Wall clock time and date at job start Mon Mar 30 2020 03:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86798 * 119.99920 * 2 1 4 4 H 1.48508 * 109.47047 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47200 * 299.99751 * 3 2 1 6 6 H 1.48500 * 109.47402 * 59.99995 * 3 2 1 7 7 C 1.40044 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.46378 * 120.00361 * 0.02562 * 7 2 1 10 10 O 1.21683 * 119.99763 * 359.97438 * 9 7 2 11 11 N 1.34772 * 120.00174 * 180.02562 * 9 7 2 12 12 C 1.46495 * 120.00283 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.47485 * 179.97438 * 12 11 9 14 14 N 1.28985 * 124.90273 * 89.99897 * 13 12 11 15 15 C 1.31834 * 117.13612 * 179.97438 * 14 13 12 16 16 C 1.33751 * 114.45808 * 0.02562 * 15 14 13 17 17 Cl 1.73608 * 126.03986 * 179.97438 * 16 15 14 18 18 S 1.70978 * 124.90068 * 269.95867 * 13 12 11 19 19 H 0.97000 * 119.99770 * 0.02562 * 1 2 3 20 20 H 0.97001 * 120.00138 * 359.97438 * 11 9 7 21 21 H 1.09004 * 109.47235 * 59.99543 * 12 11 9 22 22 H 1.08998 * 109.47385 * 299.99843 * 12 11 9 23 23 H 1.08001 * 122.76653 * 179.72777 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 3.7008 1.3464 0.0006 5 1 1.8820 2.3964 -1.2126 6 1 1.8820 2.3965 1.2125 7 6 2.0069 -1.2128 0.0005 8 1 3.0870 -1.2129 0.0001 9 6 1.2750 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9489 -3.6477 0.0016 12 6 1.2165 -4.9164 0.0022 13 6 2.1957 -6.0618 0.0027 14 7 2.6753 -6.6223 1.0608 15 6 3.5237 -7.6156 0.8830 16 6 3.7734 -7.9082 -0.3980 17 17 4.8378 -9.1535 -0.9726 18 16 2.8306 -6.8067 -1.3993 19 1 -0.4850 0.8401 -0.0004 20 1 2.9189 -3.6477 0.0020 21 1 0.5901 -4.9747 -0.8880 22 1 0.5895 -4.9736 0.8919 23 1 3.9831 -8.1460 1.7041 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000719386276.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:55 Heat of formation + Delta-G solvation = -0.291184 kcal Electronic energy + Delta-G solvation = -12757.166276 eV Core-core repulsion = 10144.294519 eV Total energy + Delta-G solvation = -2612.871757 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 245.997 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.82502 -37.37972 -36.96850 -33.70477 -32.39236 -30.26690 -27.53424 -25.80849 -23.61447 -20.20412 -19.80109 -18.54540 -17.25253 -16.04687 -15.44666 -15.04140 -14.53902 -14.33288 -13.93504 -13.23940 -12.91024 -12.39722 -12.32415 -12.06675 -11.54158 -11.18745 -11.01456 -10.98341 -10.53343 -10.24068 -9.71696 -9.36310 -9.02036 -8.90629 -7.70867 -7.69108 -6.24545 -4.70204 0.41031 0.74677 1.50287 2.01738 2.61845 3.11337 3.19843 3.24338 4.04342 4.13629 4.52434 4.87553 4.98221 5.10495 5.63256 5.81221 6.09112 6.18595 7.39093 7.56638 7.76878 7.92113 8.25049 8.97114 9.38896 10.51430 10.69466 Molecular weight = 246.00amu Principal moments of inertia in cm(-1) A = 0.051408 B = 0.004608 C = 0.004444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.536242 B = 6074.891118 C = 6298.435234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.910 3.090 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.556 3.444 10 O -0.577 6.577 11 N -0.761 5.761 12 C 0.205 3.795 13 C 0.058 3.942 14 N -0.456 5.456 15 C 0.060 3.940 16 C -0.209 4.209 17 Cl -0.004 7.004 18 S 0.187 5.813 19 H 0.269 0.731 20 H 0.383 0.617 21 H 0.076 0.924 22 H 0.086 0.914 23 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -14.086 -2.468 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.133 4.133 3 Si 0.734 3.266 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.088 0.912 9 C 0.361 3.639 10 O -0.460 6.460 11 N -0.419 5.419 12 C 0.077 3.923 13 C -0.219 4.219 14 N -0.171 5.171 15 C -0.094 4.094 16 C -0.357 4.357 17 Cl 0.024 6.976 18 S 0.440 5.560 19 H 0.080 0.920 20 H 0.215 0.785 21 H 0.094 0.906 22 H 0.104 0.896 23 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.121 -13.732 -3.087 15.774 hybrid contribution 1.530 0.038 0.722 1.692 sum 8.651 -13.694 -2.365 16.370 Atomic orbital electron populations 1.70024 1.07073 1.27343 1.35040 1.25710 0.94651 1.00346 0.92546 0.86286 0.80486 0.81559 0.78268 1.18733 1.20098 1.20096 1.20880 0.93693 0.89013 1.54250 0.91221 1.18274 0.87232 0.82013 0.76384 1.90614 1.13966 1.86408 1.54969 1.46243 1.08754 1.03556 1.83314 1.19505 0.90076 0.79490 1.03280 1.27584 1.01923 1.01900 0.90524 1.66544 1.10700 1.08635 1.31172 1.21951 0.96962 0.95557 0.94947 1.27018 1.07704 1.03456 0.97520 1.98358 1.61976 1.48941 1.88314 1.84278 1.36352 1.24747 1.10621 0.92028 0.78545 0.90617 0.89622 0.80116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.59 11.83 55.55 0.66 -21.93 14 2 C 0.09 2.40 5.50 -17.37 -0.10 2.31 14 3 Si 0.91 19.83 29.56 -169.99 -5.02 14.80 14 4 H -0.26 -5.55 7.11 56.52 0.40 -5.15 14 5 H -0.28 -5.88 7.11 56.52 0.40 -5.47 14 6 H -0.28 -5.91 7.11 56.52 0.40 -5.51 14 7 C -0.54 -15.03 9.54 -35.63 -0.34 -15.37 14 8 H 0.07 1.78 7.85 -52.48 -0.41 1.37 14 9 C 0.56 15.48 7.75 -12.99 -0.10 15.38 14 10 O -0.58 -18.22 15.02 5.20 0.08 -18.14 14 11 N -0.76 -16.70 5.54 -62.91 -0.35 -17.05 14 12 C 0.20 3.84 6.25 -5.20 -0.03 3.81 14 13 C 0.06 0.91 6.75 -13.48 -0.09 0.82 14 14 N -0.46 -7.13 10.54 -11.84 -0.12 -7.26 14 15 C 0.06 0.77 11.32 -19.12 -0.22 0.55 14 16 C -0.21 -2.51 7.21 29.16 0.21 -2.30 14 17 Cl 0.00 -0.04 29.31 -51.86 -1.52 -1.56 14 18 S 0.19 2.38 23.18 -107.50 -2.49 -0.11 14 19 H 0.27 7.16 8.29 -40.82 -0.34 6.82 14 20 H 0.38 7.61 8.44 -40.82 -0.34 7.27 14 21 H 0.08 1.39 8.14 -51.93 -0.42 0.97 14 22 H 0.09 1.72 8.14 -51.93 -0.42 1.29 14 23 H 0.18 1.82 8.06 -52.49 -0.42 1.39 14 LS Contribution 249.55 15.07 3.76 3.76 Total: -1.00 -32.48 249.55 -6.84 -39.32 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -1.16 Total: 2.99 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -0.67 Total: 5.19 kcal Atomic # 7 Polarization: -46.43 SS G_CDS: 0.18 Total: -46.24 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: 0.08 Total: -18.14 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 2.38 SS G_CDS: -2.49 Total: -0.11 kcal Atomic # 17 Polarization: -0.04 SS G_CDS: -1.52 Total: -1.56 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -32.48 -6.84 -39.32 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000719386276.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.025 kcal (2) G-P(sol) polarization free energy of solvation -32.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds