Wall clock time and date at job start Mon Mar 30 2020 03:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46500 * 109.46837 * 90.03047 * 7 6 5 9 9 S 1.65600 * 120.00094 * 165.00008 * 8 7 6 10 10 O 1.42106 * 106.40292 * 178.53904 * 9 8 7 11 11 O 1.42097 * 106.40249 * 311.45918 * 9 8 7 12 12 C 1.76200 * 107.21608 * 64.99842 * 9 8 7 13 13 H 1.07997 * 120.00402 * 0.02562 * 12 9 8 14 14 C 1.37883 * 120.00011 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99907 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00103 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47135 * 59.99677 * 16 14 12 18 18 H 1.48493 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46837 * 299.99706 * 16 14 12 20 20 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 21 21 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 22 22 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 23 23 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 24 24 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 25 25 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 26 26 H 0.97006 * 120.00099 * 344.99888 * 8 7 6 27 27 H 0.96992 * 120.00084 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8578 -3.0451 1.3754 9 16 1.0857 -4.4759 1.6903 10 8 1.1614 -4.6719 3.0957 11 8 -0.1422 -4.4348 0.9763 12 6 2.0453 -5.7587 0.9566 13 1 2.9538 -5.5170 0.4252 14 6 1.6361 -7.0713 1.0608 15 7 0.5299 -7.3658 1.7083 16 14 2.6537 -8.4314 0.2836 17 1 4.0150 -8.4317 0.8769 18 1 2.0036 -9.7422 0.5368 19 1 2.7517 -8.2014 -1.1801 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5141 23 1 2.0576 2.1094 0.0004 24 1 1.0275 -2.6837 -0.5163 25 1 2.7453 -3.1500 -0.5220 26 1 2.2273 -2.5227 2.1045 27 1 0.2419 -8.2891 1.7814 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000708247170.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:14 Heat of formation + Delta-G solvation = -37.001509 kcal Electronic energy + Delta-G solvation = -15839.365373 eV Core-core repulsion = 12920.025666 eV Total energy + Delta-G solvation = -2919.339707 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.91032 -36.06700 -35.19398 -33.98749 -33.59596 -33.06983 -31.81011 -28.12011 -26.23596 -26.10717 -21.61330 -21.19791 -19.07765 -17.75470 -17.55955 -17.20815 -16.15758 -15.44506 -14.86445 -14.80399 -14.01477 -13.44409 -13.37443 -13.22696 -12.87575 -12.68960 -12.11054 -11.98745 -11.28978 -11.19768 -11.09768 -10.68110 -10.61053 -10.32358 -10.23371 -9.85519 -9.35243 -9.24193 -9.09429 -8.56367 -6.70947 -5.33375 1.50496 2.03129 2.49879 3.09431 3.13631 3.19948 3.28658 4.06666 4.21423 4.56284 4.64146 4.77781 4.91704 5.17231 5.45089 5.60583 5.69054 5.75705 5.80952 5.94141 6.01127 6.25682 6.40808 6.74854 7.31470 7.80375 7.96112 8.31446 8.88210 10.23342 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037214 B = 0.006685 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.229088 B = 4187.184309 C = 4552.850478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.185 4.185 3 C -0.076 4.076 4 O 0.101 5.899 5 N -0.352 5.352 6 C 0.014 3.986 7 C 0.206 3.794 8 N -1.131 6.131 9 S 2.716 3.284 10 O -1.003 7.003 11 O -1.004 7.004 12 C -1.022 5.022 13 H 0.102 0.898 14 C 0.133 3.867 15 N -0.845 5.845 16 Si 0.921 3.079 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.264 1.264 20 H 0.076 0.924 21 H 0.070 0.930 22 H 0.079 0.921 23 H 0.214 0.786 24 H 0.097 0.903 25 H 0.079 0.921 26 H 0.404 0.596 27 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 13.591 -4.860 14.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.189 4.189 3 C -0.157 4.157 4 O 0.033 5.967 5 N -0.055 5.055 6 C -0.146 4.146 7 C 0.079 3.921 8 N -0.886 5.886 9 S 2.816 3.184 10 O -0.994 6.994 11 O -0.994 6.994 12 C -1.155 5.155 13 H 0.121 0.879 14 C -0.085 4.085 15 N -0.475 5.475 16 Si 0.745 3.255 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.188 1.188 20 H 0.095 0.905 21 H 0.089 0.911 22 H 0.098 0.902 23 H 0.231 0.769 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.234 0.766 27 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.021 12.719 -4.471 13.633 hybrid contribution 0.407 -0.451 -0.387 0.721 sum 2.428 12.268 -4.859 13.417 Atomic orbital electron populations 1.20174 0.87166 1.03425 1.03205 1.21420 0.98945 0.91512 1.07061 1.25719 0.83285 1.00999 1.05714 1.84818 1.29106 1.15642 1.67128 1.73881 1.22405 0.91109 1.18093 1.23698 0.88436 0.98847 1.03619 1.19292 1.02360 0.85396 0.85083 1.56046 1.78391 1.42610 1.11582 1.00415 0.73391 0.71304 0.73298 1.93383 1.87626 1.84948 1.33405 1.93354 1.44644 1.86509 1.74923 1.30517 1.24845 1.08178 1.51997 0.87928 1.24742 0.93657 0.99117 0.90956 1.69882 1.20184 1.22783 1.34631 0.86185 0.80358 0.78744 0.80194 1.18862 1.20112 1.18812 0.90537 0.91138 0.90163 0.76902 0.88484 0.90335 0.76597 0.89794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.37 36.01 0.37 -0.51 15 2 C -0.19 -2.34 6.32 -104.42 -0.66 -3.00 15 3 C -0.08 -0.77 12.26 29.74 0.36 -0.41 15 4 O 0.10 1.32 11.20 17.17 0.19 1.51 15 5 N -0.35 -5.59 12.07 33.42 0.40 -5.19 15 6 C 0.01 0.22 6.72 -82.10 -0.55 -0.33 15 7 C 0.21 3.67 6.73 -5.19 -0.03 3.63 15 8 N -1.13 -22.93 5.99 -11.66 -0.07 -23.00 15 9 S 2.72 71.39 5.02 -107.50 -0.54 70.85 15 10 O -1.00 -29.41 18.02 -57.17 -1.03 -30.44 15 11 O -1.00 -28.47 17.49 -57.17 -1.00 -29.47 15 12 C -1.02 -28.09 9.72 30.60 0.30 -27.79 15 13 H 0.10 2.59 7.81 -52.49 -0.41 2.18 15 14 C 0.13 3.72 5.46 -17.82 -0.10 3.62 15 15 N -0.85 -24.77 13.19 55.43 0.73 -24.04 15 16 Si 0.92 20.64 29.54 -169.99 -5.02 15.61 15 17 H -0.26 -5.77 7.11 56.52 0.40 -5.37 15 18 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 19 H -0.26 -5.68 7.11 56.52 0.40 -5.28 15 20 H 0.08 0.82 8.14 -51.93 -0.42 0.39 15 21 H 0.07 0.55 8.14 -51.93 -0.42 0.13 15 22 H 0.08 0.94 7.65 -51.93 -0.40 0.55 15 23 H 0.21 1.12 8.06 -52.48 -0.42 0.69 15 24 H 0.10 1.67 7.26 -51.93 -0.38 1.29 15 25 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 26 H 0.40 7.47 8.65 -34.47 -0.30 7.17 15 27 H 0.29 7.69 8.31 -40.82 -0.34 7.35 15 LS Contribution 263.59 15.07 3.97 3.97 Total: -1.00 -35.46 263.59 -4.98 -40.44 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -2.31 Total: 4.54 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -0.31 Total: -24.79 kcal Atomic # 7 Polarization: -53.29 SS G_CDS: 1.06 Total: -52.23 kcal Atomic # 8 Polarization: -56.56 SS G_CDS: -1.84 Total: -58.40 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 71.39 SS G_CDS: -0.54 Total: 70.85 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -35.46 -4.98 -40.44 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708247170.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.434 kcal (2) G-P(sol) polarization free energy of solvation -35.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds