Wall clock time and date at job start Mon Mar 30 2020 03:56:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86806 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47204 * 240.00518 * 3 2 1 5 5 H 1.48501 * 109.47067 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47209 * 120.00411 * 3 2 1 7 7 C 1.38814 * 120.00326 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00202 * 179.97438 * 7 2 1 9 9 N 1.36938 * 119.99857 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00034 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47112 * 179.97438 * 10 9 7 12 12 C 1.38220 * 120.41702 * 259.99894 * 11 10 9 13 13 N 1.31860 * 120.76174 * 179.97438 * 12 11 10 14 14 C 1.31880 * 121.72574 * 359.97438 * 13 12 11 15 15 C 1.38185 * 120.76785 * 359.97438 * 14 13 12 16 16 C 1.38625 * 120.41524 * 79.95306 * 11 10 9 17 17 C 1.50699 * 120.79555 * 0.02769 * 16 11 10 18 18 F 1.39901 * 109.46994 * 180.02562 * 17 16 11 19 19 F 1.39899 * 109.46800 * 299.99641 * 17 16 11 20 20 F 1.39896 * 109.47074 * 59.99542 * 17 16 11 21 21 H 0.96993 * 120.00234 * 359.97438 * 1 2 3 22 22 H 0.97002 * 119.99714 * 359.97438 * 9 7 2 23 23 H 1.08996 * 109.46994 * 59.99488 * 10 9 7 24 24 H 1.09001 * 109.47246 * 299.99882 * 10 9 7 25 25 H 1.08001 * 119.62033 * 359.95681 * 12 11 10 26 26 H 1.08003 * 119.62232 * 180.02562 * 14 13 12 27 27 H 1.07995 * 120.42231 * 179.74997 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2126 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0582 -3.6568 -0.0005 11 6 1.0789 -4.8023 0.0001 12 6 0.7819 -5.4684 1.1742 13 7 -0.0742 -6.4712 1.1827 14 6 -0.6780 -6.8769 0.0826 15 6 -0.4316 -6.2583 -1.1282 16 6 0.4638 -5.2004 -1.1767 17 6 0.7603 -4.4998 -2.4776 18 9 0.0157 -5.0892 -3.5049 19 9 0.4153 -3.1484 -2.3684 20 9 2.1245 -4.6109 -2.7667 21 1 -0.4850 0.8400 0.0004 22 1 0.3556 -2.3880 0.0002 23 1 2.6849 -3.7144 0.8894 24 1 2.6848 -3.7145 -0.8905 25 1 1.2568 -5.1643 2.0953 26 1 -1.3736 -7.7018 0.1286 27 1 -0.9261 -6.5977 -2.0263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700779934.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:37 Heat of formation + Delta-G solvation = -117.759543 kcal Electronic energy + Delta-G solvation = -18121.732221 eV Core-core repulsion = 14657.422986 eV Total energy + Delta-G solvation = -3464.309235 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.19221 -48.74780 -48.56974 -41.39901 -36.89896 -34.61348 -33.55711 -31.77275 -28.21267 -27.14875 -24.95963 -23.87808 -22.73499 -19.68124 -19.61961 -19.43610 -19.23186 -17.35129 -16.82567 -16.43665 -16.27455 -15.67162 -15.53160 -15.30462 -15.18856 -15.02640 -14.78110 -14.74924 -14.67008 -14.09850 -13.86358 -13.25956 -13.09095 -12.74233 -12.59048 -12.14091 -11.89964 -11.21248 -10.99377 -10.66783 -10.16547 -9.02544 -7.93369 -5.23519 -0.29316 -0.04284 1.48350 1.51394 1.57109 1.57642 2.49203 2.60033 2.64146 2.97479 3.35946 3.39004 3.40104 3.67825 3.74890 3.91507 4.16945 4.32015 4.46767 4.66584 4.76202 4.84032 5.10446 5.49371 5.50086 6.25401 6.77368 7.33643 8.02196 8.28105 9.29623 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027435 B = 0.008097 C = 0.007039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.352146 B = 3457.181404 C = 3976.777610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.069 4.069 3 Si 0.973 3.027 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.275 1.275 7 C -0.245 4.245 8 H 0.078 0.922 9 N -0.730 5.730 10 C 0.175 3.825 11 C -0.101 4.101 12 C 0.112 3.888 13 N -0.476 5.476 14 C 0.104 3.896 15 C -0.123 4.123 16 C -0.138 4.138 17 C 0.504 3.496 18 F -0.173 7.173 19 F -0.170 7.170 20 F -0.179 7.179 21 H 0.251 0.749 22 H 0.374 0.626 23 H 0.053 0.947 24 H 0.035 0.965 25 H 0.178 0.822 26 H 0.209 0.791 27 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.161 -15.067 -2.750 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.617 5.617 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.206 1.206 5 H -0.223 1.223 6 H -0.201 1.201 7 C -0.376 4.376 8 H 0.096 0.904 9 N -0.373 5.373 10 C 0.048 3.952 11 C -0.103 4.103 12 C -0.045 4.045 13 N -0.184 5.184 14 C -0.053 4.053 15 C -0.143 4.143 16 C -0.148 4.148 17 C 0.450 3.550 18 F -0.155 7.155 19 F -0.151 7.151 20 F -0.160 7.160 21 H 0.059 0.941 22 H 0.206 0.794 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.195 0.805 26 H 0.225 0.775 27 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -0.163 -15.362 -1.991 15.491 hybrid contribution 0.303 1.790 -1.163 2.156 sum 0.141 -13.572 -3.154 13.934 Atomic orbital electron populations 1.69818 1.06659 1.26096 1.59121 1.25527 0.96292 1.00949 1.03391 0.85231 0.77202 0.79198 0.78206 1.20637 1.22292 1.20071 1.19546 0.91507 0.84858 1.41683 0.90379 1.42381 1.05372 1.00042 1.89497 1.19895 0.92186 0.82687 1.00396 1.20935 0.98136 0.97515 0.93743 1.22957 0.93783 0.90612 0.97127 1.67799 1.06528 1.12425 1.31683 1.23515 0.96803 0.98906 0.86119 1.22384 0.95716 0.93544 1.02613 1.20485 1.02309 0.99773 0.92270 1.18339 0.74327 0.77625 0.84724 1.93143 1.76630 1.83775 1.61925 1.93389 1.91758 1.33935 1.96011 1.93159 1.32704 1.95879 1.94280 0.94052 0.79361 0.92907 0.94693 0.80510 0.77465 0.80614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.60 13.06 21.65 0.28 -59.31 15 2 C -0.07 -3.97 5.50 84.86 0.47 -3.51 15 3 Si 0.97 46.31 29.55 68.60 2.03 48.33 15 4 H -0.28 -12.95 7.11 99.48 0.71 -12.24 15 5 H -0.30 -14.27 7.11 99.48 0.71 -13.56 15 6 H -0.27 -12.47 7.11 99.48 0.71 -11.77 15 7 C -0.24 -13.59 9.99 84.03 0.84 -12.76 15 8 H 0.08 4.14 7.83 -2.91 -0.02 4.11 15 9 N -0.73 -36.91 4.23 -347.17 -1.47 -38.38 15 10 C 0.17 6.96 5.65 85.63 0.48 7.45 15 11 C -0.10 -3.37 5.24 -19.78 -0.10 -3.47 15 12 C 0.11 3.28 10.83 84.68 0.92 4.19 15 13 N -0.48 -12.62 10.36 -195.84 -2.03 -14.65 15 14 C 0.10 2.16 11.18 84.67 0.95 3.10 15 15 C -0.12 -2.82 9.50 22.36 0.21 -2.61 15 16 C -0.14 -4.30 5.40 -19.67 -0.11 -4.41 15 17 C 0.50 17.34 2.88 71.24 0.21 17.54 15 18 F -0.17 -5.12 16.08 44.97 0.72 -4.39 15 19 F -0.17 -7.44 15.09 44.97 0.68 -6.77 15 20 F -0.18 -6.24 15.49 44.97 0.70 -5.55 15 21 H 0.25 15.04 8.31 -92.71 -0.77 14.27 15 22 H 0.37 20.56 7.32 -92.71 -0.68 19.88 15 23 H 0.05 1.97 8.02 -2.39 -0.02 1.95 15 24 H 0.04 1.44 6.12 -2.39 -0.01 1.43 15 25 H 0.18 4.61 8.04 -2.91 -0.02 4.59 15 26 H 0.21 2.38 8.06 -2.91 -0.02 2.36 15 27 H 0.18 2.93 7.27 -2.91 -0.02 2.90 15 Total: -1.00 -66.58 252.30 5.32 -61.26 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: 0.55 Total: 13.91 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 3.86 Total: 5.54 kcal Atomic # 7 Polarization: -109.12 SS G_CDS: -3.21 Total: -112.34 kcal Atomic # 9 Polarization: -18.80 SS G_CDS: 2.10 Total: -16.70 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.33 kcal Total: -66.58 5.32 -61.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700779934.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.502 kcal (2) G-P(sol) polarization free energy of solvation -66.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds