Wall clock time and date at job start Mon Mar 30 2020 03:41:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00371 * 2 1 4 4 H 1.48498 * 109.47495 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46825 * 300.00293 * 3 2 1 6 6 H 1.48497 * 109.46906 * 59.99842 * 3 2 1 7 7 C 1.37882 * 120.00083 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00057 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99572 * 359.97438 * 7 2 1 10 10 O 1.42096 * 102.99892 * 66.15044 * 9 7 2 11 11 C 1.81396 * 102.99695 * 179.97438 * 9 7 2 12 12 C 1.53002 * 109.47197 * 185.00114 * 11 9 7 13 13 C 1.53000 * 109.47233 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47060 * 299.99657 * 13 12 11 15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12 16 16 O 1.20826 * 119.99685 * 0.02562 * 15 14 13 17 17 O 1.34232 * 120.00079 * 179.97438 * 15 14 13 18 18 C 1.52999 * 109.47317 * 59.99960 * 14 13 12 19 19 C 1.52997 * 109.47360 * 304.99933 * 11 9 7 20 20 H 0.97002 * 119.99627 * 0.02562 * 1 2 3 21 21 H 1.09002 * 109.47587 * 64.99841 * 11 9 7 22 22 H 1.08992 * 109.47063 * 59.99974 * 12 11 9 23 23 H 1.09004 * 109.46733 * 299.99687 * 12 11 9 24 24 H 1.09002 * 109.47398 * 59.99826 * 13 12 11 25 25 H 1.09001 * 109.47194 * 180.02562 * 13 12 11 26 26 H 1.09002 * 109.47153 * 300.00319 * 14 13 12 27 27 H 0.96708 * 116.99537 * 180.02562 * 17 15 14 28 28 H 1.09000 * 109.47486 * 180.02562 * 18 14 13 29 29 H 1.09002 * 109.46716 * 60.00091 * 18 14 13 30 30 H 1.09002 * 109.47153 * 300.00180 * 19 11 9 31 31 H 1.09001 * 109.47289 * 60.00264 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1234 -2.7200 -0.0005 10 8 0.4783 -2.7166 -1.2666 11 6 2.4501 -3.9572 -0.0021 12 6 1.8429 -5.3559 -0.1280 13 6 2.9618 -6.3994 -0.1287 14 6 3.8986 -6.1419 -1.3106 15 6 5.0004 -7.1700 -1.3118 16 8 5.0327 -8.0217 -0.4553 17 8 5.9452 -7.1402 -2.2648 18 6 4.5058 -4.7432 -1.1849 19 6 3.3864 -3.6994 -1.1843 20 1 -0.4850 0.8401 -0.0004 21 1 3.0128 -3.8878 0.9288 22 1 1.2803 -5.4253 -1.0589 23 1 1.1759 -5.5396 0.7143 24 1 3.5241 -6.3299 0.8025 25 1 2.5293 -7.3959 -0.2189 26 1 3.3363 -6.2114 -2.2418 27 1 6.6313 -7.8206 -2.2242 28 1 5.1728 -4.5595 -2.0271 29 1 5.0681 -4.6736 -0.2537 30 1 2.8238 -3.7688 -2.1153 31 1 3.8190 -2.7030 -1.0947 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720422601.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:15 Heat of formation + Delta-G solvation = -192.380669 kcal Electronic energy + Delta-G solvation = -16132.701831 eV Core-core repulsion = 13310.164722 eV Total energy + Delta-G solvation = -2822.537109 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.53485 -38.83288 -37.11155 -35.64762 -34.81446 -32.24436 -31.76848 -27.83869 -25.49735 -23.69101 -22.14232 -20.75352 -19.83923 -19.01853 -17.76547 -17.41076 -17.06571 -16.84290 -15.82877 -15.37965 -15.19207 -14.87728 -14.61396 -14.01147 -13.85389 -13.23500 -13.18922 -13.06063 -12.81792 -12.76383 -12.57368 -12.40464 -12.23977 -12.08608 -11.91683 -11.47891 -11.35922 -11.10211 -10.98563 -10.06955 -8.72426 -8.25644 -6.84186 1.15088 1.31494 1.35480 1.48238 1.86633 2.11753 2.34108 2.86301 3.38755 3.62921 3.70452 3.90741 4.11509 4.28500 4.37437 4.39547 4.50444 4.59038 4.62708 4.82213 4.97355 5.05055 5.10746 5.19867 5.28861 5.33696 5.50047 5.50647 5.59021 6.18301 6.98170 7.07444 8.49766 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.040853 B = 0.006008 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.211991 B = 4659.310792 C = 5088.899852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.065 3.935 3 Si 0.965 3.035 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.839 4.839 8 H 0.083 0.917 9 S 1.357 4.643 10 O -0.972 6.972 11 C -0.432 4.432 12 C -0.090 4.090 13 C -0.090 4.090 14 C -0.082 4.082 15 C 0.495 3.505 16 O -0.543 6.543 17 O -0.512 6.512 18 C -0.095 4.095 19 C -0.098 4.098 20 H 0.283 0.717 21 H 0.128 0.872 22 H 0.043 0.957 23 H 0.099 0.901 24 H 0.078 0.922 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.427 0.573 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.914 -10.504 2.569 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.178 1.178 7 C -0.979 4.979 8 H 0.101 0.899 9 S 1.561 4.439 10 O -0.967 6.967 11 C -0.547 4.547 12 C -0.129 4.129 13 C -0.128 4.128 14 C -0.101 4.101 15 C 0.339 3.661 16 O -0.434 6.434 17 O -0.326 6.326 18 C -0.134 4.134 19 C -0.136 4.136 20 H 0.093 0.907 21 H 0.146 0.854 22 H 0.062 0.938 23 H 0.117 0.883 24 H 0.097 0.903 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.288 0.712 28 H 0.094 0.906 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.455 -10.515 2.762 13.182 hybrid contribution 2.088 0.979 -2.069 3.099 sum 9.543 -9.537 0.693 13.509 Atomic orbital electron populations 1.69994 1.07894 1.30131 1.44616 1.25666 0.95274 1.03532 0.89950 0.85462 0.79323 0.77928 0.78581 1.18607 1.21009 1.17753 1.27852 1.02163 1.07518 1.60378 0.89910 1.67926 0.85661 0.84287 1.06054 1.92717 1.68087 1.87022 1.48893 1.27833 1.13885 1.10028 1.02922 1.21180 0.97550 0.91562 1.02559 1.21375 0.95639 0.98954 0.96876 1.21125 0.93142 0.92817 1.02998 1.23512 0.81651 0.83651 0.77308 1.90686 1.75537 1.38568 1.38572 1.84537 1.38844 1.57882 1.51289 1.21455 0.97398 0.91369 1.03151 1.21360 0.96467 0.98630 0.97149 0.90707 0.85430 0.93783 0.88260 0.90344 0.90431 0.87561 0.71159 0.90588 0.90537 0.94866 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -50.72 13.15 21.45 0.28 -50.44 16 2 C 0.07 3.52 5.46 84.66 0.46 3.98 16 3 Si 0.96 41.67 29.54 68.60 2.03 43.69 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 5 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 7 C -0.84 -44.20 8.74 67.74 0.59 -43.61 16 8 H 0.08 4.18 6.66 -2.92 -0.02 4.17 16 9 S 1.36 63.62 12.54 -56.49 -0.71 62.91 16 10 O -0.97 -58.93 17.69 -148.98 -2.64 -61.56 16 11 C -0.43 -15.29 2.69 30.59 0.08 -15.21 16 12 C -0.09 -2.71 5.21 30.60 0.16 -2.55 16 13 C -0.09 -2.32 4.49 30.59 0.14 -2.18 16 14 C -0.08 -2.13 2.63 -11.54 -0.03 -2.16 16 15 C 0.50 12.04 7.63 71.23 0.54 12.58 16 16 O -0.54 -15.68 16.74 21.97 0.37 -15.31 16 17 O -0.51 -9.59 13.33 -51.44 -0.69 -10.28 16 18 C -0.10 -2.68 5.14 30.61 0.16 -2.52 16 19 C -0.10 -3.64 4.94 30.61 0.15 -3.48 16 20 H 0.28 14.84 8.31 -92.71 -0.77 14.07 16 21 H 0.13 3.88 8.14 -2.39 -0.02 3.86 16 22 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.08 1.95 8.10 -2.39 -0.02 1.93 16 25 H 0.08 1.85 8.10 -2.39 -0.02 1.83 16 26 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 27 H 0.43 3.91 9.10 -74.05 -0.67 3.23 16 28 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.03 1.40 8.10 -2.39 -0.02 1.38 16 31 H 0.05 2.23 6.51 -2.39 -0.02 2.21 16 Total: -1.00 -75.54 274.94 1.37 -74.17 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: 0.47 Total: 11.96 kcal Atomic # 6 Polarization: -57.40 SS G_CDS: 2.26 Total: -55.15 kcal Atomic # 7 Polarization: -50.72 SS G_CDS: 0.28 Total: -50.44 kcal Atomic # 8 Polarization: -84.20 SS G_CDS: -2.95 Total: -87.15 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.69 kcal Atomic # 16 Polarization: 63.62 SS G_CDS: -0.71 Total: 62.91 kcal Total: -75.54 1.37 -74.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720422601.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.212 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds