.28269 -13.18161 -13.08686 -12.57917 -12.35855 -12.19636 -11.77787 -11.36713 -11.22903 -11.10995 -10.60158 -10.05543 -9.97057 -8.22100 -6.28610 -0.55045 1.45801 1.47714 1.58514 1.81786 2.44160 2.47491 2.94263 3.06109 3.17442 3.84008 3.94048 3.99175 4.08995 4.15428 4.22864 4.51578 4.73149 4.75929 4.81756 4.86023 5.00989 5.05206 5.22714 5.26655 5.45338 5.67337 5.81573 6.03008 6.36689 6.78763 7.38494 8.93618 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.025109 B = 0.008652 C = 0.007037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.878915 B = 3235.337196 C = 3978.068950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.015 3.985 3 Si 0.939 3.061 4 H -0.268 1.268 5 H -0.295 1.295 6 H -0.227 1.227 7 C -0.513 4.513 8 H 0.039 0.961 9 C -0.012 4.012 10 C 0.143 3.857 11 N -1.053 6.053 12 S 2.830 3.170 13 O -1.007 7.007 14 O -1.006 7.006 15 N -1.083 6.083 16 C 0.055 3.945 17 C -0.173 4.173 18 C -0.182 4.182 19 C 0.119 3.881 20 H 0.265 0.735 21 H 0.076 0.924 22 H 0.083 0.917 23 H 0.071 0.929 24 H 0.425 0.575 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.109 0.891 30 H 0.071 0.929 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.415 2.987 -1.778 17.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.222 1.222 6 H -0.149 1.149 7 C -0.552 4.552 8 H 0.057 0.943 9 C -0.033 4.033 10 C 0.018 3.982 11 N -0.895 5.895 12 S 2.841 3.159 13 O -0.991 6.991 14 O -0.990 6.990 15 N -0.844 5.844 16 C -0.053 4.053 17 C -0.212 4.212 18 C -0.221 4.221 19 C -0.007 4.007 20 H 0.074 0.926 21 H 0.094 0.906 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.262 0.738 25 H 0.143 0.857 26 H 0.133 0.867 27 H 0.127 0.873 28 H 0.125 0.875 29 H 0.128 0.872 30 H 0.090 0.910 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.701 2.441 -0.880 17.890 hybrid contribution -0.239 0.513 -0.394 0.690 sum 17.462 2.955 -1.274 17.756 Atomic orbital electron populations 1.70061 1.08560 1.28188 1.51966 1.25936 0.95335 1.03349 0.93697 0.85872 0.80411 0.78224 0.79273 1.19269 1.22158 1.14946 1.21096 0.90416 0.93275 1.50383 0.94275 1.20881 0.93661 0.95060 0.93745 1.22483 0.86532 0.97793 0.91425 1.60114 1.25685 1.49878 1.53847 1.00151 0.71345 0.71694 0.72740 1.93553 1.85959 1.35118 1.84502 1.93552 1.85351 1.82641 1.37473 1.55222 1.57614 1.15180 1.56344 1.21469 1.03447 0.78230 1.02173 1.23478 0.92365 1.02792 1.02581 1.23489 1.02412 1.02213 0.93981 1.23168 0.86876 0.90565 1.00080 0.92571 0.90581 0.89891 0.91077 0.73835 0.85680 0.86710 0.87344 0.87527 0.87220 0.91032 0.90977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.98 13.96 21.45 0.30 -55.68 16 2 C 0.01 0.78 5.47 84.65 0.46 1.25 16 3 Si 0.94 39.35 27.15 68.60 1.86 41.22 16 4 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.30 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.23 -8.21 5.72 99.48 0.57 -7.64 16 7 C -0.51 -26.49 9.38 25.60 0.24 -26.25 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.24 16 9 C -0.01 -0.50 2.97 -11.12 -0.03 -0.53 16 10 C 0.14 5.11 8.29 83.18 0.69 5.80 16 11 N -1.05 -35.99 4.29 -549.50 -2.36 -38.34 16 12 S 2.83 89.83 6.70 -56.49 -0.38 89.45 16 13 O -1.01 -36.49 18.14 -128.00 -2.32 -38.81 16 14 O -1.01 -37.43 17.89 -128.00 -2.29 -39.72 16 15 N -1.08 -25.18 6.10 -169.38 -1.03 -26.21 16 16 C 0.05 1.17 6.49 44.99 0.29 1.47 16 17 C -0.17 -2.70 10.46 30.59 0.32 -2.38 16 18 C -0.18 -3.07 10.46 30.60 0.32 -2.75 16 19 C 0.12 4.44 7.74 83.27 0.64 5.09 16 20 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 21 H 0.08 2.86 7.03 -2.39 -0.02 2.85 16 22 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 23 H 0.07 2.65 8.10 -2.39 -0.02 2.63 16 24 H 0.43 7.75 8.96 -96.74 -0.87 6.89 16 25 H 0.13 2.90 8.10 -2.39 -0.02 2.88 16 26 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 28 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.11 1.72 8.14 -2.38 -0.02 1.70 16 30 H 0.07 2.82 8.10 -2.39 -0.02 2.80 16 31 H 0.07 2.43 7.15 -2.39 -0.02 2.42 16 Total: -1.00 -67.51 279.93 -3.15 -70.66 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.13 Total: 15.74 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: 2.94 Total: -18.30 kcal Atomic # 7 Polarization: -117.14 SS G_CDS: -3.09 Total: -120.23 kcal Atomic # 8 Polarization: -73.92 SS G_CDS: -4.61 Total: -78.53 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.86 Total: 41.22 kcal Atomic # 16 Polarization: 89.83 SS G_CDS: -0.38 Total: 89.45 kcal Total: -67.51 -3.15 -70.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594825218.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.290 kcal (2) G-P(sol) polarization free energy of solvation -67.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds