Wall clock time and date at job start Mon Mar 30 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35883 * 127.02063 * 2 1 4 4 N 1.40422 * 126.78877 * 0.03726 * 3 2 1 5 5 S 1.65597 * 119.99787 * 180.02562 * 4 3 2 6 6 O 1.42103 * 106.40340 * 178.53547 * 5 4 3 7 7 O 1.42100 * 106.40596 * 311.45556 * 5 4 3 8 8 C 1.76199 * 107.21918 * 64.99621 * 5 4 3 9 9 H 1.07999 * 120.00085 * 359.97438 * 8 5 4 10 10 C 1.37879 * 120.00271 * 179.97438 * 8 5 4 11 11 N 1.31520 * 119.99636 * 0.02562 * 10 8 5 12 12 Si 1.86800 * 120.00420 * 180.02562 * 10 8 5 13 13 H 1.48496 * 109.46837 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47381 * 119.99874 * 12 10 8 15 15 H 1.48507 * 109.46800 * 240.00078 * 12 10 8 16 16 N 1.34019 * 106.41871 * 179.97438 * 3 2 1 17 17 N 1.28585 * 109.07398 * 359.73591 * 16 3 2 18 18 N 1.28700 * 110.38228 * 0.44448 * 17 16 3 19 19 C 1.46506 * 125.92035 * 179.82258 * 18 17 16 20 20 H 1.08997 * 109.47536 * 270.02758 * 1 2 3 21 21 H 1.08999 * 109.46896 * 30.02402 * 1 2 3 22 22 H 1.08995 * 109.47379 * 150.02400 * 1 2 3 23 23 H 0.97001 * 120.00236 * 359.97438 * 4 3 2 24 24 H 0.96997 * 119.99828 * 180.02562 * 11 10 8 25 25 H 1.09001 * 109.47060 * 269.69593 * 19 18 17 26 26 H 1.09004 * 109.47073 * 29.69082 * 19 18 17 27 27 H 1.09000 * 109.47212 * 149.69165 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3251 1.0849 0.0000 4 7 1.9336 2.4334 0.0007 5 16 3.0800 3.6284 0.0000 6 8 2.3744 4.8614 -0.0339 7 8 4.0101 3.2930 1.0206 8 6 3.9530 3.5128 -1.5262 9 1 3.6866 2.7514 -2.2443 10 6 4.9763 4.3942 -1.8036 11 7 5.3011 5.3210 -0.9288 12 14 5.9014 4.2720 -3.4219 13 1 5.3474 3.1529 -4.2254 14 1 5.7524 5.5435 -4.1744 15 1 7.3402 4.0222 -3.1519 16 7 3.5796 0.6133 0.0006 17 7 3.5453 -0.6720 0.0065 18 7 2.3274 -1.0880 0.0006 19 6 1.8975 -2.4885 0.0008 20 1 -0.3634 0.0005 1.0276 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8901 -0.5134 23 1 0.9916 2.6650 0.0009 24 1 6.0207 5.9414 -1.1242 25 1 1.7913 -2.8362 -1.0268 26 1 2.6415 -3.0969 0.5151 27 1 0.9399 -2.5746 0.5144 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000702000589.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:57 Heat of formation + Delta-G solvation = -24.703571 kcal Electronic energy + Delta-G solvation = -16189.038769 eV Core-core repulsion = 13302.525092 eV Total energy + Delta-G solvation = -2886.513677 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.057 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.15938 -37.51085 -36.76945 -36.21595 -35.35982 -35.12831 -32.27187 -28.73085 -28.24434 -27.85537 -23.43280 -22.27315 -20.86590 -19.59541 -18.60271 -18.27809 -17.68039 -17.23189 -16.64690 -15.98390 -15.64596 -15.01914 -14.38623 -14.02988 -13.93657 -13.81231 -13.39438 -13.19414 -13.02545 -12.92878 -12.72181 -12.68792 -12.51668 -12.44418 -12.31315 -11.58599 -11.24752 -10.95956 -10.69004 -9.33724 -8.74988 -7.45113 0.13436 0.58342 1.30173 1.33088 1.49377 1.54808 1.57070 2.19861 2.58048 2.58671 3.51174 3.61317 3.80942 3.88827 4.03681 4.41039 4.45090 4.66612 4.74566 4.79730 4.96810 5.05479 5.22747 5.31732 5.77344 5.88413 6.11972 6.78598 7.51927 8.22360 Molecular weight = 246.06amu Principal moments of inertia in cm(-1) A = 0.029835 B = 0.008620 C = 0.007498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.260812 B = 3247.659325 C = 3733.302081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.039 4.039 3 C 0.206 3.794 4 N -1.016 6.016 5 S 2.717 3.283 6 O -1.027 7.027 7 O -1.022 7.022 8 C -1.018 5.018 9 H 0.107 0.893 10 C 0.072 3.928 11 N -0.893 5.893 12 Si 0.993 3.007 13 H -0.256 1.256 14 H -0.250 1.250 15 H -0.260 1.260 16 N -0.323 5.323 17 N -0.100 5.100 18 N -0.278 5.278 19 C 0.069 3.931 20 H 0.099 0.901 21 H 0.090 0.910 22 H 0.110 0.890 23 H 0.436 0.564 24 H 0.300 0.700 25 H 0.112 0.888 26 H 0.109 0.891 27 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.358 -15.854 -1.802 20.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.176 4.176 3 C -0.027 4.027 4 N -0.769 5.769 5 S 2.818 3.182 6 O -1.017 7.017 7 O -1.012 7.012 8 C -1.152 5.152 9 H 0.125 0.875 10 C -0.141 4.141 11 N -0.525 5.525 12 Si 0.811 3.189 13 H -0.179 1.179 14 H -0.174 1.174 15 H -0.185 1.185 16 N -0.192 5.192 17 N -0.079 5.079 18 N -0.076 5.076 19 C -0.069 4.069 20 H 0.117 0.883 21 H 0.109 0.891 22 H 0.129 0.871 23 H 0.274 0.726 24 H 0.110 0.890 25 H 0.131 0.869 26 H 0.128 0.872 27 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.484 -15.533 -0.976 18.765 hybrid contribution -0.528 0.430 -0.939 1.160 sum -11.012 -15.102 -1.915 18.789 Atomic orbital electron populations 1.20514 0.81415 1.06066 1.05150 1.22147 0.97642 0.84427 1.13410 1.18498 0.90848 0.86292 1.07098 1.52786 1.22928 1.12913 1.88267 1.00175 0.71832 0.70098 0.76082 1.93348 1.75216 1.43365 1.89743 1.93341 1.62812 1.83610 1.61400 1.30585 1.32456 1.26280 1.25915 0.87496 1.25962 0.94862 0.90696 1.02544 1.69974 1.28903 1.16378 1.37241 0.85082 0.77967 0.79905 0.75979 1.17921 1.17409 1.18470 1.75279 1.20473 1.02119 1.21300 1.78125 1.03534 1.04729 1.21536 1.47605 1.03711 1.10188 1.46096 1.22822 1.04452 0.72643 1.07001 0.88265 0.89124 0.87109 0.72570 0.89015 0.86930 0.87204 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.05 9.85 71.24 0.70 -0.35 15 2 C -0.04 -1.11 7.05 41.32 0.29 -0.81 15 3 C 0.21 8.58 7.66 131.32 1.01 9.59 15 4 N -1.02 -43.78 5.93 -55.59 -0.33 -44.11 15 5 S 2.72 156.64 4.81 -56.49 -0.27 156.37 15 6 O -1.03 -62.51 18.02 -128.00 -2.31 -64.82 15 7 O -1.02 -66.69 17.28 -128.00 -2.21 -68.90 15 8 C -1.02 -60.67 9.68 67.73 0.66 -60.01 15 9 H 0.11 6.03 7.81 -2.91 -0.02 6.01 15 10 C 0.07 4.25 5.46 84.65 0.46 4.72 15 11 N -0.89 -55.65 13.19 21.45 0.28 -55.37 15 12 Si 0.99 44.51 29.54 68.60 2.03 46.53 15 13 H -0.26 -11.00 7.11 99.48 0.71 -10.29 15 14 H -0.25 -10.24 7.11 99.48 0.71 -9.53 15 15 H -0.26 -11.14 7.11 99.48 0.71 -10.44 15 16 N -0.32 -15.73 11.57 -55.60 -0.64 -16.37 15 17 N -0.10 -3.94 13.15 37.02 0.49 -3.46 15 18 N -0.28 -7.49 3.77 -354.55 -1.34 -8.82 15 19 C 0.07 0.75 11.09 127.77 1.42 2.17 15 20 H 0.10 1.08 8.14 -2.39 -0.02 1.06 15 21 H 0.09 1.26 7.76 -2.39 -0.02 1.25 15 22 H 0.11 0.76 7.85 -2.39 -0.02 0.74 15 23 H 0.44 14.41 8.42 -96.75 -0.81 13.60 15 24 H 0.30 16.65 8.31 -92.71 -0.77 15.88 15 25 H 0.11 0.77 8.14 -2.39 -0.02 0.75 15 26 H 0.11 1.05 8.14 -2.38 -0.02 1.03 15 27 H 0.13 0.44 7.77 -2.39 -0.02 0.42 15 Total: -1.00 -93.82 261.73 0.63 -93.19 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 0.40 Total: 10.46 kcal Atomic # 6 Polarization: -49.23 SS G_CDS: 4.53 Total: -44.70 kcal Atomic # 7 Polarization: -126.59 SS G_CDS: -1.54 Total: -128.13 kcal Atomic # 8 Polarization: -129.20 SS G_CDS: -4.52 Total: -133.72 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.53 kcal Atomic # 16 Polarization: 156.64 SS G_CDS: -0.27 Total: 156.37 kcal Total: -93.82 0.63 -93.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000702000589.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.486 kcal (2) G-P(sol) polarization free energy of solvation -93.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds