Wall clock time and date at job start Mon Mar 30 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86807 * 119.99685 * 2 1 4 4 H 1.48501 * 109.47001 * 239.99385 * 3 2 1 5 5 H 1.48497 * 109.47264 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47116 * 120.00046 * 3 2 1 7 7 C 1.38800 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99572 * 180.02562 * 7 2 1 9 9 S 1.76193 * 119.99746 * 0.02562 * 7 2 1 10 10 C 1.81001 * 99.99991 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47044 * 179.97438 * 10 9 7 12 12 O 1.21273 * 120.00194 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99643 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99642 * 174.98163 * 13 11 10 15 15 C 1.52995 * 113.00084 * 294.87161 * 14 13 11 16 16 N 1.46902 * 109.47066 * 293.53857 * 15 14 13 17 17 C 1.54039 * 113.92338 * 66.80428 * 14 13 11 18 18 O 1.44178 * 85.51582 * 91.65959 * 17 14 13 19 19 C 1.44177 * 93.34546 * 24.18988 * 18 17 14 20 20 H 0.97002 * 120.00084 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47135 * 59.99861 * 10 9 7 22 22 H 1.08999 * 109.46996 * 299.99846 * 10 9 7 23 23 H 0.97001 * 120.00065 * 354.97967 * 13 11 10 24 24 H 1.09003 * 109.47301 * 173.54128 * 15 14 13 25 25 H 1.08998 * 109.47114 * 53.54099 * 15 14 13 26 26 H 1.00900 * 110.99576 * 174.35994 * 16 15 14 27 27 H 1.00893 * 111.00057 * 298.31361 * 16 15 14 28 28 H 1.08994 * 113.86102 * 205.79994 * 17 14 13 29 29 H 1.08993 * 113.86614 * 337.51107 * 17 14 13 30 30 H 1.08995 * 113.86480 * 221.66674 * 19 18 17 31 31 H 1.08997 * 113.98083 * 89.96395 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6965 -1.2124 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8913 0.0005 11 6 1.9875 -5.3027 0.0012 12 8 0.7913 -5.5022 0.0021 13 7 2.8443 -6.3431 0.0018 14 6 2.3343 -7.7119 0.1134 15 6 1.6585 -7.9903 1.4575 16 7 2.6608 -7.9362 2.5301 17 6 1.5111 -8.1730 -1.1042 18 8 2.7620 -8.6728 -1.6181 19 6 3.3505 -8.7904 -0.3072 20 1 -0.4850 0.8401 -0.0004 21 1 3.1246 -3.7312 0.8905 22 1 3.1245 -3.7313 -0.8895 23 1 3.7986 -6.1855 -0.0717 24 1 1.2019 -8.9799 1.4365 25 1 0.8899 -7.2394 1.6401 26 1 2.2259 -8.0255 3.4361 27 1 3.3699 -8.6416 2.3982 28 1 0.7851 -8.9532 -0.8757 29 1 1.0903 -7.3542 -1.6876 30 1 4.3884 -8.4612 -0.2586 31 1 3.1874 -9.7585 0.1664 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000707879067.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:54:40 Heat of formation + Delta-G solvation = -74.664232 kcal Electronic energy + Delta-G solvation = -15802.588945 eV Core-core repulsion = 13017.449155 eV Total energy + Delta-G solvation = -2785.139790 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.12794 -39.84504 -35.97060 -34.58762 -34.38896 -31.22648 -29.21721 -27.69612 -27.63622 -25.10615 -22.48850 -20.48565 -19.85990 -18.06029 -17.67445 -17.59145 -16.87466 -16.61164 -16.45544 -16.25969 -15.75770 -15.34886 -15.06999 -14.63389 -14.19044 -13.91251 -13.67710 -13.31183 -13.16454 -12.86329 -12.62613 -12.27387 -11.79052 -11.72508 -11.17452 -11.12504 -10.72827 -10.28156 -10.03959 -9.56008 -8.65416 -8.34262 -6.11949 1.26298 1.44235 1.46164 1.56162 1.62269 2.16897 2.28503 2.62426 2.96599 2.99843 3.32127 3.68134 3.87326 4.04827 4.14908 4.27174 4.31274 4.42744 4.51175 4.55143 4.62219 4.83860 4.95799 5.07543 5.41780 5.50096 6.18314 6.19850 6.49166 6.63518 7.06984 7.24832 8.74750 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.045927 B = 0.004862 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.510285 B = 5757.643213 C = 5818.517602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 0.998 3.002 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.550 4.550 8 H 0.081 0.919 9 S -0.144 6.144 10 C -0.129 4.129 11 C 0.542 3.458 12 O -0.556 6.556 13 N -0.684 5.684 14 C 0.111 3.889 15 C 0.058 3.942 16 N -0.848 5.848 17 C 0.032 3.968 18 O -0.398 6.398 19 C 0.051 3.949 20 H 0.271 0.729 21 H 0.106 0.894 22 H 0.105 0.895 23 H 0.416 0.584 24 H 0.063 0.937 25 H 0.052 0.948 26 H 0.351 0.649 27 H 0.351 0.649 28 H 0.111 0.889 29 H 0.071 0.929 30 H 0.116 0.884 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.682 -18.403 2.812 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.697 4.697 8 H 0.099 0.901 9 S 0.083 5.917 10 C -0.281 4.281 11 C 0.328 3.672 12 O -0.434 6.434 13 N -0.337 5.337 14 C 0.023 3.977 15 C -0.075 4.075 16 N -0.380 5.380 17 C -0.046 4.046 18 O -0.317 6.317 19 C -0.025 4.025 20 H 0.080 0.920 21 H 0.124 0.876 22 H 0.123 0.877 23 H 0.253 0.747 24 H 0.081 0.919 25 H 0.071 0.929 26 H 0.165 0.835 27 H 0.165 0.835 28 H 0.129 0.871 29 H 0.089 0.911 30 H 0.134 0.866 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.806 -17.970 2.304 19.727 hybrid contribution 1.351 0.589 0.290 1.502 sum 9.157 -17.381 2.594 19.816 Atomic orbital electron populations 1.70171 1.07957 1.28688 1.47959 1.26110 0.95950 1.03256 0.93665 0.85016 0.77833 0.75736 0.79483 1.18724 1.20281 1.18660 1.23187 0.95345 0.92193 1.59023 0.90088 1.85475 1.10264 0.98954 1.97028 1.23360 1.03651 0.94664 1.06394 1.19926 0.86275 0.86284 0.74752 1.90660 1.16948 1.85929 1.49832 1.45219 1.10322 1.03554 1.74597 1.23306 0.96031 0.83386 0.95021 1.21966 0.94390 1.00495 0.90614 1.58425 1.16558 1.58062 1.04981 1.24378 0.88685 0.98261 0.93255 1.89697 1.27221 1.87590 1.27223 1.24475 0.98928 0.97670 0.81443 0.91965 0.87573 0.87715 0.74691 0.91868 0.92893 0.83493 0.83515 0.87127 0.91085 0.86601 0.85998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.37 13.22 21.65 0.29 -56.08 16 2 C 0.02 0.86 5.49 84.86 0.47 1.33 16 3 Si 1.00 43.94 29.55 68.60 2.03 45.96 16 4 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.55 -31.81 9.50 67.95 0.65 -31.17 16 8 H 0.08 4.36 7.80 -2.91 -0.02 4.34 16 9 S -0.14 -8.09 20.57 -56.49 -1.16 -9.25 16 10 C -0.13 -5.27 6.16 71.24 0.44 -4.83 16 11 C 0.54 20.13 7.38 87.66 0.65 20.77 16 12 O -0.56 -24.91 13.86 -3.01 -0.04 -24.95 16 13 N -0.68 -17.89 5.27 -453.39 -2.39 -20.28 16 14 C 0.11 2.40 0.80 4.31 0.00 2.40 16 15 C 0.06 1.19 6.16 86.30 0.53 1.72 16 16 N -0.85 -13.89 9.59 -186.72 -1.79 -15.68 16 17 C 0.03 0.79 8.09 72.28 0.58 1.37 16 18 O -0.40 -9.32 12.45 -148.98 -1.86 -11.17 16 19 C 0.05 0.75 7.95 72.28 0.57 1.33 16 20 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 21 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 22 H 0.10 3.90 8.14 -2.40 -0.02 3.88 16 23 H 0.42 8.53 8.67 -92.71 -0.80 7.72 16 24 H 0.06 0.97 8.05 -2.39 -0.02 0.95 16 25 H 0.05 1.57 6.92 -2.39 -0.02 1.55 16 26 H 0.35 5.13 9.08 -89.69 -0.81 4.31 16 27 H 0.35 3.64 8.49 -89.70 -0.76 2.88 16 28 H 0.11 2.12 8.03 -2.39 -0.02 2.10 16 29 H 0.07 2.20 7.46 -2.39 -0.02 2.19 16 30 H 0.12 1.26 8.09 -2.39 -0.02 1.24 16 31 H 0.12 1.02 8.10 -2.39 -0.02 1.00 16 Total: -1.00 -77.05 282.64 -2.24 -79.29 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: -1.20 Total: 19.25 kcal Atomic # 6 Polarization: -10.97 SS G_CDS: 3.89 Total: -7.08 kcal Atomic # 7 Polarization: -88.15 SS G_CDS: -3.89 Total: -92.04 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -1.90 Total: -36.13 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -77.05 -2.24 -79.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000707879067.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.626 kcal (2) G-P(sol) polarization free energy of solvation -77.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds