Wall clock time and date at job start Mon Mar 30 2020 03:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48498 * 109.46965 * 239.99397 * 3 2 1 5 5 H 1.48500 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47069 * 119.99756 * 3 2 1 7 7 C 1.38796 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00261 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47016 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 O 1.42902 * 112.93577 * 55.33318 * 15 14 13 17 17 C 1.53934 * 113.73216 * 283.77179 * 15 14 13 18 18 N 1.48194 * 86.09921 * 221.95463 * 17 15 14 19 19 C 1.47962 * 90.79652 * 24.60017 * 18 17 15 20 20 H 0.97001 * 119.99673 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46527 * 60.00365 * 10 9 7 22 22 H 1.08993 * 109.47047 * 299.99857 * 10 9 7 23 23 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 24 24 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 25 25 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 26 26 H 0.96699 * 114.00121 * 309.67274 * 16 15 14 27 27 H 1.08995 * 113.76303 * 336.23445 * 17 15 14 28 28 H 1.08998 * 113.76105 * 107.60878 * 17 15 14 29 29 H 1.00897 * 111.07366 * 137.51925 * 18 17 15 30 30 H 1.09003 * 113.75902 * 221.08139 * 19 18 17 31 31 H 1.08997 * 113.76162 * 89.71939 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 -0.0010 13 7 2.8440 -6.3431 0.0003 14 6 2.3301 -7.7151 0.0003 15 6 3.5022 -8.6986 0.0001 16 8 4.4100 -8.4832 1.0825 17 6 4.1923 -8.8398 -1.3686 18 7 4.2334 -10.2937 -1.0845 19 6 3.0776 -10.1685 -0.1693 20 1 -0.4850 0.8401 -0.0004 21 1 3.1243 -3.7313 0.8906 22 1 3.1243 -3.7314 -0.8894 23 1 3.8007 -6.1836 0.0006 24 1 1.7219 -7.8752 -0.8900 25 1 1.7213 -7.8751 0.8900 26 1 4.7019 -7.5660 1.1745 27 1 3.5543 -8.5749 -2.2116 28 1 5.1759 -8.3724 -1.4148 29 1 3.9896 -10.8304 -1.9034 30 1 3.1720 -10.7606 0.7410 31 1 2.1127 -10.2929 -0.6607 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000700972681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:47 Heat of formation + Delta-G solvation = -50.880412 kcal Electronic energy + Delta-G solvation = -15355.205059 eV Core-core repulsion = 12571.096612 eV Total energy + Delta-G solvation = -2784.108447 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.57474 -38.93322 -35.69652 -34.19735 -32.46188 -30.25212 -28.02780 -26.50279 -25.53188 -24.16076 -20.59206 -20.22706 -18.22703 -17.21136 -16.98470 -16.40390 -15.56429 -15.42853 -14.98909 -14.83103 -14.27685 -13.88379 -13.50941 -13.36508 -13.08954 -12.64482 -12.54759 -12.26888 -11.85052 -11.13244 -11.07815 -11.06081 -10.79009 -10.24840 -9.86481 -9.55717 -9.31857 -9.11077 -9.04840 -8.29226 -6.54648 -6.24827 -3.96225 2.89387 2.97666 3.21495 3.24421 3.27490 3.40304 3.57299 3.79043 4.09677 4.17333 4.32484 4.83776 4.88493 5.05159 5.10428 5.18181 5.31169 5.35059 5.51683 5.57031 5.65650 5.72654 5.81757 6.06675 6.38562 6.78103 7.23075 7.50790 7.56205 8.31593 8.47413 9.20407 10.82554 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.058664 B = 0.004053 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.179106 B = 6906.024800 C = 7146.084584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.740 5.740 14 C 0.101 3.899 15 C 0.095 3.905 16 O -0.526 6.526 17 C -0.020 4.020 18 N -0.626 5.626 19 C 0.023 3.977 20 H 0.269 0.731 21 H 0.091 0.909 22 H 0.090 0.910 23 H 0.395 0.605 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.378 0.622 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.320 0.680 30 H 0.100 0.900 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 -16.297 -1.920 18.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.305 4.305 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.396 5.396 14 C -0.025 4.025 15 C 0.053 3.947 16 O -0.332 6.332 17 C -0.151 4.151 18 N -0.251 5.251 19 C -0.108 4.108 20 H 0.079 0.921 21 H 0.109 0.891 22 H 0.109 0.891 23 H 0.229 0.771 24 H 0.095 0.905 25 H 0.097 0.903 26 H 0.227 0.773 27 H 0.096 0.904 28 H 0.113 0.887 29 H 0.133 0.867 30 H 0.119 0.881 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.075 -17.319 -1.350 18.757 hybrid contribution 1.693 2.107 -0.717 2.797 sum 8.768 -15.212 -2.067 17.679 Atomic orbital electron populations 1.70006 1.05974 1.27631 1.46662 1.24992 0.95031 0.99049 0.94446 0.86217 0.79236 0.81175 0.78824 1.19924 1.20791 1.19897 1.22826 0.94885 0.91619 1.59250 0.90927 1.85415 1.04779 0.96350 1.96742 1.23534 1.06725 0.95163 1.05028 1.20345 0.86473 0.86230 0.74962 1.90714 1.15328 1.85535 1.47137 1.45912 1.09807 1.05330 1.78547 1.21921 0.95868 0.81077 1.03584 1.22931 0.89182 0.95365 0.87269 1.86569 1.63762 1.32891 1.49930 1.24522 1.02233 0.91112 0.97205 1.66953 1.36130 1.06288 1.15732 1.23819 0.94046 0.93752 0.99144 0.92082 0.89069 0.89133 0.77121 0.90451 0.90331 0.77304 0.90397 0.88726 0.86722 0.88141 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.96 6.16 36.01 0.22 -2.74 16 11 C 0.53 9.43 7.85 -10.98 -0.09 9.34 16 12 O -0.51 -11.28 15.86 5.56 0.09 -11.19 16 13 N -0.74 -8.88 5.33 -60.29 -0.32 -9.20 16 14 C 0.10 1.09 5.26 -4.04 -0.02 1.07 16 15 C 0.10 0.86 1.48 -89.69 -0.13 0.73 16 16 O -0.53 -5.30 13.50 -35.23 -0.48 -5.77 16 17 C -0.02 -0.16 8.32 -2.63 -0.02 -0.19 16 18 N -0.63 -5.44 8.53 -116.75 -1.00 -6.43 16 19 C 0.02 0.19 8.31 -2.76 -0.02 0.17 16 20 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 21 H 0.09 1.61 8.14 -51.92 -0.42 1.18 16 22 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 23 H 0.39 3.48 7.42 -40.82 -0.30 3.17 16 24 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.38 2.69 7.73 45.56 0.35 3.04 16 27 H 0.08 0.57 8.06 -51.93 -0.42 0.15 16 28 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.32 2.16 8.92 -39.29 -0.35 1.81 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.53 8.10 -51.93 -0.42 0.11 16 LS Contribution 285.39 15.07 4.30 4.30 Total: -1.00 -35.00 285.39 -6.99 -41.99 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -3.22 Total: 3.60 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: 0.13 Total: -4.43 kcal Atomic # 7 Polarization: -40.23 SS G_CDS: -0.58 Total: -40.82 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: -0.39 Total: -16.97 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -35.00 -6.99 -41.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700972681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.889 kcal (2) G-P(sol) polarization free energy of solvation -35.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds