Wall clock time and date at job start Mon Mar 30 2020 03:45:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48500 * 109.47411 * 270.00815 * 3 2 1 5 5 H 1.48504 * 109.47193 * 30.00896 * 3 2 1 6 6 H 1.48504 * 109.46864 * 150.00295 * 3 2 1 7 7 C 1.37884 * 119.99721 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99708 * 359.97438 * 7 2 1 9 9 S 1.76195 * 119.99650 * 179.97438 * 7 2 1 10 10 O 1.42102 * 106.40339 * 66.46080 * 9 7 2 11 11 O 1.42092 * 106.40481 * 293.53714 * 9 7 2 12 12 N 1.65598 * 107.21502 * 179.97438 * 9 7 2 13 13 C 1.46499 * 120.00162 * 65.00056 * 12 9 7 14 14 C 1.53002 * 109.47507 * 164.99612 * 13 12 9 15 15 C 1.57993 * 120.01561 * 83.94582 * 14 13 12 16 16 C 1.55989 * 80.80576 * 161.23201 * 15 14 13 17 17 C 1.54875 * 119.96717 * 182.30421 * 14 13 12 18 18 C 1.56741 * 106.43031 * 59.12831 * 16 15 14 19 19 N 1.49608 * 99.23584 * 317.77209 * 18 16 15 20 20 H 0.97001 * 119.99929 * 359.97438 * 1 2 3 21 21 H 0.97004 * 120.00233 * 244.99832 * 12 9 7 22 22 H 1.08999 * 109.46842 * 45.00160 * 13 12 9 23 23 H 1.08999 * 109.47521 * 285.00009 * 13 12 9 24 24 H 1.09003 * 114.91543 * 48.37620 * 15 14 13 25 25 H 1.08994 * 114.70371 * 274.08592 * 15 14 13 26 26 H 1.09002 * 120.17129 * 197.35444 * 16 15 14 27 27 H 1.09002 * 113.73447 * 85.34763 * 17 14 13 28 28 H 1.09004 * 115.15210 * 311.94456 * 17 14 13 29 29 H 1.08999 * 111.44689 * 75.27843 * 18 16 15 30 30 H 1.09007 * 111.44288 * 200.26992 * 18 16 15 31 31 H 1.00900 * 110.99810 * 117.89397 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 16 3.7665 -1.1941 -0.0012 10 8 4.1683 -0.6500 1.2485 11 8 4.1673 -0.6495 -1.2509 12 7 4.2566 -2.7759 -0.0011 13 6 3.9608 -3.6346 -1.1506 14 6 4.8197 -4.8987 -1.0774 15 6 4.3469 -6.1258 -0.2016 16 6 5.3779 -6.8554 -1.1170 17 6 4.7394 -5.9550 -2.2072 18 6 6.7569 -6.1481 -0.8831 19 7 6.2966 -4.7247 -0.8646 20 1 -0.4850 0.8401 0.0004 21 1 4.7396 -3.1340 0.7602 22 1 4.1834 -3.0971 -2.0723 23 1 2.9064 -3.9104 -1.1364 24 1 3.3112 -6.4282 -0.3561 25 1 4.6327 -6.0726 0.8488 26 1 5.3600 -7.9417 -1.2049 27 1 5.3912 -5.7416 -3.0544 28 1 3.7301 -6.2461 -2.4984 29 1 7.1963 -6.4372 0.0715 30 1 7.4450 -6.3337 -1.7080 31 1 6.4852 -4.2953 0.0288 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701854615.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:35 Heat of formation + Delta-G solvation = -48.052706 kcal Electronic energy + Delta-G solvation = -16432.563339 eV Core-core repulsion = 13648.577511 eV Total energy + Delta-G solvation = -2783.985828 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.89597 -37.67578 -36.47697 -35.85365 -35.16970 -32.15252 -29.29257 -28.54649 -26.29090 -25.61797 -21.15956 -21.10791 -20.27012 -19.46213 -18.67825 -17.79099 -16.88683 -16.36664 -16.20879 -15.68167 -15.36287 -15.08192 -15.06500 -14.63544 -13.70358 -13.64925 -13.41806 -13.13097 -12.77972 -12.76336 -12.67750 -12.55711 -12.40893 -11.93575 -11.83891 -11.37628 -11.32113 -11.19961 -11.06777 -10.24683 -9.56525 -8.96113 -7.51528 0.16226 1.05620 1.15170 1.22579 1.89934 2.42378 2.54665 3.02593 3.28339 3.36397 3.46735 3.61153 3.75099 4.12827 4.27522 4.46897 4.56974 4.64872 4.76917 4.86810 4.91176 4.95704 4.96671 5.06818 5.15415 5.25933 5.39388 5.57775 6.01886 6.22482 6.33993 6.54702 8.21355 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.047109 B = 0.006816 C = 0.006425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.219484 B = 4106.944259 C = 4356.894299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.109 3.891 3 Si 0.824 3.176 4 H -0.240 1.240 5 H -0.220 1.220 6 H -0.230 1.230 7 C -1.036 5.036 8 H 0.109 0.891 9 S 2.702 3.298 10 O -1.030 7.030 11 O -1.030 7.030 12 N -1.104 6.104 13 C 0.158 3.842 14 C 0.035 3.965 15 C -0.156 4.156 16 C -0.129 4.129 17 C -0.127 4.127 18 C 0.038 3.962 19 N -0.653 5.653 20 H 0.291 0.709 21 H 0.416 0.584 22 H 0.069 0.931 23 H 0.077 0.923 24 H 0.107 0.893 25 H 0.067 0.933 26 H 0.130 0.870 27 H 0.069 0.931 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.927 -13.750 -1.407 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.108 4.108 3 Si 0.641 3.359 4 H -0.163 1.163 5 H -0.142 1.142 6 H -0.152 1.152 7 C -1.169 5.169 8 H 0.127 0.873 9 S 2.802 3.198 10 O -1.020 7.020 11 O -1.020 7.020 12 N -0.864 5.864 13 C 0.031 3.969 14 C -0.058 4.058 15 C -0.195 4.195 16 C -0.148 4.148 17 C -0.166 4.166 18 C -0.090 4.090 19 N -0.281 5.281 20 H 0.101 0.899 21 H 0.250 0.750 22 H 0.087 0.913 23 H 0.095 0.905 24 H 0.125 0.875 25 H 0.085 0.915 26 H 0.148 0.852 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 9.469 -12.584 -2.287 15.914 hybrid contribution -0.878 0.073 1.199 1.488 sum 8.591 -12.511 -1.088 15.215 Atomic orbital electron populations 1.70010 1.07400 1.30441 1.40508 1.25147 0.95619 1.01406 0.88634 0.87505 0.82885 0.82958 0.82542 1.16341 1.14221 1.15209 1.30977 1.17995 1.01721 1.66213 0.87292 1.00377 0.75668 0.71565 0.72229 1.93433 1.85265 1.77475 1.45850 1.93377 1.84728 1.77492 1.46411 1.54832 1.73757 1.29909 1.27944 1.20750 0.98500 0.89690 0.87928 1.24573 0.88925 0.91713 1.00554 1.24935 1.00466 0.95974 0.98110 1.24588 0.93538 0.99821 0.96826 1.23845 1.02205 0.94714 0.95804 1.23679 0.96096 0.86728 1.02540 1.64967 1.08334 1.17189 1.37560 0.89857 0.74984 0.91265 0.90527 0.87483 0.91470 0.85170 0.91274 0.87741 0.90505 0.88812 0.85027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.42 13.96 21.45 0.30 -49.12 16 2 C 0.11 6.26 5.47 84.66 0.46 6.72 16 3 Si 0.82 41.43 26.54 68.60 1.82 43.25 16 4 H -0.24 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.22 -9.74 7.11 99.48 0.71 -9.04 16 6 H -0.23 -11.88 5.61 99.48 0.56 -11.32 16 7 C -1.04 -58.04 10.26 67.74 0.69 -57.34 16 8 H 0.11 6.16 8.06 -2.91 -0.02 6.14 16 9 S 2.70 133.94 4.24 -56.49 -0.24 133.71 16 10 O -1.03 -54.82 16.02 -128.00 -2.05 -56.87 16 11 O -1.03 -55.31 16.30 -128.00 -2.09 -57.40 16 12 N -1.10 -41.06 5.88 -187.49 -1.10 -42.16 16 13 C 0.16 5.21 6.59 86.38 0.57 5.78 16 14 C 0.04 0.89 1.95 1.42 0.00 0.89 16 15 C -0.16 -3.08 7.84 31.06 0.24 -2.83 16 16 C -0.13 -2.12 6.32 -11.59 -0.07 -2.19 16 17 C -0.13 -2.59 7.32 29.62 0.22 -2.37 16 18 C 0.04 0.68 7.70 87.08 0.67 1.35 16 19 N -0.65 -16.04 7.74 -456.87 -3.54 -19.57 16 20 H 0.29 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.42 13.08 8.04 -96.74 -0.78 12.30 16 22 H 0.07 2.50 7.75 -2.39 -0.02 2.48 16 23 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 24 H 0.11 1.96 7.94 -2.39 -0.02 1.94 16 25 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 26 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.07 1.50 8.10 -2.39 -0.02 1.48 16 28 H 0.10 1.85 7.94 -2.39 -0.02 1.84 16 29 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 31 H 0.33 7.96 8.25 -89.69 -0.74 7.22 16 Total: -1.00 -69.25 269.04 -4.62 -73.87 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -0.51 Total: 24.28 kcal Atomic # 6 Polarization: -52.78 SS G_CDS: 2.79 Total: -49.99 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -4.34 Total: -110.85 kcal Atomic # 8 Polarization: -110.13 SS G_CDS: -4.14 Total: -114.27 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.82 Total: 43.25 kcal Atomic # 16 Polarization: 133.94 SS G_CDS: -0.24 Total: 133.71 kcal Total: -69.25 -4.62 -73.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701854615.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.818 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds