Wall clock time and date at job start Mon Mar 30 2020 03:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 120.00249 * 2 1 4 4 H 1.48498 * 109.47208 * 270.00157 * 3 2 1 5 5 H 1.48500 * 109.46941 * 30.00024 * 3 2 1 6 6 H 1.48494 * 109.46918 * 149.99782 * 3 2 1 7 7 C 1.38813 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99628 * 359.97438 * 7 2 1 9 9 N 1.36932 * 120.00410 * 180.02562 * 7 2 1 10 10 C 1.46497 * 120.00294 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47123 * 179.97438 * 10 9 7 12 12 C 1.38675 * 120.41772 * 89.99701 * 11 10 9 13 13 C 1.38630 * 118.41860 * 179.74920 * 12 11 10 14 14 C 1.38224 * 119.16347 * 0.25530 * 13 12 11 15 15 C 1.50700 * 119.62022 * 179.97438 * 14 13 12 16 16 F 1.39902 * 109.46845 * 89.99878 * 15 14 13 17 17 F 1.39899 * 109.47218 * 209.99810 * 15 14 13 18 18 F 1.39894 * 109.47171 * 330.00252 * 15 14 13 19 19 N 1.31857 * 120.76155 * 0.02562 * 14 13 12 20 20 C 1.31879 * 121.72569 * 359.97438 * 19 14 13 21 21 H 0.97005 * 119.99922 * 359.97438 * 1 2 3 22 22 H 0.97003 * 119.99696 * 359.97438 * 9 7 2 23 23 H 1.09002 * 109.46985 * 60.00021 * 10 9 7 24 24 H 1.08994 * 109.47003 * 299.99568 * 10 9 7 25 25 H 1.08002 * 120.79244 * 0.03059 * 12 11 10 26 26 H 1.07997 * 120.41760 * 180.23193 * 13 12 11 27 27 H 1.08008 * 119.61493 * 180.02562 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3795 -1.2023 0.0000 10 6 4.1120 -2.4710 -0.0011 11 6 5.5936 -2.1956 -0.0009 12 6 6.2839 -2.0684 1.1951 13 6 7.6470 -1.8204 1.1470 14 6 8.2674 -1.7038 -0.0827 15 6 9.7486 -1.4338 -0.1470 16 9 10.4434 -2.6479 -0.1707 17 9 10.0403 -0.7070 -1.3063 18 9 10.1373 -0.6960 0.9762 19 7 7.5780 -1.8252 -1.2001 20 6 6.2805 -2.0610 -1.1923 21 1 -0.4850 0.8401 0.0004 22 1 3.8646 -0.3622 0.0004 23 1 3.8490 -3.0415 -0.8919 24 1 3.8484 -3.0435 0.8881 25 1 5.7726 -2.1647 2.1415 26 1 8.2169 -1.7193 2.0587 27 1 5.7494 -2.1546 -2.1281 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707365732.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:27 Heat of formation + Delta-G solvation = -120.345610 kcal Electronic energy + Delta-G solvation = -17139.398756 eV Core-core repulsion = 13674.977380 eV Total energy + Delta-G solvation = -3464.421375 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.067 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -51.25428 -48.78023 -48.72008 -41.52395 -37.13053 -34.49941 -33.44029 -32.63823 -28.99277 -26.38734 -24.89261 -24.17398 -22.71727 -19.93477 -19.79606 -19.63098 -19.56051 -17.57319 -16.76407 -16.62764 -16.05962 -15.76759 -15.53200 -15.36652 -15.16472 -15.02452 -14.87716 -14.85542 -14.71870 -14.23863 -14.18378 -13.73491 -13.36489 -12.89627 -12.56325 -12.15751 -11.84030 -11.07715 -11.05507 -10.80089 -10.42461 -9.36014 -8.04624 -5.39593 -0.44669 0.04760 1.36560 1.37135 1.39836 1.46493 2.30749 2.42180 2.46055 2.82658 3.27411 3.29354 3.54784 3.60612 3.80932 3.82407 3.88895 4.01207 4.46601 4.73264 4.83149 4.89530 5.21223 5.38408 5.73847 6.18161 6.49548 7.03855 7.77452 7.95214 9.16298 Molecular weight = 246.07amu Principal moments of inertia in cm(-1) A = 0.039170 B = 0.005296 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 714.667404 B = 5285.371350 C = 5541.849341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.057 4.057 3 Si 0.949 3.051 4 H -0.281 1.281 5 H -0.295 1.295 6 H -0.255 1.255 7 C -0.234 4.234 8 H 0.066 0.934 9 N -0.754 5.754 10 C 0.193 3.807 11 C -0.110 4.110 12 C -0.056 4.056 13 C -0.115 4.115 14 C 0.013 3.987 15 C 0.529 3.471 16 F -0.172 7.172 17 F -0.174 7.174 18 F -0.166 7.166 19 N -0.468 5.468 20 C 0.112 3.888 21 H 0.259 0.741 22 H 0.365 0.635 23 H 0.051 0.949 24 H 0.054 0.946 25 H 0.171 0.829 26 H 0.178 0.822 27 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.725 -4.175 2.649 21.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.249 4.249 3 Si 0.777 3.223 4 H -0.207 1.207 5 H -0.222 1.222 6 H -0.179 1.179 7 C -0.365 4.365 8 H 0.084 0.916 9 N -0.400 5.400 10 C 0.067 3.933 11 C -0.113 4.113 12 C -0.082 4.082 13 C -0.135 4.135 14 C -0.126 4.126 15 C 0.474 3.526 16 F -0.154 7.154 17 F -0.156 7.156 18 F -0.147 7.147 19 N -0.177 5.177 20 C -0.046 4.046 21 H 0.068 0.932 22 H 0.198 0.802 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.188 0.812 26 H 0.195 0.805 27 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 21.011 -4.201 1.846 21.507 hybrid contribution -0.256 1.033 0.552 1.199 sum 20.755 -3.169 2.398 21.132 Atomic orbital electron populations 1.69862 1.07044 1.26738 1.59384 1.25426 0.95975 1.00993 1.02534 0.85505 0.78610 0.80190 0.78031 1.20682 1.22206 1.17925 1.19024 0.82200 0.93755 1.41529 0.91597 1.42667 1.02512 1.03553 1.91244 1.19721 0.84419 0.88138 1.01055 1.21383 0.97554 0.97595 0.94736 1.21933 0.93203 0.93483 0.99630 1.22118 0.95808 0.97128 0.98397 1.21120 0.93442 1.05929 0.92110 1.17783 0.86573 0.74416 0.73815 1.93228 1.81186 1.44797 1.96154 1.93210 1.94406 1.78027 1.49919 1.93213 1.92117 1.77371 1.51982 1.67187 1.09584 1.10717 1.30172 1.22955 0.88091 0.94274 0.99292 0.93236 0.80219 0.93089 0.92846 0.81199 0.80490 0.80362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.00 13.97 21.65 0.30 -60.69 15 2 C -0.06 -3.25 5.50 84.86 0.47 -2.78 15 3 Si 0.95 44.13 27.74 68.60 1.90 46.03 15 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 15 5 H -0.30 -13.97 7.11 99.48 0.71 -13.27 15 6 H -0.25 -10.68 6.52 99.48 0.65 -10.03 15 7 C -0.23 -12.61 10.47 84.03 0.88 -11.73 15 8 H 0.07 3.84 8.06 -2.91 -0.02 3.82 15 9 N -0.75 -32.31 5.40 -347.19 -1.87 -34.19 15 10 C 0.19 6.26 6.41 85.63 0.55 6.80 15 11 C -0.11 -2.94 5.27 -19.77 -0.10 -3.04 15 12 C -0.06 -1.24 9.86 22.47 0.22 -1.02 15 13 C -0.11 -2.30 9.44 22.36 0.21 -2.09 15 14 C 0.01 0.31 6.29 42.55 0.27 0.58 15 15 C 0.53 12.09 3.43 71.24 0.24 12.34 15 16 F -0.17 -3.88 17.30 44.97 0.78 -3.10 15 17 F -0.17 -4.50 17.04 44.97 0.77 -3.73 15 18 F -0.17 -3.36 16.44 44.97 0.74 -2.62 15 19 N -0.47 -13.08 9.96 -183.89 -1.83 -14.91 15 20 C 0.11 3.00 10.86 84.67 0.92 3.92 15 21 H 0.26 15.39 8.31 -92.70 -0.77 14.62 15 22 H 0.36 15.32 5.52 -92.71 -0.51 14.81 15 23 H 0.05 1.63 8.10 -2.39 -0.02 1.61 15 24 H 0.05 1.67 8.10 -2.39 -0.02 1.65 15 25 H 0.17 3.03 8.06 -2.91 -0.02 3.01 15 26 H 0.18 2.39 7.60 -2.91 -0.02 2.37 15 27 H 0.18 4.31 8.06 -2.91 -0.02 4.29 15 Total: -1.00 -64.64 257.91 5.09 -59.55 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: 0.65 Total: 10.69 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 3.66 Total: 2.98 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -3.40 Total: -109.79 kcal Atomic # 9 Polarization: -11.74 SS G_CDS: 2.28 Total: -9.45 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.90 Total: 46.03 kcal Total: -64.64 5.09 -59.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707365732.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.795 kcal (2) G-P(sol) polarization free energy of solvation -64.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds