Wall clock time and date at job start Mon Mar 30 2020 03:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48500 * 109.47411 * 270.00815 * 3 2 1 5 5 H 1.48504 * 109.47193 * 30.00896 * 3 2 1 6 6 H 1.48504 * 109.46864 * 150.00295 * 3 2 1 7 7 C 1.37884 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99708 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99650 * 179.97438 * 7 2 1 10 10 O 1.42102 * 106.40339 * 66.46080 * 9 7 2 11 11 O 1.42092 * 106.40481 * 293.53714 * 9 7 2 12 12 N 1.65598 * 107.21502 * 179.97438 * 9 7 2 13 13 C 1.46499 * 120.00162 * 65.00056 * 12 9 7 14 14 C 1.53002 * 109.47507 * 164.99612 * 13 12 9 15 15 C 1.57993 * 120.01561 * 83.94582 * 14 13 12 16 16 C 1.55989 * 80.80576 * 161.23201 * 15 14 13 17 17 C 1.54875 * 119.96717 * 182.30421 * 14 13 12 18 18 C 1.56741 * 106.43031 * 59.12831 * 16 15 14 19 19 N 1.49608 * 99.23584 * 317.77209 * 18 16 15 20 20 H 0.97001 * 119.99929 * 359.97438 * 1 2 3 21 21 H 0.97004 * 120.00233 * 244.99832 * 12 9 7 22 22 H 1.08999 * 109.46842 * 45.00160 * 13 12 9 23 23 H 1.08999 * 109.47521 * 285.00009 * 13 12 9 24 24 H 1.09003 * 114.91543 * 48.37620 * 15 14 13 25 25 H 1.08994 * 114.70371 * 274.08592 * 15 14 13 26 26 H 1.09002 * 120.17129 * 197.35444 * 16 15 14 27 27 H 1.09002 * 113.73447 * 85.34763 * 17 14 13 28 28 H 1.09004 * 115.15210 * 311.94456 * 17 14 13 29 29 H 1.08999 * 111.44689 * 75.27843 * 18 16 15 30 30 H 1.09007 * 111.44288 * 200.26992 * 18 16 15 31 31 H 1.00900 * 110.99810 * 117.89397 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1683 -0.6500 1.2485 11 8 4.1673 -0.6495 -1.2509 12 7 4.2566 -2.7759 -0.0011 13 6 3.9608 -3.6346 -1.1506 14 6 4.8197 -4.8987 -1.0774 15 6 4.3469 -6.1258 -0.2016 16 6 5.3779 -6.8554 -1.1170 17 6 4.7394 -5.9550 -2.2072 18 6 6.7569 -6.1481 -0.8831 19 7 6.2966 -4.7247 -0.8646 20 1 -0.4850 0.8401 0.0004 21 1 4.7396 -3.1340 0.7602 22 1 4.1834 -3.0971 -2.0723 23 1 2.9064 -3.9104 -1.1364 24 1 3.3112 -6.4282 -0.3561 25 1 4.6327 -6.0726 0.8488 26 1 5.3600 -7.9417 -1.2049 27 1 5.3912 -5.7416 -3.0544 28 1 3.7301 -6.2461 -2.4984 29 1 7.1963 -6.4372 0.0715 30 1 7.4450 -6.3337 -1.7080 31 1 6.4852 -4.2953 0.0288 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701854615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:35 Heat of formation + Delta-G solvation = -19.748753 kcal Electronic energy + Delta-G solvation = -16431.335988 eV Core-core repulsion = 13648.577511 eV Total energy + Delta-G solvation = -2782.758476 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.98972 -35.59917 -34.39658 -34.32883 -33.00461 -31.24446 -28.14996 -26.39010 -25.40006 -24.48657 -20.23009 -19.46450 -19.02258 -17.48633 -16.88511 -16.17773 -15.38959 -14.92279 -14.86582 -14.35036 -13.83064 -13.44703 -13.26339 -12.86252 -12.70581 -12.07821 -11.85341 -11.73988 -11.51742 -11.34196 -11.03674 -10.83121 -10.57351 -10.45647 -10.37724 -10.20796 -9.77595 -9.21363 -9.18971 -8.67049 -8.52321 -6.78800 -5.32351 2.11411 3.09358 3.20372 3.29613 3.90444 3.97765 4.16041 4.27718 4.34658 4.60645 4.62921 4.72245 5.08495 5.29092 5.38529 5.56396 5.64460 5.69029 5.74370 5.82798 5.84795 5.97496 6.05103 6.14110 6.26352 6.48167 6.62670 7.21952 7.49285 7.74039 8.21817 8.72598 10.33529 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.047109 B = 0.006816 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.219484 B = 4106.944259 C = 4356.894299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.153 3.847 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.256 1.256 6 H -0.220 1.220 7 C -1.016 5.016 8 H 0.121 0.879 9 S 2.679 3.321 10 O -1.010 7.010 11 O -1.009 7.009 12 N -1.121 6.121 13 C 0.166 3.834 14 C 0.052 3.948 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.128 4.128 18 C 0.039 3.961 19 N -0.633 5.633 20 H 0.280 0.720 21 H 0.401 0.599 22 H 0.086 0.914 23 H 0.073 0.927 24 H 0.099 0.901 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.075 0.925 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.101 -12.497 -1.517 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.067 4.067 3 Si 0.623 3.377 4 H -0.170 1.170 5 H -0.180 1.180 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.139 0.861 9 S 2.780 3.220 10 O -1.000 7.000 11 O -0.999 6.999 12 N -0.876 5.876 13 C 0.039 3.961 14 C -0.041 4.041 15 C -0.199 4.199 16 C -0.167 4.167 17 C -0.166 4.166 18 C -0.090 4.090 19 N -0.260 5.260 20 H 0.091 0.909 21 H 0.232 0.768 22 H 0.104 0.896 23 H 0.091 0.909 24 H 0.118 0.882 25 H 0.083 0.917 26 H 0.122 0.878 27 H 0.094 0.906 28 H 0.111 0.889 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.667 -11.334 -2.407 14.470 hybrid contribution -0.635 -0.226 1.257 1.426 sum 8.033 -11.560 -1.151 14.124 Atomic orbital electron populations 1.69992 1.06607 1.29020 1.39758 1.24434 0.94787 0.98855 0.88584 0.87849 0.83575 0.84474 0.81850 1.16985 1.17985 1.14192 1.30489 1.15798 1.02105 1.66667 0.86145 1.01255 0.77165 0.70339 0.73218 1.93471 1.85506 1.75897 1.45158 1.93408 1.84975 1.75986 1.45547 1.55369 1.74272 1.31479 1.26526 1.20575 0.97215 0.88633 0.89714 1.24577 0.88884 0.92725 0.97866 1.24915 0.99525 0.97388 0.98069 1.24609 0.94548 0.98755 0.98815 1.23774 1.01347 0.95295 0.96224 1.23557 0.95673 0.88425 1.01342 1.64970 1.08571 1.15058 1.37393 0.90941 0.76766 0.89576 0.90891 0.88242 0.91659 0.87767 0.90627 0.88922 0.92134 0.89436 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.85 13.96 55.43 0.77 -23.07 16 2 C 0.15 4.40 5.47 -17.82 -0.10 4.30 16 3 Si 0.80 20.74 26.54 -169.99 -4.51 16.23 16 4 H -0.25 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.22 -5.79 5.61 56.52 0.32 -5.47 16 7 C -1.02 -28.19 10.26 30.60 0.31 -27.88 16 8 H 0.12 3.34 8.06 -52.48 -0.42 2.92 16 9 S 2.68 66.49 4.24 -107.50 -0.46 66.03 16 10 O -1.01 -27.06 16.02 -57.17 -0.92 -27.97 16 11 O -1.01 -27.08 16.30 -57.17 -0.93 -28.01 16 12 N -1.12 -21.09 5.88 -10.61 -0.06 -21.15 16 13 C 0.17 2.77 6.59 -4.04 -0.03 2.74 16 14 C 0.05 0.70 1.95 -131.97 -0.26 0.44 16 15 C -0.16 -1.79 7.84 -26.01 -0.20 -1.99 16 16 C -0.15 -1.47 6.32 -91.84 -0.58 -2.05 16 17 C -0.13 -1.44 7.32 -28.23 -0.21 -1.65 16 18 C 0.04 0.40 7.70 -0.29 0.00 0.40 16 19 N -0.63 -8.27 7.74 -95.76 -0.74 -9.01 16 20 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.40 6.49 8.04 -34.47 -0.28 6.22 16 22 H 0.09 1.54 7.75 -51.93 -0.40 1.13 16 23 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 24 H 0.10 1.04 7.94 -51.93 -0.41 0.63 16 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 28 H 0.09 0.93 7.94 -51.93 -0.41 0.52 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.34 4.23 8.25 -39.29 -0.32 3.90 16 LS Contribution 269.04 15.07 4.05 4.05 Total: -1.00 -32.88 269.04 -7.86 -40.73 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: -4.00 Total: 7.85 kcal Atomic # 6 Polarization: -24.61 SS G_CDS: -1.06 Total: -25.67 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.03 Total: -53.24 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -1.85 Total: -55.99 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.51 Total: 16.23 kcal Atomic # 16 Polarization: 66.49 SS G_CDS: -0.46 Total: 66.03 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -32.88 -7.86 -40.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701854615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.984 kcal (2) G-P(sol) polarization free energy of solvation -32.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds