Wall clock time and date at job start Mon Mar 30 2020 03:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86794 * 120.00079 * 2 1 4 4 H 1.48500 * 109.46963 * 239.99613 * 3 2 1 5 5 H 1.48502 * 109.47363 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47564 * 119.99705 * 3 2 1 7 7 C 1.38795 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 180.02562 * 7 2 1 9 9 S 1.76204 * 120.00282 * 0.02562 * 7 2 1 10 10 C 1.80994 * 100.00333 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47338 * 179.97438 * 10 9 7 12 12 O 1.21284 * 120.00109 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46506 * 119.99873 * 179.97438 * 13 11 10 15 15 H 1.08995 * 110.29112 * 324.32957 * 14 13 11 16 16 C 1.54377 * 110.32322 * 86.45752 * 14 13 11 17 17 N 1.48563 * 104.59757 * 142.74391 * 16 14 13 18 18 C 1.48560 * 104.22113 * 320.51911 * 17 16 14 19 19 C 1.54256 * 110.32181 * 202.09240 * 14 13 11 20 20 H 1.08996 * 110.32546 * 122.20991 * 19 14 13 21 21 O 1.42899 * 110.32773 * 0.02562 * 19 14 13 22 22 H 0.97002 * 119.99546 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.47169 * 59.99896 * 10 9 7 24 24 H 1.09000 * 109.47035 * 299.99863 * 10 9 7 25 25 H 0.96995 * 120.00018 * 0.27749 * 13 11 10 26 26 H 1.08994 * 110.41287 * 261.52935 * 16 14 13 27 27 H 1.09005 * 110.41267 * 23.96687 * 16 14 13 28 28 H 1.00899 * 110.98979 * 80.07464 * 17 16 14 29 29 H 1.08994 * 110.41089 * 158.25489 * 18 17 16 30 30 H 1.08992 * 110.41359 * 280.58217 * 18 17 16 31 31 H 0.96699 * 114.00331 * 179.97438 * 21 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0030 12 8 0.7910 -5.5023 0.0030 13 7 2.8440 -6.3431 0.0037 14 6 2.3302 -7.7151 0.0051 15 1 1.4200 -7.7773 0.6015 16 6 2.0579 -8.1872 -1.4393 17 7 2.4522 -9.6196 -1.4456 18 6 3.6806 -9.6637 -0.6114 19 6 3.3976 -8.6864 0.5497 20 1 3.0119 -9.2270 1.4140 21 8 4.5855 -7.9732 0.8994 22 1 -0.4849 0.8401 -0.0004 23 1 3.1237 -3.7310 0.8925 24 1 3.1250 -3.7318 -0.8875 25 1 3.8007 -6.1836 0.0077 26 1 1.0001 -8.0830 -1.6803 27 1 2.6670 -7.6222 -2.1451 28 1 1.7251 -10.1963 -1.0495 29 1 3.8444 -10.6711 -0.2290 30 1 4.5439 -9.3318 -1.1881 31 1 5.2922 -8.5333 1.2486 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701023117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:55:46 Heat of formation + Delta-G solvation = -78.180012 kcal Electronic energy + Delta-G solvation = -15579.142767 eV Core-core repulsion = 12793.850521 eV Total energy + Delta-G solvation = -2785.292246 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.06997 -38.28709 -35.79861 -33.72445 -32.40325 -29.89541 -28.37842 -27.36329 -25.43533 -22.51521 -21.01443 -20.31426 -18.03459 -17.67310 -16.85666 -16.03758 -15.82455 -15.22333 -14.86000 -14.78022 -14.14065 -13.99498 -13.46611 -12.86366 -12.75025 -12.46538 -12.32504 -11.88152 -11.71588 -11.20108 -11.01754 -11.01621 -10.74192 -10.58690 -9.79702 -9.43946 -9.28580 -9.03408 -8.59583 -8.21206 -6.47092 -6.19090 -3.89447 2.99044 3.11478 3.25610 3.27975 3.31171 3.55356 3.93940 4.02081 4.23249 4.33259 4.61652 4.66800 4.98144 5.15885 5.16276 5.18888 5.30803 5.52092 5.64286 5.79087 5.92451 5.95667 6.18983 6.21707 6.64638 6.95531 7.25800 7.62004 7.84303 8.37787 8.66624 9.26130 10.88357 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.053816 B = 0.004473 C = 0.004271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.166389 B = 6258.712290 C = 6554.246506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.523 6.523 13 N -0.716 5.716 14 C 0.121 3.879 15 H 0.097 0.903 16 C 0.028 3.972 17 N -0.662 5.662 18 C 0.009 3.991 19 C 0.062 3.938 20 H 0.069 0.931 21 O -0.556 6.556 22 H 0.269 0.731 23 H 0.089 0.911 24 H 0.090 0.910 25 H 0.408 0.592 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.339 0.661 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.396 -18.669 0.743 20.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.302 4.302 11 C 0.318 3.682 12 O -0.397 6.397 13 N -0.372 5.372 14 C 0.012 3.988 15 H 0.115 0.885 16 C -0.103 4.103 17 N -0.289 5.289 18 C -0.122 4.122 19 C 0.001 3.999 20 H 0.087 0.913 21 O -0.361 6.361 22 H 0.078 0.922 23 H 0.108 0.892 24 H 0.108 0.892 25 H 0.245 0.755 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.155 0.845 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 7.203 -18.419 -0.152 19.778 hybrid contribution 2.407 0.951 1.206 2.855 sum 9.610 -17.467 1.054 19.964 Atomic orbital electron populations 1.70014 1.05955 1.27526 1.46882 1.24984 0.95022 0.99000 0.94535 0.86222 0.79227 0.81227 0.78804 1.19934 1.20823 1.19949 1.22839 0.94906 0.91691 1.58964 0.90974 1.85355 1.05006 0.96287 1.96727 1.23510 1.06492 0.95239 1.04977 1.20370 0.86509 0.86403 0.74914 1.90685 1.15401 1.85586 1.48062 1.45721 1.10680 1.03876 1.76932 1.22307 0.96278 0.82493 0.97690 0.88510 1.23564 1.02566 0.88358 0.95771 1.63261 1.06828 1.07710 1.51101 1.23809 0.95865 0.99224 0.93292 1.23507 0.86625 0.92830 0.96965 0.91296 1.86378 1.25168 1.38351 1.86226 0.92158 0.89225 0.89211 0.75511 0.89479 0.89359 0.84514 0.90340 0.89108 0.76911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.45 13.22 55.49 0.73 -25.72 16 2 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.63 29.55 -169.99 -5.02 16.61 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.54 -15.51 9.50 30.94 0.29 -15.21 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.18 6.16 36.00 0.22 -2.96 16 11 C 0.53 10.31 7.84 -10.99 -0.09 10.22 16 12 O -0.52 -11.98 15.56 5.55 0.09 -11.89 16 13 N -0.72 -10.46 4.91 -52.47 -0.26 -10.72 16 14 C 0.12 1.47 3.36 -66.55 -0.22 1.25 16 15 H 0.10 1.32 7.64 -51.93 -0.40 0.92 16 16 C 0.03 0.33 7.18 -2.18 -0.02 0.31 16 17 N -0.66 -6.06 7.62 -109.66 -0.84 -6.89 16 18 C 0.01 0.06 7.21 -2.18 -0.02 0.05 16 19 C 0.06 0.53 4.42 -25.35 -0.11 0.42 16 20 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 21 O -0.56 -4.67 11.49 -35.23 -0.40 -5.08 16 22 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.09 1.76 8.14 -51.91 -0.42 1.34 16 24 H 0.09 1.75 8.14 -51.92 -0.42 1.33 16 25 H 0.41 5.37 7.17 -40.82 -0.29 5.08 16 26 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.09 1.13 8.06 -51.93 -0.42 0.71 16 28 H 0.34 2.54 8.92 -39.29 -0.35 2.19 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.73 8.08 -51.93 -0.42 0.31 16 31 H 0.38 1.46 9.12 45.56 0.42 1.88 16 LS Contribution 281.22 15.07 4.24 4.24 Total: -1.00 -35.00 281.22 -6.83 -41.82 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -3.12 Total: 5.40 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -0.03 Total: -3.89 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.36 Total: -43.33 kcal Atomic # 8 Polarization: -16.65 SS G_CDS: -0.32 Total: -16.97 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -35.00 -6.83 -41.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701023117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.355 kcal (2) G-P(sol) polarization free energy of solvation -34.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds