Wall clock time and date at job start Mon Mar 30 2020 03:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00259 * 2 1 4 4 H 1.48494 * 109.47193 * 240.00545 * 3 2 1 5 5 H 1.48499 * 109.46491 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47059 * 120.00410 * 3 2 1 7 7 C 1.38813 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00461 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00127 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.38675 * 120.41772 * 259.99738 * 11 10 9 13 13 C 1.38630 * 118.41860 * 179.74920 * 12 11 10 14 14 C 1.38224 * 119.16347 * 0.25530 * 13 12 11 15 15 N 1.31857 * 120.76155 * 0.02562 * 14 13 12 16 16 C 1.31879 * 121.72569 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.61741 * 179.97438 * 16 15 14 18 18 F 1.39907 * 109.46834 * 5.00204 * 17 16 15 19 19 F 1.39898 * 109.47189 * 124.99793 * 17 16 15 20 20 F 1.39898 * 109.47307 * 245.00153 * 17 16 15 21 21 H 0.97001 * 120.00277 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99734 * 0.02562 * 9 7 2 23 23 H 1.09006 * 109.47496 * 60.00386 * 10 9 7 24 24 H 1.09008 * 109.47216 * 300.00073 * 10 9 7 25 25 H 1.08002 * 120.79244 * 0.03059 * 12 11 10 26 26 H 1.07998 * 120.41760 * 180.27499 * 13 12 11 27 27 H 1.07997 * 119.61788 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 -0.0012 12 6 0.7799 -5.4711 1.1763 13 6 -0.1308 -6.5153 1.1290 14 6 -0.7026 -6.8560 -0.0824 15 7 -0.3903 -6.2012 -1.1835 16 6 0.4716 -5.2030 -1.1759 17 6 0.7941 -4.4878 -2.4626 18 9 -0.0199 -4.9820 -3.4876 19 9 0.5641 -3.1169 -2.3044 20 9 2.1374 -4.7005 -2.7904 21 1 -0.4850 0.8400 0.0004 22 1 0.3555 -2.3880 -0.0005 23 1 2.6847 -3.7146 0.8895 24 1 2.6847 -3.7145 -0.8906 25 1 1.2421 -5.1825 2.1087 26 1 -0.3905 -7.0554 2.0274 27 1 -1.4132 -7.6680 -0.1276 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000704011631.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:30 Heat of formation + Delta-G solvation = -93.140190 kcal Electronic energy + Delta-G solvation = -18156.991504 eV Core-core repulsion = 14693.749844 eV Total energy + Delta-G solvation = -3463.241660 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.59283 -47.17152 -46.92290 -40.27899 -35.17427 -32.76042 -32.37591 -30.22202 -26.65946 -25.62143 -23.21661 -22.51462 -21.36497 -18.29296 -18.07948 -17.87402 -17.28844 -16.18491 -15.63453 -14.87242 -14.41126 -14.09792 -13.91597 -13.67937 -13.53397 -13.36571 -13.17867 -13.10931 -13.09503 -12.77480 -12.35104 -12.07052 -11.27352 -10.89263 -10.79149 -10.16190 -9.94022 -9.75253 -9.59073 -9.11359 -8.90167 -6.98091 -5.76758 -3.07563 0.82268 1.21574 2.94128 3.44783 3.48871 3.50043 3.57465 3.96838 4.33197 4.58434 4.73682 4.84718 4.91949 4.94687 5.16475 5.25400 5.53271 5.61010 5.93139 6.01869 6.06312 6.37577 6.53727 6.57455 7.67644 7.72233 8.38833 9.51322 10.02498 10.38705 11.45434 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.008111 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.700634 B = 3451.209819 C = 3949.697845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.008 4.008 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.174 3.826 11 C -0.076 4.076 12 C -0.065 4.065 13 C -0.147 4.147 14 C 0.090 3.910 15 N -0.448 5.448 16 C 0.046 3.954 17 C 0.516 3.484 18 F -0.175 7.175 19 F -0.135 7.135 20 F -0.177 7.177 21 H 0.256 0.744 22 H 0.387 0.613 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.147 0.853 26 H 0.142 0.858 27 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.404 -13.845 0.799 13.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.204 4.204 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.364 5.364 10 C 0.047 3.953 11 C -0.079 4.079 12 C -0.091 4.091 13 C -0.166 4.166 14 C -0.068 4.068 15 N -0.157 5.157 16 C -0.093 4.093 17 C 0.460 3.540 18 F -0.156 7.156 19 F -0.116 7.116 20 F -0.158 7.158 21 H 0.066 0.934 22 H 0.221 0.779 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.165 0.835 26 H 0.160 0.840 27 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.150 -13.912 -0.042 13.913 hybrid contribution 0.481 1.202 0.648 1.448 sum 0.631 -12.710 0.606 12.740 Atomic orbital electron populations 1.69659 1.05151 1.25870 1.56994 1.24736 0.95490 0.97643 1.02538 0.86249 0.78516 0.83394 0.77876 1.21136 1.21680 1.21241 1.19126 0.90992 0.83632 1.43608 0.91023 1.42267 1.05815 0.98787 1.89522 1.19877 0.91600 0.83553 1.00318 1.21076 0.97210 0.97134 0.92463 1.21625 0.95770 0.93558 0.98153 1.22325 0.96902 0.97689 0.99706 1.22702 0.98427 0.98333 0.87381 1.67190 1.11291 1.05265 1.31906 1.20935 0.98437 0.96780 0.93155 1.17900 0.74353 0.78717 0.83000 1.93175 1.72908 1.87786 1.61754 1.93480 1.93911 1.29087 1.95155 1.93168 1.34522 1.94856 1.93300 0.93377 0.77902 0.94248 0.94246 0.83547 0.84001 0.81900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.43 15 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 15 3 Si 0.91 22.37 29.55 -169.99 -5.02 17.35 15 4 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 15 6 H -0.29 -6.87 7.11 56.52 0.40 -6.46 15 7 C -0.24 -6.73 9.99 -15.06 -0.15 -6.88 15 8 H 0.07 1.91 7.83 -52.48 -0.41 1.50 15 9 N -0.72 -18.08 3.95 -61.08 -0.24 -18.32 15 10 C 0.17 3.50 5.53 -5.19 -0.03 3.48 15 11 C -0.08 -1.33 5.23 -104.48 -0.55 -1.87 15 12 C -0.06 -0.89 9.82 -39.27 -0.39 -1.28 15 13 C -0.15 -1.65 10.11 -39.44 -0.40 -2.04 15 14 C 0.09 1.12 11.18 -17.55 -0.20 0.93 15 15 N -0.45 -7.37 9.74 -9.48 -0.09 -7.47 15 16 C 0.05 0.83 6.26 -82.59 -0.52 0.32 15 17 C 0.52 10.00 2.83 36.01 0.10 10.10 15 18 F -0.17 -3.29 16.85 2.25 0.04 -3.25 15 19 F -0.14 -3.09 14.42 2.25 0.03 -3.05 15 20 F -0.18 -3.29 15.77 2.25 0.04 -3.25 15 21 H 0.26 7.53 8.31 -40.82 -0.34 7.20 15 22 H 0.39 10.47 7.27 -40.82 -0.30 10.17 15 23 H 0.04 0.75 8.03 -51.93 -0.42 0.33 15 24 H 0.04 0.82 6.24 -51.92 -0.32 0.50 15 25 H 0.15 1.72 8.06 -52.49 -0.42 1.30 15 26 H 0.14 1.05 8.06 -52.49 -0.42 0.62 15 27 H 0.16 1.41 8.06 -52.49 -0.42 0.98 15 LS Contribution 252.98 15.07 3.81 3.81 Total: -1.00 -31.61 252.98 -4.78 -36.40 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -1.85 Total: 2.77 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -2.22 Total: 2.44 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.39 Total: -53.21 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 0.11 Total: -9.55 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -31.61 -4.78 -36.40 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704011631.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.745 kcal (2) G-P(sol) polarization free energy of solvation -31.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds