Wall clock time and date at job start Mon Mar 30 2020 03:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86797 * 119.99895 * 2 1 4 4 H 1.48508 * 109.47286 * 240.00057 * 3 2 1 5 5 H 1.48499 * 109.47483 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47098 * 120.00062 * 3 2 1 7 7 C 1.38796 * 120.00133 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00245 * 179.97438 * 7 2 1 9 9 S 1.76205 * 120.00010 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00004 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47094 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00263 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00226 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00291 * 180.02562 * 13 11 10 15 15 H 1.08996 * 110.62893 * 323.34361 * 14 13 11 16 16 C 1.54316 * 110.70710 * 86.45102 * 14 13 11 17 17 N 1.47446 * 107.23320 * 140.66788 * 16 14 13 18 18 C 1.47843 * 108.56761 * 0.99070 * 17 16 14 19 19 C 1.54904 * 104.79405 * 335.90448 * 18 17 16 20 20 H 1.09002 * 111.02489 * 278.96097 * 19 18 17 21 21 O 1.42900 * 110.99103 * 155.16291 * 19 18 17 22 22 H 0.96997 * 120.00130 * 0.02562 * 1 2 3 23 23 H 1.09006 * 109.47080 * 59.99935 * 10 9 7 24 24 H 1.08997 * 109.47163 * 300.00035 * 10 9 7 25 25 H 0.97007 * 119.99630 * 359.97438 * 13 11 10 26 26 H 1.08997 * 109.89177 * 21.26459 * 16 14 13 27 27 H 1.08994 * 109.89296 * 260.07224 * 16 14 13 28 28 H 1.00903 * 111.00060 * 123.26122 * 17 16 14 29 29 H 1.08998 * 110.37465 * 94.73106 * 18 17 16 30 30 H 1.09003 * 110.37404 * 217.07863 * 18 17 16 31 31 H 0.96704 * 114.00277 * 67.73317 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6965 -1.2126 5 1 1.2854 2.7465 -0.0006 6 1 3.1041 1.6964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9875 -5.3027 0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0007 14 6 2.3305 -7.7151 0.0008 15 1 1.4292 -7.7876 0.6094 16 6 2.0562 -8.1950 -1.4399 17 7 2.4777 -9.6058 -1.5181 18 6 2.9752 -10.0228 -0.1898 19 6 3.4146 -8.7067 0.4991 20 1 4.4061 -8.4021 0.1640 21 8 3.3753 -8.8357 1.9217 22 1 -0.4850 0.8400 -0.0004 23 1 3.1246 -3.7313 0.8895 24 1 3.1245 -3.7313 -0.8905 25 1 3.8011 -6.1834 0.0004 26 1 2.6316 -7.5965 -2.1461 27 1 0.9922 -8.1132 -1.6619 28 1 1.7160 -10.1946 -1.8202 29 1 2.1792 -10.5020 0.3802 30 1 3.8250 -10.6969 -0.2972 31 1 4.0350 -9.4454 2.2798 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701023114.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:44 Heat of formation + Delta-G solvation = -113.239038 kcal Electronic energy + Delta-G solvation = -15465.264386 eV Core-core repulsion = 12678.451866 eV Total energy + Delta-G solvation = -2786.812519 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.12325 -39.48555 -36.62938 -35.17940 -34.58455 -31.44117 -29.26499 -28.68774 -27.61796 -22.99891 -22.25365 -21.63780 -19.86548 -18.76305 -17.95824 -17.75583 -16.88037 -16.75641 -16.44914 -16.10885 -15.38580 -14.88821 -14.55715 -14.42478 -14.25368 -13.92225 -13.55325 -13.48775 -13.17567 -13.01604 -12.85858 -12.62577 -11.82993 -11.70462 -11.25770 -11.12886 -10.95727 -10.32267 -10.29382 -9.51918 -8.67826 -8.34642 -6.13392 1.25020 1.44460 1.45872 1.54026 1.55991 2.16076 2.27598 2.83309 2.99561 3.29148 3.37276 3.54063 3.64383 3.93587 3.96807 4.19774 4.27268 4.32136 4.48706 4.59562 4.81502 4.83155 4.88935 5.37692 5.41443 5.63820 6.19498 6.26100 6.41528 6.82826 7.06428 7.16934 8.74475 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.055743 B = 0.004285 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 502.185719 B = 6532.342819 C = 6692.683232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.084 0.916 9 S -0.151 6.151 10 C -0.128 4.128 11 C 0.536 3.464 12 O -0.564 6.564 13 N -0.701 5.701 14 C 0.126 3.874 15 H 0.070 0.930 16 C 0.041 3.959 17 N -0.675 5.675 18 C 0.021 3.979 19 C 0.096 3.904 20 H 0.100 0.900 21 O -0.574 6.574 22 H 0.271 0.729 23 H 0.109 0.891 24 H 0.113 0.887 25 H 0.418 0.582 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.353 0.647 29 H 0.057 0.943 30 H 0.111 0.889 31 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.127 -19.179 -0.294 22.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.821 3.179 4 H -0.186 1.186 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.102 0.898 9 S 0.076 5.924 10 C -0.279 4.279 11 C 0.322 3.678 12 O -0.442 6.442 13 N -0.355 5.355 14 C 0.020 3.980 15 H 0.088 0.912 16 C -0.089 4.089 17 N -0.307 5.307 18 C -0.109 4.109 19 C 0.036 3.964 20 H 0.118 0.882 21 O -0.383 6.383 22 H 0.080 0.920 23 H 0.128 0.872 24 H 0.132 0.868 25 H 0.255 0.745 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.170 0.830 29 H 0.075 0.925 30 H 0.129 0.871 31 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 10.157 -18.883 -0.624 21.451 hybrid contribution 1.224 0.892 0.569 1.618 sum 11.381 -17.992 -0.055 21.289 Atomic orbital electron populations 1.70180 1.08022 1.28711 1.47929 1.26135 0.95951 1.03337 0.93639 0.84993 0.77796 0.75607 0.79531 1.18572 1.20397 1.18652 1.23184 0.95394 0.91949 1.59068 0.89818 1.85587 1.10500 0.99265 1.97072 1.23359 1.03640 0.94003 1.06948 1.20139 0.86235 0.86739 0.74691 1.90688 1.17406 1.86055 1.50020 1.45603 1.10278 1.04163 1.75475 1.22121 0.97942 0.81148 0.96840 0.91188 1.22881 1.00075 0.90752 0.95242 1.61870 1.39806 1.02262 1.26765 1.23517 1.01654 0.96893 0.88821 1.23097 0.98186 0.93687 0.81393 0.88207 1.86552 1.62552 1.69673 1.19499 0.91970 0.87242 0.86842 0.74483 0.89977 0.93051 0.82972 0.92484 0.87081 0.74548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.41 13.22 21.65 0.29 -56.13 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.66 29.55 68.60 2.03 45.68 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 7 C -0.55 -31.49 9.50 67.95 0.65 -30.85 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.50 20.57 -56.49 -1.16 -9.67 16 10 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 11 C 0.54 20.33 7.84 87.66 0.69 21.02 16 12 O -0.56 -26.78 15.59 -3.03 -0.05 -26.83 16 13 N -0.70 -18.66 5.13 -436.97 -2.24 -20.90 16 14 C 0.13 3.10 2.97 46.17 0.14 3.24 16 15 H 0.07 2.21 7.69 -2.39 -0.02 2.20 16 16 C 0.04 0.92 7.33 86.64 0.64 1.56 16 17 N -0.68 -11.18 7.39 -504.45 -3.73 -14.91 16 18 C 0.02 0.27 7.31 86.77 0.63 0.91 16 19 C 0.10 1.55 4.03 31.98 0.13 1.68 16 20 H 0.10 1.21 8.00 -2.39 -0.02 1.20 16 21 O -0.57 -9.73 13.47 -148.98 -2.01 -11.74 16 22 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 23 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 24 H 0.11 4.03 8.14 -2.40 -0.02 4.01 16 25 H 0.42 8.11 8.52 -92.70 -0.79 7.32 16 26 H 0.08 1.90 8.03 -2.39 -0.02 1.88 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.35 4.93 8.91 -89.69 -0.80 4.13 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.40 2.50 9.12 -74.05 -0.68 1.83 16 Total: -1.00 -78.85 283.97 -4.19 -83.05 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -1.09 Total: 17.32 kcal Atomic # 6 Polarization: -9.66 SS G_CDS: 3.77 Total: -5.88 kcal Atomic # 7 Polarization: -86.25 SS G_CDS: -5.68 Total: -91.94 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -2.05 Total: -38.56 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.68 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.67 kcal Total: -78.85 -4.19 -83.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701023114.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.194 kcal (2) G-P(sol) polarization free energy of solvation -78.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds