Wall clock time and date at job start Mon Mar 30 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48501 * 109.47001 * 239.99385 * 3 2 1 5 5 H 1.48497 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47116 * 120.00046 * 3 2 1 7 7 C 1.38800 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99572 * 180.02562 * 7 2 1 9 9 S 1.76193 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99991 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47044 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00194 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99643 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99642 * 174.98163 * 13 11 10 15 15 C 1.52995 * 113.00084 * 294.87161 * 14 13 11 16 16 N 1.46902 * 109.47066 * 293.53857 * 15 14 13 17 17 C 1.54039 * 113.92338 * 66.80428 * 14 13 11 18 18 O 1.44178 * 85.51582 * 91.65959 * 17 14 13 19 19 C 1.44177 * 93.34546 * 24.18988 * 18 17 14 20 20 H 0.97002 * 120.00084 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47135 * 59.99861 * 10 9 7 22 22 H 1.08999 * 109.46996 * 299.99846 * 10 9 7 23 23 H 0.97001 * 120.00065 * 354.97967 * 13 11 10 24 24 H 1.09003 * 109.47301 * 173.54128 * 15 14 13 25 25 H 1.08998 * 109.47114 * 53.54099 * 15 14 13 26 26 H 1.00900 * 110.99576 * 174.35994 * 16 15 14 27 27 H 1.00893 * 111.00057 * 298.31361 * 16 15 14 28 28 H 1.08994 * 113.86102 * 205.79994 * 17 14 13 29 29 H 1.08993 * 113.86614 * 337.51107 * 17 14 13 30 30 H 1.08995 * 113.86480 * 221.66674 * 19 18 17 31 31 H 1.08997 * 113.98083 * 89.96395 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5022 0.0021 13 7 2.8443 -6.3431 0.0018 14 6 2.3343 -7.7119 0.1134 15 6 1.6585 -7.9903 1.4575 16 7 2.6608 -7.9362 2.5301 17 6 1.5111 -8.1730 -1.1042 18 8 2.7620 -8.6728 -1.6181 19 6 3.3505 -8.7904 -0.3072 20 1 -0.4850 0.8401 -0.0004 21 1 3.1246 -3.7312 0.8905 22 1 3.1245 -3.7313 -0.8895 23 1 3.7986 -6.1855 -0.0717 24 1 1.2019 -8.9799 1.4365 25 1 0.8899 -7.2394 1.6401 26 1 2.2259 -8.0255 3.4361 27 1 3.3699 -8.6416 2.3982 28 1 0.7851 -8.9532 -0.8757 29 1 1.0903 -7.3542 -1.6876 30 1 4.3884 -8.4612 -0.2586 31 1 3.1874 -9.7585 0.1664 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000707879067.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:40 Heat of formation + Delta-G solvation = -44.591135 kcal Electronic energy + Delta-G solvation = -15801.284878 eV Core-core repulsion = 13017.449155 eV Total energy + Delta-G solvation = -2783.835723 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.13157 -38.46929 -35.01098 -33.20992 -32.40689 -29.88870 -27.98898 -26.85983 -25.45282 -24.23273 -21.19757 -19.33975 -17.89102 -16.92020 -16.69445 -16.39577 -15.52866 -15.42108 -14.79308 -14.72766 -14.56821 -14.28290 -13.60459 -13.15118 -12.88637 -12.70619 -12.51395 -11.94478 -11.25817 -11.02465 -11.01800 -10.83189 -10.74058 -10.17037 -9.80345 -9.34412 -9.04124 -8.98592 -8.68245 -8.21989 -6.47262 -6.19582 -3.89723 2.94927 3.07245 3.25428 3.27845 3.31007 3.48346 3.70496 3.83769 4.22871 4.51970 4.76817 4.89903 5.01277 5.11772 5.15654 5.26426 5.35931 5.55230 5.70655 5.78976 5.88006 5.92433 5.94331 6.19098 6.62534 6.91054 7.21988 7.61584 7.72034 8.37287 8.61885 9.25795 10.87833 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045927 B = 0.004862 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.510285 B = 5757.643213 C = 5818.517602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.541 3.459 12 O -0.518 6.518 13 N -0.704 5.704 14 C 0.123 3.877 15 C 0.050 3.950 16 N -0.842 5.842 17 C 0.036 3.964 18 O -0.376 6.376 19 C 0.037 3.963 20 H 0.269 0.731 21 H 0.091 0.909 22 H 0.088 0.912 23 H 0.402 0.598 24 H 0.037 0.963 25 H 0.094 0.906 26 H 0.345 0.655 27 H 0.334 0.666 28 H 0.088 0.912 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.217 -17.343 2.348 18.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.327 3.673 12 O -0.393 6.393 13 N -0.357 5.357 14 C 0.034 3.966 15 C -0.082 4.082 16 N -0.371 5.371 17 C -0.042 4.042 18 O -0.295 6.295 19 C -0.041 4.041 20 H 0.078 0.922 21 H 0.110 0.890 22 H 0.107 0.893 23 H 0.237 0.763 24 H 0.055 0.945 25 H 0.112 0.888 26 H 0.158 0.842 27 H 0.146 0.854 28 H 0.106 0.894 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 5.287 -16.862 1.833 17.766 hybrid contribution 2.071 0.405 0.423 2.152 sum 7.358 -16.457 2.256 18.167 Atomic orbital electron populations 1.70008 1.05954 1.27534 1.46899 1.24981 0.95014 0.98993 0.94530 0.86230 0.79238 0.81248 0.78810 1.19943 1.20825 1.19935 1.22837 0.94906 0.91707 1.58955 0.90984 1.85334 1.04911 0.96247 1.96725 1.23523 1.06601 0.95185 1.04974 1.20257 0.86430 0.86057 0.74507 1.90668 1.15321 1.85558 1.47750 1.45453 1.10211 1.03429 1.76645 1.23016 0.94600 0.84197 0.94827 1.22151 0.94954 1.00470 0.90604 1.58501 1.16471 1.57002 1.05114 1.24380 0.88017 0.98333 0.93492 1.89715 1.27117 1.87502 1.25131 1.24211 0.98852 0.97429 0.83614 0.92158 0.89048 0.89329 0.76289 0.94522 0.88751 0.84239 0.85447 0.89443 0.87751 0.88590 0.89419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.30 13.22 55.49 0.73 -25.56 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 7 C -0.54 -15.38 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.11 6.16 36.01 0.22 -2.89 16 11 C 0.54 10.03 7.38 -10.98 -0.08 9.95 16 12 O -0.52 -11.23 13.86 5.56 0.08 -11.15 16 13 N -0.70 -9.70 5.27 -53.75 -0.28 -9.99 16 14 C 0.12 1.45 0.80 -130.74 -0.10 1.34 16 15 C 0.05 0.56 6.16 -3.83 -0.02 0.54 16 16 N -0.84 -7.94 9.59 -10.37 -0.10 -8.04 16 17 C 0.04 0.45 8.09 37.61 0.30 0.76 16 18 O -0.38 -4.82 12.45 -35.23 -0.44 -5.26 16 19 C 0.04 0.34 7.95 37.61 0.30 0.64 16 20 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 21 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 22 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 23 H 0.40 4.62 8.67 -40.82 -0.35 4.27 16 24 H 0.04 0.33 8.05 -51.93 -0.42 -0.09 16 25 H 0.09 1.39 6.92 -51.93 -0.36 1.03 16 26 H 0.34 2.86 9.08 -39.29 -0.36 2.51 16 27 H 0.33 2.35 8.49 -39.30 -0.33 2.02 16 28 H 0.09 0.90 8.03 -51.93 -0.42 0.49 16 29 H 0.10 1.57 7.46 -51.93 -0.39 1.18 16 30 H 0.10 0.74 8.09 -51.93 -0.42 0.32 16 31 H 0.09 0.59 8.10 -51.93 -0.42 0.17 16 LS Contribution 282.64 15.07 4.26 4.26 Total: -1.00 -34.29 282.64 -6.03 -40.32 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -3.86 Total: 5.45 kcal Atomic # 6 Polarization: -3.54 SS G_CDS: 0.81 Total: -2.72 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.35 Total: -43.59 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.36 Total: -16.41 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -34.29 -6.03 -40.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707879067.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.273 kcal (2) G-P(sol) polarization free energy of solvation -34.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds