Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00371 * 2 1 4 4 H 1.48498 * 109.47495 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46825 * 300.00293 * 3 2 1 6 6 H 1.48497 * 109.46906 * 59.99842 * 3 2 1 7 7 C 1.37882 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00057 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99572 * 359.97438 * 7 2 1 10 10 O 1.42096 * 102.99892 * 66.15044 * 9 7 2 11 11 C 1.81396 * 102.99695 * 179.97438 * 9 7 2 12 12 C 1.53002 * 109.47197 * 185.00114 * 11 9 7 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 O 1.20826 * 119.99685 * 0.02562 * 15 14 13 17 17 O 1.34232 * 120.00079 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 19 19 C 1.52997 * 109.47360 * 304.99933 * 11 9 7 20 20 H 0.97002 * 119.99627 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47587 * 64.99841 * 11 9 7 22 22 H 1.08992 * 109.47063 * 59.99974 * 12 11 9 23 23 H 1.09004 * 109.46733 * 299.99687 * 12 11 9 24 24 H 1.09002 * 109.47398 * 59.99826 * 13 12 11 25 25 H 1.09001 * 109.47194 * 180.02562 * 13 12 11 26 26 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 27 27 H 0.96708 * 116.99537 * 180.02562 * 17 15 14 28 28 H 1.09000 * 109.47486 * 180.02562 * 18 14 13 29 29 H 1.09002 * 109.46716 * 60.00091 * 18 14 13 30 30 H 1.09002 * 109.47153 * 300.00180 * 19 11 9 31 31 H 1.09001 * 109.47289 * 60.00264 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4783 -2.7166 -1.2666 11 6 2.4501 -3.9572 -0.0021 12 6 1.8429 -5.3559 -0.1280 13 6 2.9618 -6.3994 -0.1287 14 6 3.8986 -6.1419 -1.3106 15 6 5.0004 -7.1700 -1.3118 16 8 5.0327 -8.0217 -0.4553 17 8 5.9452 -7.1402 -2.2648 18 6 4.5058 -4.7432 -1.1849 19 6 3.3864 -3.6994 -1.1843 20 1 -0.4850 0.8401 -0.0004 21 1 3.0128 -3.8878 0.9288 22 1 1.2803 -5.4253 -1.0589 23 1 1.1759 -5.5396 0.7143 24 1 3.5241 -6.3299 0.8025 25 1 2.5293 -7.3959 -0.2189 26 1 3.3363 -6.2114 -2.2418 27 1 6.6313 -7.8206 -2.2242 28 1 5.1728 -4.5595 -2.0271 29 1 5.0681 -4.6736 -0.2537 30 1 2.8238 -3.7688 -2.1153 31 1 3.8190 -2.7030 -1.0947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720422601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = -166.521558 kcal Electronic energy + Delta-G solvation = -16131.580496 eV Core-core repulsion = 13310.164722 eV Total energy + Delta-G solvation = -2821.415774 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.46586 -37.57759 -36.09931 -33.56972 -32.78137 -30.92056 -30.44893 -25.81609 -24.28367 -22.36985 -20.91665 -19.45163 -18.06493 -17.84590 -16.64057 -15.76506 -15.49540 -15.23233 -14.40125 -13.83600 -13.72202 -13.50710 -13.13366 -12.65256 -12.23939 -11.90112 -11.60220 -11.53488 -11.34855 -11.13755 -11.09519 -10.83646 -10.68364 -10.48928 -10.32198 -10.22802 -9.87643 -9.73129 -8.99562 -8.12892 -6.79082 -6.28294 -4.77653 2.20363 3.05400 3.10512 3.19022 3.23788 3.66790 4.18706 4.78357 4.86838 4.92231 5.10831 5.27823 5.48302 5.53312 5.65638 5.76623 5.86917 5.94247 6.00203 6.13413 6.22904 6.32096 6.43116 6.47064 6.55239 6.68849 6.79644 6.98182 7.50464 7.87679 8.22456 9.11521 10.49049 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040853 B = 0.006008 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.211991 B = 4659.310792 C = 5088.899852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.119 3.881 3 Si 0.903 3.097 4 H -0.268 1.268 5 H -0.278 1.278 6 H -0.274 1.274 7 C -0.818 4.818 8 H 0.081 0.919 9 S 1.343 4.657 10 O -0.903 6.903 11 C -0.448 4.448 12 C -0.090 4.090 13 C -0.097 4.097 14 C -0.078 4.078 15 C 0.483 3.517 16 O -0.521 6.521 17 O -0.517 6.517 18 C -0.106 4.106 19 C -0.097 4.097 20 H 0.279 0.721 21 H 0.100 0.900 22 H 0.062 0.938 23 H 0.073 0.927 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.105 0.895 27 H 0.404 0.596 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.045 -9.677 1.753 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.094 4.094 3 Si 0.729 3.271 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.200 1.200 7 C -0.959 4.959 8 H 0.099 0.901 9 S 1.541 4.459 10 O -0.898 6.898 11 C -0.558 4.558 12 C -0.128 4.128 13 C -0.135 4.135 14 C -0.097 4.097 15 C 0.326 3.674 16 O -0.409 6.409 17 O -0.328 6.328 18 C -0.144 4.144 19 C -0.135 4.135 20 H 0.089 0.911 21 H 0.118 0.882 22 H 0.081 0.919 23 H 0.091 0.909 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.123 0.877 27 H 0.262 0.738 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.597 -9.716 1.952 11.381 hybrid contribution 2.562 0.837 -1.790 3.236 sum 8.159 -8.879 0.162 12.059 Atomic orbital electron populations 1.69906 1.06456 1.29040 1.43562 1.24749 0.94447 0.99856 0.90323 0.86404 0.80525 0.82036 0.78163 1.19187 1.20405 1.19953 1.27504 1.01879 1.05928 1.60623 0.90074 1.69027 0.84462 0.84590 1.07775 1.92808 1.64690 1.85796 1.46470 1.28130 1.15660 1.10425 1.01602 1.21130 0.96577 0.92801 1.02268 1.21445 0.96355 0.99194 0.96522 1.21157 0.92599 0.93135 1.02788 1.23902 0.81665 0.84409 0.77419 1.90682 1.74927 1.37710 1.37561 1.84598 1.38722 1.56988 1.52508 1.21587 0.98772 0.92074 1.01996 1.21431 0.95454 0.98145 0.98468 0.91133 0.88207 0.91937 0.90860 0.91115 0.91717 0.87664 0.73791 0.91607 0.91787 0.91977 0.90762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.91 13.15 55.43 0.73 -23.18 16 2 C 0.12 3.20 5.46 -17.82 -0.10 3.10 16 3 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.82 -21.35 8.74 30.60 0.27 -21.08 16 8 H 0.08 2.05 6.66 -52.49 -0.35 1.70 16 9 S 1.34 30.96 12.54 -107.50 -1.35 29.61 16 10 O -0.90 -26.39 17.69 -35.23 -0.62 -27.02 16 11 C -0.45 -8.17 2.69 -26.73 -0.07 -8.24 16 12 C -0.09 -1.42 5.21 -26.73 -0.14 -1.56 16 13 C -0.10 -1.38 4.49 -26.73 -0.12 -1.50 16 14 C -0.08 -1.11 2.63 -91.78 -0.24 -1.35 16 15 C 0.48 6.61 7.63 36.00 0.27 6.88 16 16 O -0.52 -8.29 16.74 -18.75 -0.31 -8.61 16 17 O -0.52 -5.70 13.33 -39.26 -0.52 -6.22 16 18 C -0.11 -1.60 5.14 -26.71 -0.14 -1.74 16 19 C -0.10 -1.82 4.94 -26.71 -0.13 -1.95 16 20 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 21 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 22 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 25 H 0.06 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.11 1.46 8.14 -51.93 -0.42 1.03 16 27 H 0.40 2.57 9.10 45.56 0.41 2.98 16 28 H 0.07 0.94 8.12 -51.93 -0.42 0.52 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.29 8.10 -51.93 -0.42 0.87 16 31 H 0.07 1.50 6.51 -51.93 -0.34 1.16 16 LS Contribution 274.94 15.07 4.14 4.14 Total: -1.00 -34.69 274.94 -6.56 -41.25 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.20 Total: 2.10 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: -0.40 Total: -27.45 kcal Atomic # 7 Polarization: -23.91 SS G_CDS: 0.73 Total: -23.18 kcal Atomic # 8 Polarization: -40.38 SS G_CDS: -1.46 Total: -41.84 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 30.96 SS G_CDS: -1.35 Total: 29.61 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.69 -6.56 -41.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720422601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.269 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds