Wall clock time and date at job start Mon Mar 30 2020 03:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30668 * 1 3 3 Si 1.86808 * 119.99695 * 2 1 4 4 H 1.48501 * 109.46665 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46869 * 299.99144 * 3 2 1 6 6 H 1.48493 * 109.47305 * 59.99199 * 3 2 1 7 7 C 1.40045 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99992 * 180.02562 * 7 2 1 9 9 C 1.46368 * 119.99878 * 0.02562 * 7 2 1 10 10 O 1.21686 * 120.00282 * 0.27411 * 9 7 2 11 11 N 1.34784 * 119.99821 * 180.02562 * 9 7 2 12 12 C 1.46499 * 119.99971 * 180.02562 * 11 9 7 13 13 C 1.50697 * 109.47276 * 180.02562 * 12 11 9 14 14 C 1.33564 * 126.02290 * 89.99860 * 13 12 11 15 15 N 1.31863 * 114.51190 * 180.02562 * 14 13 12 16 16 C 1.29139 * 117.07848 * 0.02562 * 15 14 13 17 17 Cl 1.73603 * 124.92440 * 180.02562 * 16 15 14 18 18 S 1.70980 * 110.15103 * 359.72464 * 16 15 14 19 19 H 0.97000 * 120.00448 * 0.02562 * 1 2 3 20 20 H 0.96999 * 120.00044 * 0.02562 * 11 9 7 21 21 H 1.09004 * 109.47024 * 300.00310 * 12 11 9 22 22 H 1.09005 * 109.47136 * 59.99926 * 12 11 9 23 23 H 1.08001 * 122.74320 * 359.96442 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6179 0.0000 4 1 3.7006 1.3465 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8817 2.3966 1.2123 7 6 2.0069 -1.2128 0.0005 8 1 3.0869 -1.2128 0.0010 9 6 1.2751 -2.4804 0.0005 10 8 0.0583 -2.4805 -0.0050 11 7 1.9491 -3.6476 0.0016 12 6 1.2167 -4.9164 0.0010 13 6 2.1960 -6.0618 0.0030 14 6 2.7048 -6.6583 1.0843 15 7 3.5452 -7.6402 0.8229 16 6 3.7731 -7.9036 -0.4206 17 17 4.8385 -9.1486 -0.9938 18 16 2.8669 -6.8537 -1.4207 19 1 -0.4851 0.8400 -0.0004 20 1 2.9191 -3.6476 0.0027 21 1 0.5889 -4.9739 0.8903 22 1 0.5910 -4.9743 -0.8897 23 1 2.4495 -6.3602 2.0905 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000718871740.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:53 Heat of formation + Delta-G solvation = -25.334050 kcal Electronic energy + Delta-G solvation = -12755.535580 eV Core-core repulsion = 10141.577883 eV Total energy + Delta-G solvation = -2613.957698 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.92110 -39.35832 -38.04407 -35.63620 -34.50614 -31.84298 -28.81298 -27.23453 -25.11140 -21.87235 -21.37953 -19.84807 -19.04339 -17.50898 -17.11161 -16.44416 -15.97655 -15.75371 -15.40720 -15.24199 -14.46269 -13.91186 -13.61100 -13.14708 -12.90602 -12.79300 -12.64140 -12.53637 -12.36895 -11.97405 -10.95402 -10.92262 -10.61378 -10.09445 -9.77734 -9.56517 -8.29518 -6.85986 -0.67504 -0.39836 0.44448 0.75550 1.41637 1.42531 1.51021 1.60180 2.26081 2.46520 3.16336 3.44861 3.59869 3.70791 4.06661 4.64781 4.71771 4.88469 5.33133 5.85272 6.10937 6.23248 6.31804 6.87264 7.47543 8.45866 8.65859 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.051345 B = 0.004589 C = 0.004427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.198768 B = 6099.517176 C = 6322.669125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.031 3.969 3 Si 0.996 3.004 4 H -0.248 1.248 5 H -0.269 1.269 6 H -0.269 1.269 7 C -0.571 4.571 8 H 0.087 0.913 9 C 0.541 3.459 10 O -0.628 6.628 11 N -0.751 5.751 12 C 0.213 3.787 13 C -0.231 4.231 14 C 0.063 3.937 15 N -0.481 5.481 16 C 0.053 3.947 17 Cl 0.038 6.962 18 S 0.249 5.751 19 H 0.275 0.725 20 H 0.395 0.605 21 H 0.071 0.929 22 H 0.057 0.943 23 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.399 -13.141 -2.635 16.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.184 4.184 3 Si 0.815 3.185 4 H -0.171 1.171 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.608 4.608 8 H 0.105 0.895 9 C 0.346 3.654 10 O -0.515 6.515 11 N -0.407 5.407 12 C 0.087 3.913 13 C -0.353 4.353 14 C -0.089 4.089 15 N -0.198 5.198 16 C -0.248 4.248 17 Cl 0.066 6.934 18 S 0.499 5.501 19 H 0.085 0.915 20 H 0.228 0.772 21 H 0.089 0.911 22 H 0.075 0.925 23 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 8.644 -13.455 -3.380 16.346 hybrid contribution 0.385 0.626 0.939 1.192 sum 9.029 -12.830 -2.441 15.877 Atomic orbital electron populations 1.70170 1.09447 1.28981 1.36320 1.26921 0.95492 1.04816 0.91193 0.84994 0.79353 0.75571 0.78538 1.17107 1.19350 1.19397 1.21441 0.94770 0.89954 1.54607 0.89465 1.18568 0.86814 0.83991 0.76069 1.90570 1.16017 1.87732 1.57152 1.45916 1.09285 1.03902 1.81591 1.19116 0.90800 0.79552 1.01882 1.26126 1.07735 1.05306 0.96166 1.21819 0.94115 0.91681 1.01247 1.66095 1.17274 1.17776 1.18688 1.27319 1.02882 1.00848 0.93792 1.98426 1.61200 1.48207 1.85615 1.84113 1.34978 1.23659 1.07338 0.91478 0.77167 0.91135 0.92507 0.78462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.99 11.83 21.83 0.26 -48.74 14 2 C 0.03 1.70 5.50 85.30 0.47 2.17 14 3 Si 1.00 39.90 29.56 68.60 2.03 41.93 14 4 H -0.25 -9.21 7.11 99.48 0.71 -8.50 14 5 H -0.27 -10.38 7.11 99.48 0.71 -9.67 14 6 H -0.27 -10.41 7.11 99.48 0.71 -9.71 14 7 C -0.57 -31.41 9.54 24.83 0.24 -31.17 14 8 H 0.09 4.31 7.85 -2.91 -0.02 4.29 14 9 C 0.54 30.16 7.75 86.36 0.67 30.83 14 10 O -0.63 -40.54 15.02 -4.30 -0.06 -40.61 14 11 N -0.75 -31.89 5.54 -471.14 -2.61 -34.50 14 12 C 0.21 7.59 6.20 85.63 0.53 8.12 14 13 C -0.23 -6.43 5.96 24.62 0.15 -6.28 14 14 C 0.06 1.67 11.25 83.63 0.94 2.61 14 15 N -0.48 -13.01 10.55 -194.44 -2.05 -15.06 14 16 C 0.05 1.29 8.03 130.64 1.05 2.33 14 17 Cl 0.04 0.75 29.33 -2.72 -0.08 0.67 14 18 S 0.25 5.75 23.22 -56.49 -1.31 4.44 14 19 H 0.28 14.85 8.29 -92.71 -0.77 14.08 14 20 H 0.39 14.75 8.44 -92.71 -0.78 13.97 14 21 H 0.07 2.61 8.14 -2.38 -0.02 2.59 14 22 H 0.06 2.13 8.14 -2.38 -0.02 2.11 14 23 H 0.20 4.56 8.06 -2.91 -0.02 4.54 14 Total: -1.00 -70.24 249.54 0.69 -69.55 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.48 Total: 13.69 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 4.04 Total: 8.61 kcal Atomic # 7 Polarization: -93.89 SS G_CDS: -4.41 Total: -98.30 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -0.06 Total: -40.61 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.31 Total: 4.44 kcal Atomic # 17 Polarization: 0.75 SS G_CDS: -0.08 Total: 0.67 kcal Total: -70.24 0.69 -69.55 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000718871740.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.217 kcal (2) G-P(sol) polarization free energy of solvation -70.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds