Wall clock time and date at job start Mon Mar 30 2020 03:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86805 * 120.00064 * 2 1 4 4 H 1.48498 * 109.46965 * 239.99397 * 3 2 1 5 5 H 1.48500 * 109.47125 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.47069 * 119.99756 * 3 2 1 7 7 C 1.38796 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00261 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99910 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00065 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47016 * 180.02562 * 10 9 7 12 12 O 1.21279 * 119.99926 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99773 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99531 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46883 * 179.97438 * 14 13 11 16 16 O 1.42902 * 112.93577 * 55.33318 * 15 14 13 17 17 C 1.53934 * 113.73216 * 283.77179 * 15 14 13 18 18 N 1.48194 * 86.09921 * 221.95463 * 17 15 14 19 19 C 1.47962 * 90.79652 * 24.60017 * 18 17 15 20 20 H 0.97001 * 119.99673 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46527 * 60.00365 * 10 9 7 22 22 H 1.08993 * 109.47047 * 299.99857 * 10 9 7 23 23 H 0.96992 * 120.00503 * 359.97438 * 13 11 10 24 24 H 1.09001 * 109.46891 * 60.00097 * 14 13 11 25 25 H 1.08993 * 109.47378 * 299.99469 * 14 13 11 26 26 H 0.96699 * 114.00121 * 309.67274 * 16 15 14 27 27 H 1.08995 * 113.76303 * 336.23445 * 17 15 14 28 28 H 1.08998 * 113.76105 * 107.60878 * 17 15 14 29 29 H 1.00897 * 111.07366 * 137.51925 * 18 17 15 30 30 H 1.09003 * 113.75902 * 221.08139 * 19 18 17 31 31 H 1.08997 * 113.76162 * 89.71939 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 -0.0010 13 7 2.8440 -6.3431 0.0003 14 6 2.3301 -7.7151 0.0003 15 6 3.5022 -8.6986 0.0001 16 8 4.4100 -8.4832 1.0825 17 6 4.1923 -8.8398 -1.3686 18 7 4.2334 -10.2937 -1.0845 19 6 3.0776 -10.1685 -0.1693 20 1 -0.4850 0.8401 -0.0004 21 1 3.1243 -3.7313 0.8906 22 1 3.1243 -3.7314 -0.8894 23 1 3.8007 -6.1836 0.0006 24 1 1.7219 -7.8752 -0.8900 25 1 1.7213 -7.8751 0.8900 26 1 4.7019 -7.5660 1.1745 27 1 3.5543 -8.5749 -2.2116 28 1 5.1759 -8.3724 -1.4148 29 1 3.9896 -10.8304 -1.9034 30 1 3.1720 -10.7606 0.7410 31 1 2.1127 -10.2929 -0.6607 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000700972681.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:46 Heat of formation + Delta-G solvation = -82.801598 kcal Electronic energy + Delta-G solvation = -15356.589265 eV Core-core repulsion = 12571.096612 eV Total energy + Delta-G solvation = -2785.492653 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.40669 -40.20064 -36.50297 -35.34675 -34.57966 -31.58967 -29.11527 -27.64770 -27.13222 -25.04204 -21.89970 -20.93622 -19.97155 -18.48785 -17.72234 -17.65841 -16.87478 -16.72393 -16.49354 -16.07630 -15.65146 -15.13820 -14.66162 -14.44839 -14.20350 -14.03858 -13.55783 -13.16828 -13.11949 -12.93888 -12.85651 -12.63846 -11.90994 -11.71154 -11.12460 -11.02505 -10.96200 -10.27987 -10.25966 -9.92702 -8.66688 -8.34320 -6.12587 1.26186 1.44636 1.46822 1.56268 1.56746 2.16220 2.28191 2.76581 3.00093 3.11915 3.27494 3.36091 3.60526 3.94042 4.14927 4.30084 4.30707 4.49415 4.51591 4.61692 4.64119 4.76830 4.92499 5.05654 5.27905 5.42208 6.19915 6.23340 6.37611 6.63284 7.07180 7.17123 8.74604 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.058664 B = 0.004053 C = 0.003917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.179106 B = 6906.024800 C = 7146.084584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.153 6.153 10 C -0.130 4.130 11 C 0.537 3.463 12 O -0.563 6.563 13 N -0.711 5.711 14 C 0.104 3.896 15 C 0.099 3.901 16 O -0.541 6.541 17 C -0.015 4.015 18 N -0.641 5.641 19 C 0.022 3.978 20 H 0.271 0.729 21 H 0.112 0.888 22 H 0.113 0.887 23 H 0.414 0.586 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.390 0.610 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.332 0.668 30 H 0.093 0.907 31 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.902 -16.581 -2.288 19.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.819 3.181 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.074 5.926 10 C -0.281 4.281 11 C 0.323 3.677 12 O -0.441 6.441 13 N -0.367 5.367 14 C -0.021 4.021 15 C 0.057 3.943 16 O -0.349 6.349 17 C -0.145 4.145 18 N -0.267 5.267 19 C -0.108 4.108 20 H 0.080 0.920 21 H 0.131 0.869 22 H 0.131 0.869 23 H 0.252 0.748 24 H 0.098 0.902 25 H 0.084 0.916 26 H 0.240 0.760 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.145 0.855 30 H 0.112 0.888 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.391 -17.639 -1.721 20.057 hybrid contribution 1.052 2.044 -0.596 2.375 sum 10.443 -15.596 -2.317 18.912 Atomic orbital electron populations 1.70176 1.07997 1.28678 1.47959 1.26116 0.95932 1.03310 0.93705 0.85015 0.77807 0.75726 0.79524 1.18608 1.20523 1.18650 1.23188 0.95408 0.91994 1.58971 0.89764 1.85596 1.10596 0.99298 1.97078 1.23375 1.03596 0.94073 1.07071 1.20065 0.86148 0.86622 0.74882 1.90707 1.17446 1.86058 1.49878 1.45571 1.10233 1.04779 1.76077 1.22004 0.96721 0.80222 1.03124 1.22917 0.88457 0.95190 0.87778 1.86560 1.63831 1.34074 1.50391 1.24525 1.02442 0.90872 0.96657 1.66923 1.36523 1.06771 1.16518 1.23901 0.94930 0.92833 0.99133 0.92001 0.86945 0.86909 0.74824 0.90230 0.91591 0.76021 0.89352 0.88403 0.85468 0.88814 0.87945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.46 13.22 21.65 0.29 -55.18 16 2 C 0.01 0.80 5.49 84.86 0.47 1.26 16 3 Si 1.00 42.85 29.55 68.60 2.03 44.87 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -30.67 9.50 67.95 0.65 -30.02 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.31 16 9 S -0.15 -8.28 20.57 -56.49 -1.16 -9.45 16 10 C -0.13 -4.83 6.16 71.24 0.44 -4.39 16 11 C 0.54 18.38 7.85 87.66 0.69 19.07 16 12 O -0.56 -24.94 15.86 -3.03 -0.05 -24.99 16 13 N -0.71 -15.51 5.33 -463.05 -2.47 -17.98 16 14 C 0.10 2.07 5.26 86.38 0.45 2.52 16 15 C 0.10 1.58 1.48 -10.15 -0.02 1.56 16 16 O -0.54 -9.72 13.50 -148.98 -2.01 -11.73 16 17 C -0.01 -0.20 8.32 86.36 0.72 0.52 16 18 N -0.64 -9.69 8.53 -526.49 -4.49 -14.18 16 19 C 0.02 0.33 8.31 86.41 0.72 1.04 16 20 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 21 H 0.11 3.71 8.14 -2.40 -0.02 3.69 16 22 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 23 H 0.41 5.98 7.42 -92.71 -0.69 5.29 16 24 H 0.08 1.62 8.09 -2.39 -0.02 1.60 16 25 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 26 H 0.39 4.55 7.73 -74.06 -0.57 3.97 16 27 H 0.09 1.03 8.06 -2.39 -0.02 1.01 16 28 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.33 3.71 8.92 -89.70 -0.80 2.91 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 1.07 8.10 -2.39 -0.02 1.06 16 Total: -1.00 -77.00 285.39 -4.64 -81.65 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -0.89 Total: 15.43 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: 4.11 Total: -8.44 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -6.68 Total: -87.34 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -2.06 Total: -36.72 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.45 kcal Total: -77.00 -4.64 -81.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000700972681.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.156 kcal (2) G-P(sol) polarization free energy of solvation -77.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds