Wall clock time and date at job start Mon Mar 30 2020 03:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86793 * 119.99984 * 2 1 4 4 H 1.48501 * 109.47325 * 269.99948 * 3 2 1 5 5 H 1.48499 * 109.47230 * 29.99810 * 3 2 1 6 6 H 1.48503 * 109.47268 * 149.99936 * 3 2 1 7 7 C 1.37877 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00030 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99724 * 180.02562 * 7 2 1 10 10 O 1.42100 * 102.99915 * 293.85195 * 9 7 2 11 11 C 1.81404 * 102.99871 * 179.97438 * 9 7 2 12 12 C 1.53006 * 109.47098 * 54.99776 * 11 9 7 13 13 C 1.52997 * 109.47127 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47060 * 300.00449 * 13 12 11 15 15 C 1.50703 * 109.46912 * 179.97438 * 14 13 12 16 16 O 1.20824 * 120.00141 * 359.97438 * 15 14 13 17 17 O 1.34226 * 119.99900 * 179.97438 * 15 14 13 18 18 C 1.52996 * 109.47328 * 60.00126 * 14 13 12 19 19 C 1.52997 * 109.47118 * 174.99810 * 11 9 7 20 20 H 0.97000 * 120.00000 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46975 * 295.00028 * 11 9 7 22 22 H 1.08998 * 109.46505 * 59.99714 * 12 11 9 23 23 H 1.08996 * 109.46884 * 300.00595 * 12 11 9 24 24 H 1.09002 * 109.47153 * 180.02562 * 13 12 11 25 25 H 1.09001 * 109.46832 * 60.00321 * 13 12 11 26 26 H 1.09001 * 109.47194 * 299.99650 * 14 13 12 27 27 H 0.96704 * 117.00221 * 180.02562 * 17 15 14 28 28 H 1.08992 * 109.47554 * 59.99639 * 18 14 13 29 29 H 1.09004 * 109.47108 * 179.97438 * 18 14 13 30 30 H 1.09002 * 109.47045 * 60.00047 * 19 11 9 31 31 H 1.09001 * 109.47375 * 299.99972 * 19 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 16 3.7665 -1.1940 0.0012 10 8 4.0866 -0.6344 -1.2651 11 6 4.1746 -2.9615 0.0026 12 6 3.4835 -3.6454 -1.1789 13 6 3.8282 -5.1361 -1.1781 14 6 5.3432 -5.3093 -1.3034 15 6 5.6828 -6.7775 -1.3021 16 8 4.8033 -7.6009 -1.2098 17 8 6.9622 -7.1706 -1.4033 18 6 6.0342 -4.6255 -0.1220 19 6 5.6895 -3.1353 -0.1225 20 1 -0.4850 0.8400 -0.0004 21 1 3.8328 -3.4126 0.9341 22 1 3.8253 -3.1942 -2.1104 23 1 2.4043 -3.5215 -1.0898 24 1 3.3363 -5.6232 -2.0201 25 1 3.4867 -5.5874 -0.2466 26 1 5.6847 -4.8579 -2.2350 27 1 7.1307 -8.1228 -1.3984 28 1 5.6927 -5.0768 0.8095 29 1 7.1135 -4.7493 -0.2111 30 1 6.1818 -2.6481 0.7192 31 1 6.0313 -2.6842 -1.0541 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720422643.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:41:17 Heat of formation + Delta-G solvation = -186.042921 kcal Electronic energy + Delta-G solvation = -16171.639275 eV Core-core repulsion = 13349.376991 eV Total energy + Delta-G solvation = -2822.262284 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.076 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.54657 -38.88383 -37.10397 -35.93869 -34.87649 -32.33834 -31.79406 -28.09308 -25.58061 -23.71233 -22.21646 -20.77005 -19.89079 -19.01239 -17.77457 -17.74107 -17.20505 -16.87390 -15.95466 -15.37967 -15.19275 -14.88415 -14.60025 -14.51465 -13.97396 -13.41249 -13.33105 -13.19330 -13.02960 -12.75405 -12.60980 -12.50759 -12.14509 -12.07633 -11.80117 -11.48976 -11.41137 -11.13640 -11.11731 -10.24435 -8.85833 -8.61024 -6.94376 1.13278 1.16509 1.28032 1.39108 1.74243 2.09544 2.12713 2.72445 2.85694 3.55964 3.62314 3.79597 4.02851 4.16898 4.23729 4.36434 4.47511 4.51921 4.60314 4.78494 4.95309 5.05714 5.07241 5.15651 5.25672 5.29965 5.45929 5.59308 5.62535 6.24079 6.87341 6.98884 8.49572 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.051702 B = 0.006054 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.432114 B = 4624.042382 C = 4975.954446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.076 3.924 3 Si 0.892 3.108 4 H -0.291 1.291 5 H -0.246 1.246 6 H -0.197 1.197 7 C -0.833 4.833 8 H 0.063 0.937 9 S 1.330 4.670 10 O -0.967 6.967 11 C -0.409 4.409 12 C -0.099 4.099 13 C -0.091 4.091 14 C -0.081 4.081 15 C 0.495 3.505 16 O -0.552 6.552 17 O -0.505 6.505 18 C -0.095 4.095 19 C -0.093 4.093 20 H 0.279 0.721 21 H 0.131 0.869 22 H 0.039 0.961 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.427 0.573 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.780 -8.711 4.584 18.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.134 4.134 3 Si 0.713 3.287 4 H -0.217 1.217 5 H -0.170 1.170 6 H -0.119 1.119 7 C -0.973 4.973 8 H 0.081 0.919 9 S 1.535 4.465 10 O -0.962 6.962 11 C -0.526 4.526 12 C -0.138 4.138 13 C -0.130 4.130 14 C -0.100 4.100 15 C 0.339 3.661 16 O -0.443 6.443 17 O -0.318 6.318 18 C -0.133 4.133 19 C -0.132 4.132 20 H 0.089 0.911 21 H 0.149 0.851 22 H 0.058 0.942 23 H 0.062 0.938 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.289 0.711 28 H 0.099 0.901 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.946 -7.632 4.608 18.269 hybrid contribution -1.824 -1.177 -2.305 3.166 sum 14.122 -8.809 2.302 16.803 Atomic orbital electron populations 1.70107 1.08472 1.29596 1.44977 1.25582 0.95293 1.02820 0.89686 0.86413 0.82308 0.80253 0.79758 1.21709 1.16998 1.11923 1.27910 1.11298 0.98007 1.60057 0.91864 1.67896 0.86476 0.85848 1.06313 1.92752 1.83497 1.70917 1.49023 1.27533 1.01879 1.20078 1.03117 1.21345 0.99398 0.95463 0.97554 1.21331 0.93715 0.95345 1.02602 1.21110 0.97085 0.87880 1.03918 1.23533 0.80020 0.92376 0.70206 1.90707 1.50078 1.56084 1.47468 1.84503 1.28058 1.34891 1.84385 1.21490 1.01257 0.94502 0.96083 1.21273 0.91364 0.96887 1.03629 0.91111 0.85114 0.94187 0.93848 0.92642 0.91032 0.87092 0.71122 0.90114 0.88029 0.86995 0.92817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.97 13.96 21.45 0.30 -53.67 16 2 C 0.08 4.31 5.47 84.66 0.46 4.77 16 3 Si 0.89 41.59 26.71 68.60 1.83 43.42 16 4 H -0.29 -14.99 7.11 99.48 0.71 -14.28 16 5 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.20 -7.59 6.72 99.48 0.67 -6.92 16 7 C -0.83 -45.94 9.29 67.73 0.63 -45.31 16 8 H 0.06 3.80 6.91 -2.91 -0.02 3.78 16 9 S 1.33 56.54 11.10 -56.49 -0.63 55.91 16 10 O -0.97 -51.83 16.34 -148.98 -2.43 -54.26 16 11 C -0.41 -13.69 2.69 30.60 0.08 -13.60 16 12 C -0.10 -3.83 4.94 30.60 0.15 -3.68 16 13 C -0.09 -2.86 4.49 30.59 0.14 -2.72 16 14 C -0.08 -2.00 2.63 -11.54 -0.03 -2.03 16 15 C 0.49 11.69 7.62 71.24 0.54 12.23 16 16 O -0.55 -16.90 16.74 21.97 0.37 -16.53 16 17 O -0.51 -8.11 13.33 -51.38 -0.68 -8.80 16 18 C -0.09 -1.93 5.13 30.58 0.16 -1.78 16 19 C -0.09 -2.33 5.21 30.58 0.16 -2.17 16 20 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 21 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 22 H 0.04 1.69 8.10 -2.39 -0.02 1.67 16 23 H 0.04 1.96 6.51 -2.39 -0.02 1.94 16 24 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 25 H 0.07 2.22 8.10 -2.39 -0.02 2.20 16 26 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 27 H 0.43 3.09 9.10 -74.05 -0.67 2.42 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.10 1.58 8.11 -2.38 -0.02 1.56 16 30 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -79.12 270.54 1.47 -77.65 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 0.43 Total: 10.56 kcal Atomic # 6 Polarization: -56.57 SS G_CDS: 2.29 Total: -54.28 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: 0.30 Total: -53.67 kcal Atomic # 8 Polarization: -76.84 SS G_CDS: -2.75 Total: -79.59 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.83 Total: 43.42 kcal Atomic # 16 Polarization: 56.54 SS G_CDS: -0.63 Total: 55.91 kcal Total: -79.12 1.47 -77.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720422643.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.397 kcal (2) G-P(sol) polarization free energy of solvation -79.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -186.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds