Wall clock time and date at job start Mon Mar 30 2020 03:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 120.00259 * 2 1 4 4 H 1.48494 * 109.47193 * 240.00545 * 3 2 1 5 5 H 1.48499 * 109.46491 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47059 * 120.00410 * 3 2 1 7 7 C 1.38813 * 120.00092 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00461 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99969 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00127 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47178 * 180.02562 * 10 9 7 12 12 C 1.38675 * 120.41772 * 259.99738 * 11 10 9 13 13 C 1.38630 * 118.41860 * 179.74920 * 12 11 10 14 14 C 1.38224 * 119.16347 * 0.25530 * 13 12 11 15 15 N 1.31857 * 120.76155 * 0.02562 * 14 13 12 16 16 C 1.31879 * 121.72569 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.61741 * 179.97438 * 16 15 14 18 18 F 1.39907 * 109.46834 * 5.00204 * 17 16 15 19 19 F 1.39898 * 109.47189 * 124.99793 * 17 16 15 20 20 F 1.39898 * 109.47307 * 245.00153 * 17 16 15 21 21 H 0.97001 * 120.00277 * 359.97438 * 1 2 3 22 22 H 0.97001 * 119.99734 * 0.02562 * 9 7 2 23 23 H 1.09006 * 109.47496 * 60.00386 * 10 9 7 24 24 H 1.09008 * 109.47216 * 300.00073 * 10 9 7 25 25 H 1.08002 * 120.79244 * 0.03059 * 12 11 10 26 26 H 1.07998 * 120.41760 * 180.27499 * 13 12 11 27 27 H 1.07997 * 119.61788 * 180.02562 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6963 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 2.0580 -3.6568 -0.0005 11 6 1.0787 -4.8022 -0.0012 12 6 0.7799 -5.4711 1.1763 13 6 -0.1308 -6.5153 1.1290 14 6 -0.7026 -6.8560 -0.0824 15 7 -0.3903 -6.2012 -1.1835 16 6 0.4716 -5.2030 -1.1759 17 6 0.7941 -4.4878 -2.4626 18 9 -0.0199 -4.9820 -3.4876 19 9 0.5641 -3.1169 -2.3044 20 9 2.1374 -4.7005 -2.7904 21 1 -0.4850 0.8400 0.0004 22 1 0.3555 -2.3880 -0.0005 23 1 2.6847 -3.7146 0.8895 24 1 2.6847 -3.7145 -0.8906 25 1 1.2421 -5.1825 2.1087 26 1 -0.3905 -7.0554 2.0274 27 1 -1.4132 -7.6680 -0.1276 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000704011631.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:30 Heat of formation + Delta-G solvation = -114.107577 kcal Electronic energy + Delta-G solvation = -18157.900718 eV Core-core repulsion = 14693.749844 eV Total energy + Delta-G solvation = -3464.150874 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -51.13367 -48.67384 -48.54706 -41.41952 -36.88756 -34.33489 -33.61357 -31.99811 -28.18476 -27.08189 -24.97493 -23.84263 -22.75634 -19.67817 -19.55291 -19.42912 -19.24254 -17.39298 -16.87205 -16.58563 -15.89079 -15.65862 -15.45551 -15.23392 -15.05982 -14.95530 -14.77732 -14.73307 -14.54857 -14.02458 -13.90976 -13.54753 -13.06814 -12.75062 -12.44478 -12.10998 -11.88708 -10.99569 -10.94081 -10.70995 -10.30439 -9.01968 -7.92770 -5.22860 -0.31417 0.12869 1.48433 1.51973 1.55226 1.57629 2.44183 2.56802 2.59991 2.98415 3.39585 3.41384 3.50778 3.77395 3.92058 3.97763 4.16793 4.30437 4.46412 4.73700 4.80631 5.02220 5.19776 5.49685 5.52943 6.25820 6.62617 7.33968 8.02502 8.28507 9.30339 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.027974 B = 0.008111 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.700634 B = 3451.209819 C = 3949.697845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.070 4.070 3 Si 0.973 3.027 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.273 1.273 7 C -0.244 4.244 8 H 0.079 0.921 9 N -0.729 5.729 10 C 0.176 3.824 11 C -0.097 4.097 12 C -0.067 4.067 13 C -0.120 4.120 14 C 0.094 3.906 15 N -0.474 5.474 16 C 0.025 3.975 17 C 0.510 3.490 18 F -0.175 7.175 19 F -0.163 7.163 20 F -0.177 7.177 21 H 0.251 0.749 22 H 0.374 0.626 23 H 0.056 0.944 24 H 0.030 0.970 25 H 0.168 0.832 26 H 0.194 0.806 27 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.510 -15.630 2.439 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.262 4.262 3 Si 0.802 3.198 4 H -0.207 1.207 5 H -0.223 1.223 6 H -0.199 1.199 7 C -0.375 4.375 8 H 0.097 0.903 9 N -0.372 5.372 10 C 0.049 3.951 11 C -0.100 4.100 12 C -0.093 4.093 13 C -0.139 4.139 14 C -0.065 4.065 15 N -0.183 5.183 16 C -0.113 4.113 17 C 0.455 3.545 18 F -0.157 7.157 19 F -0.144 7.144 20 F -0.159 7.159 21 H 0.059 0.941 22 H 0.206 0.794 23 H 0.074 0.926 24 H 0.047 0.953 25 H 0.186 0.814 26 H 0.211 0.789 27 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.303 -15.729 1.596 15.813 hybrid contribution 0.430 1.559 0.153 1.624 sum 0.733 -14.170 1.748 14.297 Atomic orbital electron populations 1.69824 1.06692 1.26087 1.59171 1.25535 0.96291 1.00979 1.03424 0.85222 0.77190 0.79156 0.78222 1.20738 1.22312 1.19914 1.19549 0.91506 0.84841 1.41608 0.90348 1.42385 1.05337 1.00039 1.89396 1.19901 0.92168 0.82822 1.00215 1.20882 0.97930 0.97321 0.93906 1.21976 0.96151 0.93731 0.97440 1.22858 0.94129 0.95885 1.01055 1.23572 0.98057 0.98106 0.86737 1.67189 1.11456 1.05501 1.34148 1.20650 1.00297 0.98170 0.92185 1.18226 0.74343 0.77766 0.84196 1.93156 1.72917 1.87588 1.62001 1.93412 1.94117 1.31510 1.95383 1.93151 1.34546 1.94727 1.93443 0.94064 0.79414 0.92617 0.95275 0.81432 0.78864 0.77650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.98 13.06 21.65 0.28 -59.70 15 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 15 3 Si 0.97 46.45 29.55 68.60 2.03 48.48 15 4 H -0.28 -13.09 7.11 99.48 0.71 -12.38 15 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 15 6 H -0.27 -12.35 7.11 99.48 0.71 -11.65 15 7 C -0.24 -13.61 9.99 84.03 0.84 -12.77 15 8 H 0.08 4.16 7.83 -2.91 -0.02 4.14 15 9 N -0.73 -37.17 3.95 -347.16 -1.37 -38.54 15 10 C 0.18 7.06 5.53 85.63 0.47 7.54 15 11 C -0.10 -3.30 5.23 -19.77 -0.10 -3.41 15 12 C -0.07 -1.63 9.82 22.47 0.22 -1.41 15 13 C -0.12 -2.10 10.11 22.36 0.23 -1.88 15 14 C 0.09 1.96 11.18 84.69 0.95 2.91 15 15 N -0.47 -14.80 9.74 -183.89 -1.79 -16.59 15 16 C 0.02 0.88 6.26 42.54 0.27 1.15 15 17 C 0.51 20.35 2.83 71.24 0.20 20.55 15 18 F -0.18 -6.76 16.85 44.97 0.76 -6.00 15 19 F -0.16 -7.77 14.42 44.97 0.65 -7.13 15 20 F -0.18 -6.79 15.77 44.97 0.71 -6.08 15 21 H 0.25 15.11 8.31 -92.71 -0.77 14.34 15 22 H 0.37 20.77 7.27 -92.71 -0.67 20.10 15 23 H 0.06 2.05 8.03 -2.38 -0.02 2.03 15 24 H 0.03 1.24 6.24 -2.38 -0.01 1.22 15 25 H 0.17 3.31 8.06 -2.91 -0.02 3.28 15 26 H 0.19 1.44 8.06 -2.91 -0.02 1.42 15 27 H 0.21 2.40 8.06 -2.91 -0.02 2.38 15 Total: -1.00 -70.53 252.98 5.35 -65.18 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.55 Total: 11.27 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 3.54 Total: 9.11 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -2.88 Total: -114.84 kcal Atomic # 9 Polarization: -21.32 SS G_CDS: 2.12 Total: -19.20 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -70.53 5.35 -65.18 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000704011631.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.931 kcal (2) G-P(sol) polarization free energy of solvation -70.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds