Wall clock time and date at job start Mon Mar 30 2020 03:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35883 * 127.02063 * 2 1 4 4 N 1.40422 * 126.78877 * 0.03726 * 3 2 1 5 5 S 1.65597 * 119.99787 * 180.02562 * 4 3 2 6 6 O 1.42103 * 106.40340 * 178.53547 * 5 4 3 7 7 O 1.42100 * 106.40596 * 311.45556 * 5 4 3 8 8 C 1.76199 * 107.21918 * 64.99621 * 5 4 3 9 9 H 1.07999 * 120.00085 * 359.97438 * 8 5 4 10 10 C 1.37879 * 120.00271 * 179.97438 * 8 5 4 11 11 N 1.31520 * 119.99636 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00420 * 180.02562 * 10 8 5 13 13 H 1.48496 * 109.46837 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47381 * 119.99874 * 12 10 8 15 15 H 1.48507 * 109.46800 * 240.00078 * 12 10 8 16 16 N 1.34019 * 106.41871 * 179.97438 * 3 2 1 17 17 N 1.28585 * 109.07398 * 359.73591 * 16 3 2 18 18 N 1.28700 * 110.38228 * 0.44448 * 17 16 3 19 19 C 1.46506 * 125.92035 * 179.82258 * 18 17 16 20 20 H 1.08997 * 109.47536 * 270.02758 * 1 2 3 21 21 H 1.08999 * 109.46896 * 30.02402 * 1 2 3 22 22 H 1.08995 * 109.47379 * 150.02400 * 1 2 3 23 23 H 0.97001 * 120.00236 * 359.97438 * 4 3 2 24 24 H 0.96997 * 119.99828 * 180.02562 * 11 10 8 25 25 H 1.09001 * 109.47060 * 269.69593 * 19 18 17 26 26 H 1.09004 * 109.47073 * 29.69082 * 19 18 17 27 27 H 1.09000 * 109.47212 * 149.69165 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.0849 0.0000 4 7 1.9336 2.4334 0.0007 5 16 3.0800 3.6284 0.0000 6 8 2.3744 4.8614 -0.0339 7 8 4.0101 3.2930 1.0206 8 6 3.9530 3.5128 -1.5262 9 1 3.6866 2.7514 -2.2443 10 6 4.9763 4.3942 -1.8036 11 7 5.3011 5.3210 -0.9288 12 14 5.9014 4.2720 -3.4219 13 1 5.3474 3.1529 -4.2254 14 1 5.7524 5.5435 -4.1744 15 1 7.3402 4.0222 -3.1519 16 7 3.5796 0.6133 0.0006 17 7 3.5453 -0.6720 0.0065 18 7 2.3274 -1.0880 0.0006 19 6 1.8975 -2.4885 0.0008 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5134 23 1 0.9916 2.6650 0.0009 24 1 6.0207 5.9414 -1.1242 25 1 1.7913 -2.8362 -1.0268 26 1 2.6415 -3.0969 0.5151 27 1 0.9399 -2.5746 0.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000702000589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:58 Heat of formation + Delta-G solvation = 10.565726 kcal Electronic energy + Delta-G solvation = -16187.509378 eV Core-core repulsion = 13302.525092 eV Total energy + Delta-G solvation = -2884.984285 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.81966 -35.47825 -35.06047 -34.08140 -33.93060 -32.97123 -31.07526 -27.67070 -26.79427 -26.02183 -21.97371 -20.99037 -18.84251 -17.83061 -16.91723 -16.46705 -16.29830 -15.66266 -14.75917 -14.01570 -13.80601 -13.57549 -13.45069 -13.14999 -12.98847 -12.53223 -11.97916 -11.44968 -11.31816 -11.16967 -11.12595 -10.80949 -10.49351 -10.24309 -10.18821 -10.05409 -9.45258 -9.14470 -8.73863 -7.86373 -6.60211 -5.18500 1.82401 2.14094 2.59849 3.07384 3.14968 3.22287 3.30972 4.07791 4.28126 4.56298 4.73892 4.77199 4.91436 4.93382 5.16236 5.44101 5.52824 5.58638 5.76662 5.90992 6.01480 6.54372 6.79739 6.85916 7.43028 7.66083 8.09093 8.91265 9.00201 10.34852 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.008620 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.260812 B = 3247.659325 C = 3733.302081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.081 4.081 3 C 0.261 3.739 4 N -1.029 6.029 5 S 2.702 3.298 6 O -0.998 6.998 7 O -0.977 6.977 8 C -0.997 4.997 9 H 0.101 0.899 10 C 0.134 3.866 11 N -0.848 5.848 12 Si 0.924 3.076 13 H -0.264 1.264 14 H -0.272 1.272 15 H -0.270 1.270 16 N -0.252 5.252 17 N -0.070 5.070 18 N -0.295 5.295 19 C 0.088 3.912 20 H 0.074 0.926 21 H 0.083 0.917 22 H 0.069 0.931 23 H 0.418 0.582 24 H 0.290 0.710 25 H 0.086 0.914 26 H 0.099 0.901 27 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.468 -13.569 -0.481 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.216 4.216 3 C 0.028 3.972 4 N -0.775 5.775 5 S 2.802 3.198 6 O -0.988 6.988 7 O -0.967 6.967 8 C -1.132 5.132 9 H 0.120 0.880 10 C -0.083 4.083 11 N -0.479 5.479 12 Si 0.748 3.252 13 H -0.187 1.187 14 H -0.198 1.198 15 H -0.195 1.195 16 N -0.123 5.123 17 N -0.049 5.049 18 N -0.094 5.094 19 C -0.054 4.054 20 H 0.093 0.907 21 H 0.102 0.898 22 H 0.088 0.912 23 H 0.251 0.749 24 H 0.100 0.900 25 H 0.105 0.895 26 H 0.118 0.882 27 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.581 -13.200 0.329 15.748 hybrid contribution -0.942 -0.063 -1.407 1.694 sum -9.523 -13.263 -1.078 16.364 Atomic orbital electron populations 1.20135 0.86105 1.03618 1.02848 1.21346 0.95477 0.86134 1.18595 1.18112 0.90135 0.85894 1.03066 1.53794 1.23065 1.13035 1.87569 1.01063 0.71869 0.70076 0.76773 1.93403 1.74759 1.41083 1.89577 1.93405 1.60592 1.82688 1.59988 1.30281 1.31578 1.25955 1.25360 0.88046 1.24711 0.93964 0.91405 0.98236 1.69901 1.27788 1.15279 1.34885 0.86083 0.79303 0.78768 0.81048 1.18747 1.19767 1.19542 1.75411 1.17872 1.00087 1.18885 1.78266 1.01212 1.06035 1.19385 1.46954 1.05060 1.07873 1.49531 1.22119 1.02284 0.76465 1.04483 0.90719 0.89833 0.91228 0.74906 0.90007 0.89505 0.88237 0.88794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 9.85 36.01 0.35 -0.30 15 2 C -0.08 -1.25 7.05 -81.47 -0.57 -1.82 15 3 C 0.26 5.45 7.66 -153.40 -1.17 4.27 15 4 N -1.03 -21.90 5.93 31.08 0.18 -21.72 15 5 S 2.70 75.25 4.81 -107.50 -0.52 74.74 15 6 O -1.00 -29.43 18.02 -57.17 -1.03 -30.46 15 7 O -0.98 -30.40 17.28 -57.17 -0.99 -31.39 15 8 C -1.00 -29.00 9.68 30.60 0.30 -28.70 15 9 H 0.10 2.80 7.81 -52.49 -0.41 2.39 15 10 C 0.13 3.91 5.46 -17.82 -0.10 3.81 15 11 N -0.85 -25.76 13.19 55.43 0.73 -25.03 15 12 Si 0.92 21.75 29.54 -169.99 -5.02 16.73 15 13 H -0.26 -6.06 7.11 56.52 0.40 -5.65 15 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 15 H -0.27 -6.17 7.11 56.52 0.40 -5.77 15 16 N -0.25 -5.99 11.57 31.07 0.36 -5.63 15 17 N -0.07 -1.37 13.15 60.35 0.79 -0.58 15 18 N -0.30 -4.36 3.77 -63.42 -0.24 -4.60 15 19 C 0.09 0.67 11.09 59.85 0.66 1.34 15 20 H 0.07 0.61 8.14 -51.93 -0.42 0.19 15 21 H 0.08 0.76 7.76 -51.93 -0.40 0.36 15 22 H 0.07 0.47 7.85 -51.93 -0.41 0.07 15 23 H 0.42 6.96 8.42 -34.47 -0.29 6.67 15 24 H 0.29 7.87 8.31 -40.82 -0.34 7.53 15 25 H 0.09 0.51 8.14 -51.93 -0.42 0.09 15 26 H 0.10 0.65 8.14 -51.93 -0.42 0.23 15 27 H 0.09 0.45 7.77 -51.93 -0.40 0.04 15 LS Contribution 261.73 15.07 3.94 3.94 Total: -1.00 -40.30 261.73 -4.63 -44.93 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -2.32 Total: 0.46 kcal Atomic # 6 Polarization: -20.87 SS G_CDS: -0.53 Total: -21.40 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: 1.83 Total: -57.55 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -2.02 Total: -61.85 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 75.25 SS G_CDS: -0.52 Total: 74.74 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -40.30 -4.63 -44.93 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702000589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.499 kcal (2) G-P(sol) polarization free energy of solvation -40.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds