Wall clock time and date at job start Mon Mar 30 2020 03:36:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35446 * 128.00505 * 2 1 4 4 O 1.34044 * 106.44743 * 180.02562 * 3 2 1 5 5 N 1.20918 * 111.56370 * 359.97438 * 4 3 2 6 6 C 1.30174 * 111.60837 * 359.97438 * 5 4 3 7 7 C 1.50702 * 126.80448 * 179.73357 * 6 5 4 8 8 N 1.46500 * 109.46837 * 90.03047 * 7 6 5 9 9 S 1.65600 * 120.00094 * 165.00008 * 8 7 6 10 10 O 1.42106 * 106.40292 * 178.53904 * 9 8 7 11 11 O 1.42097 * 106.40249 * 311.45918 * 9 8 7 12 12 C 1.76200 * 107.21608 * 64.99842 * 9 8 7 13 13 H 1.07997 * 120.00402 * 0.02562 * 12 9 8 14 14 C 1.37883 * 120.00011 * 180.02562 * 12 9 8 15 15 N 1.31516 * 119.99907 * 359.97438 * 14 12 9 16 16 Si 1.86799 * 120.00103 * 180.02562 * 14 12 9 17 17 H 1.48495 * 109.47135 * 59.99677 * 16 14 12 18 18 H 1.48493 * 109.46970 * 179.97438 * 16 14 12 19 19 H 1.48496 * 109.46837 * 299.99706 * 16 14 12 20 20 H 1.09000 * 109.46935 * 269.97368 * 1 2 3 21 21 H 1.08996 * 109.47443 * 29.97282 * 1 2 3 22 22 H 1.09001 * 109.47282 * 149.97957 * 1 2 3 23 23 H 1.08004 * 126.77907 * 0.02562 * 3 2 1 24 24 H 1.08999 * 109.47361 * 210.02423 * 7 6 5 25 25 H 1.08995 * 109.47063 * 330.03017 * 7 6 5 26 26 H 0.97006 * 120.00099 * 344.99888 * 8 7 6 27 27 H 0.96992 * 120.00084 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3410 1.0673 0.0000 4 8 3.5877 0.5747 -0.0006 5 7 3.5878 -0.6344 -0.0004 6 6 2.3776 -1.1140 0.0008 7 6 1.9827 -2.5683 -0.0042 8 7 1.8578 -3.0451 1.3754 9 16 1.0857 -4.4759 1.6903 10 8 1.1614 -4.6719 3.0957 11 8 -0.1422 -4.4348 0.9763 12 6 2.0453 -5.7587 0.9566 13 1 2.9538 -5.5170 0.4252 14 6 1.6361 -7.0713 1.0608 15 7 0.5299 -7.3658 1.7083 16 14 2.6537 -8.4314 0.2836 17 1 4.0150 -8.4317 0.8769 18 1 2.0036 -9.7422 0.5368 19 1 2.7517 -8.2014 -1.1801 20 1 -0.3633 -0.0005 1.0277 21 1 -0.3634 0.8902 -0.5134 22 1 -0.3634 -0.8898 -0.5141 23 1 2.0576 2.1094 0.0004 24 1 1.0275 -2.6837 -0.5163 25 1 2.7453 -3.1500 -0.5220 26 1 2.2273 -2.5227 2.1045 27 1 0.2419 -8.2891 1.7814 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000708247170.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:13 Heat of formation + Delta-G solvation = -66.383262 kcal Electronic energy + Delta-G solvation = -15840.639461 eV Core-core repulsion = 12920.025666 eV Total energy + Delta-G solvation = -2920.613795 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 246.051 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.98489 -37.59277 -37.18308 -36.19092 -35.23104 -34.76382 -32.98012 -29.04107 -28.28528 -27.61119 -22.67753 -22.26812 -21.09139 -19.50186 -18.75431 -18.61083 -18.05382 -17.14397 -16.73077 -16.15791 -15.75577 -15.36406 -14.57440 -14.16971 -14.08161 -13.98732 -13.85669 -13.35231 -13.08108 -13.01249 -12.59887 -12.55019 -12.47851 -12.32890 -12.10031 -11.25068 -11.11896 -11.03280 -10.36167 -10.26804 -8.77728 -7.51399 0.18361 0.63394 1.17463 1.34719 1.35720 1.49032 2.20178 2.44208 2.56246 2.95774 3.06928 3.51298 3.69637 3.97813 4.18135 4.32048 4.43449 4.58176 4.73558 4.82316 4.88815 4.95785 5.01355 5.26590 5.36900 5.86153 6.16771 6.76048 7.31444 8.18961 Molecular weight = 246.05amu Principal moments of inertia in cm(-1) A = 0.037214 B = 0.006685 C = 0.006149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.229088 B = 4187.184309 C = 4552.850478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.204 4.204 3 C -0.043 4.043 4 O 0.107 5.893 5 N -0.380 5.380 6 C -0.011 4.011 7 C 0.201 3.799 8 N -1.117 6.117 9 S 2.726 3.274 10 O -1.041 7.041 11 O -1.033 7.033 12 C -1.045 5.045 13 H 0.118 0.882 14 C 0.072 3.928 15 N -0.891 5.891 16 Si 0.990 3.010 17 H -0.254 1.254 18 H -0.262 1.262 19 H -0.249 1.249 20 H 0.073 0.927 21 H 0.106 0.894 22 H 0.061 0.939 23 H 0.270 0.730 24 H 0.097 0.903 25 H 0.078 0.922 26 H 0.412 0.588 27 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 14.908 -5.945 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.209 4.209 3 C -0.123 4.123 4 O 0.038 5.962 5 N -0.082 5.082 6 C -0.170 4.170 7 C 0.075 3.925 8 N -0.876 5.876 9 S 2.827 3.173 10 O -1.032 7.032 11 O -1.023 7.023 12 C -1.178 5.178 13 H 0.136 0.864 14 C -0.141 4.141 15 N -0.522 5.522 16 Si 0.808 3.192 17 H -0.178 1.178 18 H -0.186 1.186 19 H -0.172 1.172 20 H 0.092 0.908 21 H 0.124 0.876 22 H 0.080 0.920 23 H 0.285 0.715 24 H 0.115 0.885 25 H 0.097 0.903 26 H 0.245 0.755 27 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.944 14.040 -5.549 15.381 hybrid contribution 0.121 -0.686 -0.058 0.699 sum 3.065 13.354 -5.607 14.804 Atomic orbital electron populations 1.20235 0.86114 1.04323 1.03303 1.21680 0.99845 0.91162 1.08213 1.26635 0.81223 1.02564 1.01918 1.84778 1.30596 1.14571 1.66298 1.73875 1.22729 0.92439 1.19164 1.23515 0.89570 0.98264 1.05675 1.19351 1.02541 0.87446 0.83196 1.55437 1.77793 1.41022 1.13310 0.99775 0.73251 0.72057 0.72221 1.93321 1.88188 1.86088 1.35556 1.93307 1.46502 1.87313 1.75150 1.30880 1.25594 1.09054 1.52277 0.86356 1.25988 0.94819 1.02119 0.91204 1.69967 1.22078 1.24029 1.36128 0.85164 0.78703 0.75546 0.79801 1.17812 1.18555 1.17239 0.90824 0.87570 0.92010 0.71473 0.88492 0.90349 0.75498 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.63 10.37 71.24 0.74 -0.89 15 2 C -0.20 -4.74 6.32 -19.74 -0.12 -4.87 15 3 C -0.04 -0.70 12.26 67.17 0.82 0.12 15 4 O 0.11 2.53 11.20 71.60 0.80 3.33 15 5 N -0.38 -11.63 12.07 -49.55 -0.60 -12.23 15 6 C -0.01 -0.35 6.72 43.58 0.29 -0.06 15 7 C 0.20 7.23 6.73 85.63 0.58 7.81 15 8 N -1.12 -45.99 5.99 -190.79 -1.14 -47.13 15 9 S 2.73 146.81 5.02 -56.49 -0.28 146.53 15 10 O -1.04 -62.82 18.02 -128.00 -2.31 -65.12 15 11 O -1.03 -60.25 17.49 -128.00 -2.24 -62.49 15 12 C -1.04 -57.88 9.72 67.74 0.66 -57.22 15 13 H 0.12 5.95 7.81 -2.91 -0.02 5.93 15 14 C 0.07 4.02 5.46 84.66 0.46 4.48 15 15 N -0.89 -52.99 13.19 21.45 0.28 -52.70 15 16 Si 0.99 41.46 29.54 68.60 2.03 43.49 15 17 H -0.25 -10.16 7.11 99.48 0.71 -9.46 15 18 H -0.26 -10.22 7.11 99.48 0.71 -9.52 15 19 H -0.25 -9.75 7.11 99.48 0.71 -9.04 15 20 H 0.07 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.11 1.28 8.14 -2.39 -0.02 1.26 15 22 H 0.06 1.43 7.65 -2.39 -0.02 1.42 15 23 H 0.27 1.14 8.06 -2.91 -0.02 1.12 15 24 H 0.10 3.43 7.26 -2.39 -0.02 3.41 15 25 H 0.08 2.76 8.14 -2.39 -0.02 2.74 15 26 H 0.41 15.47 8.65 -96.74 -0.84 14.63 15 27 H 0.30 16.02 8.31 -92.71 -0.77 15.25 15 Total: -1.00 -78.10 263.59 0.34 -77.76 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 0.37 Total: 19.20 kcal Atomic # 6 Polarization: -54.05 SS G_CDS: 3.43 Total: -50.63 kcal Atomic # 7 Polarization: -110.60 SS G_CDS: -1.46 Total: -112.06 kcal Atomic # 8 Polarization: -120.54 SS G_CDS: -3.74 Total: -124.29 kcal Atomic # 14 Polarization: 41.46 SS G_CDS: 2.03 Total: 43.49 kcal Atomic # 16 Polarization: 146.81 SS G_CDS: -0.28 Total: 146.53 kcal Total: -78.10 0.34 -77.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000708247170.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.374 kcal (2) G-P(sol) polarization free energy of solvation -78.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds