Wall clock time and date at job start Mon Mar 30 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47204 * 240.00518 * 3 2 1 5 5 H 1.48501 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47209 * 120.00411 * 3 2 1 7 7 C 1.38814 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47112 * 179.97438 * 10 9 7 12 12 C 1.38220 * 120.41702 * 259.99894 * 11 10 9 13 13 N 1.31860 * 120.76174 * 179.97438 * 12 11 10 14 14 C 1.31880 * 121.72574 * 359.97438 * 13 12 11 15 15 C 1.38185 * 120.76785 * 359.97438 * 14 13 12 16 16 C 1.38625 * 120.41524 * 79.95306 * 11 10 9 17 17 C 1.50699 * 120.79555 * 0.02769 * 16 11 10 18 18 F 1.39901 * 109.46994 * 180.02562 * 17 16 11 19 19 F 1.39899 * 109.46800 * 299.99641 * 17 16 11 20 20 F 1.39896 * 109.47074 * 59.99542 * 17 16 11 21 21 H 0.96993 * 120.00234 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99714 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.46994 * 59.99488 * 10 9 7 24 24 H 1.09001 * 109.47246 * 299.99882 * 10 9 7 25 25 H 1.08001 * 119.62033 * 359.95681 * 12 11 10 26 26 H 1.08003 * 119.62232 * 180.02562 * 14 13 12 27 27 H 1.07995 * 120.42231 * 179.74997 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0789 -4.8023 0.0001 12 6 0.7819 -5.4684 1.1742 13 7 -0.0742 -6.4712 1.1827 14 6 -0.6780 -6.8769 0.0826 15 6 -0.4316 -6.2583 -1.1282 16 6 0.4638 -5.2004 -1.1767 17 6 0.7603 -4.4998 -2.4776 18 9 0.0157 -5.0892 -3.5049 19 9 0.4153 -3.1484 -2.3684 20 9 2.1245 -4.6109 -2.7667 21 1 -0.4850 0.8400 0.0004 22 1 0.3556 -2.3880 0.0002 23 1 2.6849 -3.7144 0.8894 24 1 2.6848 -3.7145 -0.8905 25 1 1.2568 -5.1643 2.0953 26 1 -1.3736 -7.7018 0.1286 27 1 -0.9261 -6.5977 -2.0263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700779934.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:37 Heat of formation + Delta-G solvation = -97.819200 kcal Electronic energy + Delta-G solvation = -18120.867543 eV Core-core repulsion = 14657.422986 eV Total energy + Delta-G solvation = -3463.444557 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.79350 -47.40416 -47.06134 -40.24704 -35.20533 -33.14400 -32.06409 -30.08989 -26.78548 -25.61886 -23.21362 -22.58335 -21.33115 -18.36596 -18.26062 -18.00558 -17.28848 -16.15083 -15.29786 -15.15042 -14.74273 -14.17893 -14.10494 -13.83003 -13.71143 -13.60727 -13.27888 -13.26346 -13.08178 -12.67549 -12.30892 -11.90159 -11.40988 -10.95057 -10.81186 -10.19908 -10.03693 -9.80480 -9.53721 -9.00704 -8.90386 -6.99329 -5.77880 -3.08798 0.89514 1.07001 2.90431 3.44180 3.48319 3.49373 3.65724 3.95875 4.27252 4.41673 4.58524 4.77864 4.84819 4.93186 5.06473 5.40977 5.54262 5.68359 5.73183 5.94663 6.03494 6.39111 6.52737 6.62254 7.66798 7.87450 8.37824 9.50309 10.01508 10.37602 11.44275 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.008097 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.352146 B = 3457.181404 C = 3976.777610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.720 5.720 10 C 0.173 3.827 11 C -0.078 4.078 12 C 0.113 3.887 13 N -0.466 5.466 14 C 0.089 3.911 15 C -0.132 4.132 16 C -0.127 4.127 17 C 0.506 3.494 18 F -0.186 7.186 19 F -0.140 7.140 20 F -0.175 7.175 21 H 0.256 0.744 22 H 0.387 0.613 23 H 0.041 0.959 24 H 0.041 0.959 25 H 0.168 0.832 26 H 0.163 0.837 27 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.076 -13.468 -2.848 13.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.365 5.365 10 C 0.045 3.955 11 C -0.080 4.080 12 C -0.044 4.044 13 N -0.174 5.174 14 C -0.068 4.068 15 C -0.152 4.152 16 C -0.137 4.137 17 C 0.451 3.549 18 F -0.167 7.167 19 F -0.121 7.121 20 F -0.157 7.157 21 H 0.066 0.934 22 H 0.221 0.779 23 H 0.059 0.941 24 H 0.059 0.941 25 H 0.185 0.815 26 H 0.180 0.820 27 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -0.126 -13.730 -2.096 13.890 hybrid contribution 0.296 1.470 -1.079 1.847 sum 0.170 -12.260 -3.174 12.666 Atomic orbital electron populations 1.69657 1.05150 1.25878 1.56980 1.24737 0.95492 0.97651 1.02514 0.86250 0.78519 0.83383 0.77883 1.21180 1.21677 1.21188 1.19129 0.90999 0.83638 1.43646 0.91020 1.42263 1.05821 0.98815 1.89618 1.19889 0.91646 0.83474 1.00470 1.21201 0.97058 0.97337 0.92443 1.22833 0.93638 0.90572 0.97405 1.67695 1.06416 1.12663 1.30621 1.22729 0.97804 0.98958 0.87291 1.22001 0.97144 0.95080 1.00954 1.20419 1.01119 0.98668 0.93469 1.18141 0.74416 0.78716 0.83579 1.93129 1.77013 1.84267 1.62339 1.93452 1.91483 1.31363 1.95773 1.93174 1.32340 1.95978 1.94158 0.93377 0.77914 0.94100 0.94114 0.81507 0.81975 0.83604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.06 55.49 0.72 -27.33 15 2 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 15 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 15 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 15 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 15 6 H -0.29 -6.86 7.11 56.52 0.40 -6.46 15 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 15 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 15 9 N -0.72 -17.96 4.23 -61.09 -0.26 -18.22 15 10 C 0.17 3.43 5.65 -5.19 -0.03 3.40 15 11 C -0.08 -1.33 5.24 -104.48 -0.55 -1.88 15 12 C 0.11 1.74 10.83 -17.55 -0.19 1.55 15 13 N -0.47 -6.82 10.36 -13.25 -0.14 -6.96 15 14 C 0.09 1.10 11.18 -17.55 -0.20 0.91 15 15 C -0.13 -1.72 9.50 -39.44 -0.37 -2.10 15 16 C -0.13 -2.05 5.40 -104.32 -0.56 -2.61 15 17 C 0.51 8.82 2.88 36.00 0.10 8.92 15 18 F -0.19 -2.88 16.08 2.25 0.04 -2.84 15 19 F -0.14 -3.01 15.09 2.25 0.03 -2.97 15 20 F -0.18 -3.07 15.49 2.25 0.03 -3.03 15 21 H 0.26 7.51 8.31 -40.82 -0.34 7.17 15 22 H 0.39 10.37 7.32 -40.82 -0.30 10.07 15 23 H 0.04 0.77 8.02 -51.93 -0.42 0.35 15 24 H 0.04 0.83 6.12 -51.93 -0.32 0.51 15 25 H 0.17 2.27 8.04 -52.49 -0.42 1.84 15 26 H 0.16 1.39 8.06 -52.48 -0.42 0.97 15 27 H 0.15 1.52 7.27 -52.49 -0.38 1.14 15 LS Contribution 252.30 15.07 3.80 3.80 Total: -1.00 -30.82 252.30 -4.64 -35.45 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -1.80 Total: 3.78 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: -2.04 Total: 1.02 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: 0.33 Total: -52.50 kcal Atomic # 9 Polarization: -8.95 SS G_CDS: 0.11 Total: -8.85 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -30.82 -4.64 -35.45 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700779934.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.367 kcal (2) G-P(sol) polarization free energy of solvation -30.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds