Wall clock time and date at job start Mon Mar 30 2020 03:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48501 * 109.47325 * 269.99948 * 3 2 1 5 5 H 1.48499 * 109.47230 * 29.99810 * 3 2 1 6 6 H 1.48503 * 109.47268 * 149.99936 * 3 2 1 7 7 C 1.37877 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00030 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99724 * 180.02562 * 7 2 1 10 10 O 1.42100 * 102.99915 * 293.85195 * 9 7 2 11 11 C 1.81404 * 102.99871 * 179.97438 * 9 7 2 12 12 C 1.53006 * 109.47098 * 54.99776 * 11 9 7 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00141 * 359.97438 * 15 14 13 17 17 O 1.34226 * 119.99900 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 19 19 C 1.52997 * 109.47118 * 174.99810 * 11 9 7 20 20 H 0.97000 * 120.00000 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46975 * 295.00028 * 11 9 7 22 22 H 1.08998 * 109.46505 * 59.99714 * 12 11 9 23 23 H 1.08996 * 109.46884 * 300.00595 * 12 11 9 24 24 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 25 25 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 26 26 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 27 27 H 0.96704 * 117.00221 * 180.02562 * 17 15 14 28 28 H 1.08992 * 109.47554 * 59.99639 * 18 14 13 29 29 H 1.09004 * 109.47108 * 179.97438 * 18 14 13 30 30 H 1.09002 * 109.47045 * 60.00047 * 19 11 9 31 31 H 1.09001 * 109.47375 * 299.99972 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 16 3.7665 -1.1940 0.0012 10 8 4.0866 -0.6344 -1.2651 11 6 4.1746 -2.9615 0.0026 12 6 3.4835 -3.6454 -1.1789 13 6 3.8282 -5.1361 -1.1781 14 6 5.3432 -5.3093 -1.3034 15 6 5.6828 -6.7775 -1.3021 16 8 4.8033 -7.6009 -1.2098 17 8 6.9622 -7.1706 -1.4033 18 6 6.0342 -4.6255 -0.1220 19 6 5.6895 -3.1353 -0.1225 20 1 -0.4850 0.8400 -0.0004 21 1 3.8328 -3.4126 0.9341 22 1 3.8253 -3.1942 -2.1104 23 1 2.4043 -3.5215 -1.0898 24 1 3.3363 -5.6232 -2.0201 25 1 3.4867 -5.5874 -0.2466 26 1 5.6847 -4.8579 -2.2350 27 1 7.1307 -8.1228 -1.3984 28 1 5.6927 -5.0768 0.8095 29 1 7.1135 -4.7493 -0.2111 30 1 6.1818 -2.6481 0.7192 31 1 6.0313 -2.6842 -1.0541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720422643.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:17 Heat of formation + Delta-G solvation = -158.878836 kcal Electronic energy + Delta-G solvation = -16170.461352 eV Core-core repulsion = 13349.376991 eV Total energy + Delta-G solvation = -2821.084361 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.50002 -37.67016 -36.13023 -33.92856 -32.77033 -31.04475 -30.52960 -26.00110 -24.39254 -22.43431 -21.05045 -19.51336 -18.03624 -17.90758 -16.66463 -15.85948 -15.79432 -15.39534 -14.53272 -13.90775 -13.77657 -13.56744 -13.01390 -12.84871 -12.52189 -12.02990 -11.75392 -11.64427 -11.54626 -11.42922 -11.08249 -10.90787 -10.68955 -10.62123 -10.29458 -10.13707 -9.92003 -9.77886 -9.01390 -8.35745 -6.93492 -6.53242 -4.80499 2.18113 2.99383 3.04917 3.13466 3.32815 3.48563 4.09069 4.67816 4.77617 4.80043 4.83121 5.07893 5.36764 5.42628 5.54080 5.62972 5.77943 5.80811 5.86181 5.99398 6.10394 6.26846 6.28067 6.43600 6.46154 6.56336 6.76367 6.87249 7.71382 7.85201 8.44105 8.98179 10.55918 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.051702 B = 0.006054 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.432114 B = 4624.042382 C = 4975.954446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.130 3.870 3 Si 0.855 3.145 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.247 1.247 7 C -0.811 4.811 8 H 0.098 0.902 9 S 1.276 4.724 10 O -0.918 6.918 11 C -0.419 4.419 12 C -0.100 4.100 13 C -0.099 4.099 14 C -0.078 4.078 15 C 0.482 3.518 16 O -0.517 6.517 17 O -0.518 6.518 18 C -0.103 4.103 19 C -0.092 4.092 20 H 0.274 0.726 21 H 0.106 0.894 22 H 0.062 0.938 23 H 0.080 0.920 24 H 0.063 0.937 25 H 0.069 0.931 26 H 0.106 0.894 27 H 0.405 0.595 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.519 -8.144 3.209 15.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.084 4.084 3 Si 0.679 3.321 4 H -0.185 1.185 5 H -0.198 1.198 6 H -0.171 1.171 7 C -0.952 4.952 8 H 0.116 0.884 9 S 1.479 4.521 10 O -0.912 6.912 11 C -0.532 4.532 12 C -0.138 4.138 13 C -0.138 4.138 14 C -0.097 4.097 15 C 0.325 3.675 16 O -0.405 6.405 17 O -0.329 6.329 18 C -0.141 4.141 19 C -0.130 4.130 20 H 0.084 0.916 21 H 0.124 0.876 22 H 0.081 0.919 23 H 0.098 0.902 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.124 0.876 27 H 0.263 0.737 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 12.686 -7.086 3.207 14.881 hybrid contribution -0.856 -1.129 -1.824 2.310 sum 11.830 -8.216 1.383 14.469 Atomic orbital electron populations 1.70016 1.06748 1.28350 1.43054 1.24639 0.94490 0.99182 0.90100 0.86998 0.80564 0.83849 0.80659 1.18530 1.19792 1.17088 1.27280 1.07931 0.99370 1.60659 0.88367 1.69057 0.91141 0.83516 1.08353 1.92838 1.83996 1.67655 1.46721 1.27662 0.98765 1.24214 1.02534 1.21452 1.01583 0.92848 0.97922 1.21497 0.91276 0.98207 1.02796 1.21165 0.99120 0.86756 1.02657 1.23869 0.79504 0.93113 0.71051 1.90701 1.48857 1.55329 1.45642 1.84577 1.30334 1.32705 1.85316 1.21493 0.99618 0.96635 0.96377 1.21162 0.94622 0.94682 1.02522 0.91586 0.87616 0.91947 0.90165 0.91845 0.91190 0.87607 0.73740 0.91393 0.91033 0.90779 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.62 13.96 55.43 0.77 -23.84 16 2 C 0.13 3.62 5.47 -17.82 -0.10 3.52 16 3 Si 0.85 20.56 26.71 -169.99 -4.54 16.02 16 4 H -0.26 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.25 -5.24 6.72 56.52 0.38 -4.86 16 7 C -0.81 -21.70 9.29 30.60 0.28 -21.41 16 8 H 0.10 2.79 6.91 -52.49 -0.36 2.43 16 9 S 1.28 27.75 11.10 -107.50 -1.19 26.55 16 10 O -0.92 -24.74 16.34 -35.23 -0.58 -25.32 16 11 C -0.42 -7.36 2.69 -26.73 -0.07 -7.43 16 12 C -0.10 -1.90 4.94 -26.73 -0.13 -2.03 16 13 C -0.10 -1.59 4.49 -26.73 -0.12 -1.71 16 14 C -0.08 -1.07 2.63 -91.77 -0.24 -1.31 16 15 C 0.48 6.42 7.62 36.01 0.27 6.69 16 16 O -0.52 -8.41 16.74 -18.75 -0.31 -8.72 16 17 O -0.52 -5.23 13.33 -39.25 -0.52 -5.76 16 18 C -0.10 -1.28 5.13 -26.76 -0.14 -1.42 16 19 C -0.09 -1.32 5.21 -26.76 -0.14 -1.46 16 20 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 21 H 0.11 1.68 8.14 -51.92 -0.42 1.26 16 22 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 23 H 0.08 1.71 6.51 -51.93 -0.34 1.37 16 24 H 0.06 1.02 8.10 -51.93 -0.42 0.60 16 25 H 0.07 1.12 8.10 -51.93 -0.42 0.70 16 26 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 27 H 0.40 2.29 9.10 45.56 0.41 2.71 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.77 8.11 -51.93 -0.42 0.35 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 270.54 15.07 4.08 4.08 Total: -1.00 -34.88 270.54 -5.91 -40.79 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -3.24 Total: 2.76 kcal Atomic # 6 Polarization: -26.18 SS G_CDS: -0.38 Total: -26.56 kcal Atomic # 7 Polarization: -24.62 SS G_CDS: 0.77 Total: -23.84 kcal Atomic # 8 Polarization: -38.39 SS G_CDS: -1.41 Total: -39.80 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.54 Total: 16.02 kcal Atomic # 16 Polarization: 27.75 SS G_CDS: -1.19 Total: 26.55 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -34.88 -5.91 -40.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720422643.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.088 kcal (2) G-P(sol) polarization free energy of solvation -34.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds