Wall clock time and date at job start Mon Mar 30 2020 03:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00099 * 2 1 4 4 H 1.48498 * 109.47049 * 239.99725 * 3 2 1 5 5 H 1.48492 * 109.47263 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47132 * 119.99727 * 3 2 1 7 7 C 1.37884 * 119.99872 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99707 * 180.02562 * 7 2 1 9 9 S 1.76204 * 119.99686 * 0.02562 * 7 2 1 10 10 O 1.42091 * 106.40439 * 66.45790 * 9 7 2 11 11 O 1.42099 * 106.40124 * 293.53604 * 9 7 2 12 12 N 1.65600 * 107.21346 * 180.02562 * 9 7 2 13 13 C 1.48654 * 128.38240 * 269.96831 * 12 9 7 14 14 H 1.08993 * 113.11896 * 345.05995 * 13 12 9 15 15 C 1.57343 * 103.63882 * 222.38163 * 13 12 9 16 16 C 1.54339 * 104.47745 * 334.53446 * 15 13 12 17 17 C 1.48438 * 128.45414 * 90.00082 * 12 9 7 18 18 H 1.09007 * 112.41164 * 14.64586 * 17 12 9 19 19 C 1.53764 * 106.97455 * 250.93869 * 17 12 9 20 20 N 1.46971 * 108.95241 * 296.46655 * 19 17 12 21 21 C 1.46965 * 111.61405 * 55.21457 * 20 19 17 22 22 H 0.97001 * 119.99347 * 0.02562 * 1 2 3 23 23 H 1.09007 * 110.75748 * 215.65653 * 15 13 12 24 24 H 1.09008 * 110.20439 * 93.13543 * 15 13 12 25 25 H 1.09003 * 110.40983 * 240.88813 * 16 15 13 26 26 H 1.09005 * 110.50836 * 118.51633 * 16 15 13 27 27 H 1.08998 * 109.55918 * 176.62794 * 19 17 12 28 28 H 1.08996 * 109.55747 * 56.30908 * 19 17 12 29 29 H 1.00900 * 110.99476 * 179.61238 * 20 19 17 30 30 H 1.09002 * 109.55942 * 64.63077 * 21 20 19 31 31 H 1.08997 * 109.55578 * 184.84083 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 16 1.1234 -2.7200 0.0005 10 8 0.4518 -2.7956 -1.2493 11 8 0.4509 -2.7950 1.2501 12 7 2.2482 -3.9354 0.0019 13 6 2.8755 -4.6138 -1.1625 14 1 2.3510 -4.4279 -2.0997 15 6 2.8768 -6.1324 -0.7508 16 6 2.8702 -6.1138 0.7924 17 6 2.8743 -4.6124 1.1652 18 1 2.3435 -4.4144 2.0964 19 6 4.3395 -4.1492 1.2190 20 7 5.0292 -4.6054 0.0040 21 6 4.3410 -4.1506 -1.2123 22 1 -0.4849 0.8401 -0.0004 23 1 3.7719 -6.6324 -1.1211 24 1 1.9811 -6.6257 -1.1287 25 1 3.7621 -6.6045 1.1823 26 1 1.9725 -6.5983 1.1764 27 1 4.8252 -4.5763 2.0963 28 1 4.3765 -3.0613 1.2729 29 1 5.9946 -4.3117 0.0044 30 1 4.3781 -3.0626 -1.2674 31 1 4.8289 -4.5772 -2.0887 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000723866558.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:53:45 Heat of formation + Delta-G solvation = -107.269390 kcal Electronic energy + Delta-G solvation = -17233.196463 eV Core-core repulsion = 14446.642807 eV Total energy + Delta-G solvation = -2786.553656 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85989 -37.47998 -36.21133 -35.28086 -34.51405 -32.13994 -31.47445 -28.31694 -25.68344 -25.20721 -21.72230 -21.43053 -20.26819 -19.13803 -18.49166 -17.35270 -16.96377 -16.26799 -15.95768 -15.57478 -14.92172 -14.72047 -14.67783 -14.16742 -14.05398 -13.52831 -13.37023 -13.16059 -13.06536 -12.59963 -12.52478 -12.38139 -12.16163 -12.12186 -11.91179 -11.56007 -11.30176 -11.16493 -11.02634 -9.86413 -9.30690 -8.80194 -7.55297 0.21836 1.27274 1.29723 1.43119 2.14581 2.51071 2.83491 3.32071 3.68436 3.78435 3.81465 4.07681 4.09852 4.31928 4.40159 4.42592 4.69889 4.78164 4.83997 4.85532 4.99698 5.07161 5.16497 5.17752 5.30531 5.48277 5.52769 5.82219 5.85099 6.03087 6.61004 6.70834 8.14991 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.031576 B = 0.009971 C = 0.008865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.532606 B = 2807.487050 C = 3157.627557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.068 3.932 3 Si 0.991 3.009 4 H -0.250 1.250 5 H -0.261 1.261 6 H -0.250 1.250 7 C -1.037 5.037 8 H 0.112 0.888 9 S 2.735 3.265 10 O -1.043 7.043 11 O -1.043 7.043 12 N -1.027 6.027 13 C 0.128 3.872 14 H 0.090 0.910 15 C -0.101 4.101 16 C -0.105 4.105 17 C 0.131 3.869 18 H 0.086 0.914 19 C 0.049 3.951 20 N -0.665 5.665 21 C 0.049 3.951 22 H 0.300 0.700 23 H 0.107 0.893 24 H 0.057 0.943 25 H 0.107 0.893 26 H 0.057 0.943 27 H 0.112 0.888 28 H 0.016 0.984 29 H 0.354 0.646 30 H 0.016 0.984 31 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.585 -8.522 0.007 15.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.144 4.144 3 Si 0.809 3.191 4 H -0.174 1.174 5 H -0.185 1.185 6 H -0.174 1.174 7 C -1.171 5.171 8 H 0.130 0.870 9 S 2.839 3.161 10 O -1.033 7.033 11 O -1.033 7.033 12 N -0.865 5.865 13 C 0.022 3.978 14 H 0.108 0.892 15 C -0.140 4.140 16 C -0.144 4.144 17 C 0.025 3.975 18 H 0.104 0.896 19 C -0.082 4.082 20 N -0.298 5.298 21 C -0.082 4.082 22 H 0.110 0.890 23 H 0.125 0.875 24 H 0.076 0.924 25 H 0.125 0.875 26 H 0.076 0.924 27 H 0.130 0.870 28 H 0.034 0.966 29 H 0.174 0.826 30 H 0.034 0.966 31 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 11.037 -9.102 0.009 14.306 hybrid contribution 0.392 2.415 0.003 2.446 sum 11.429 -6.687 0.012 13.242 Atomic orbital electron populations 1.69987 1.08793 1.32489 1.41329 1.26068 0.95427 1.05419 0.87519 0.85152 0.78819 0.74446 0.80686 1.17415 1.18451 1.17408 1.30926 1.06655 1.12700 1.66782 0.86958 0.99386 0.72154 0.73288 0.71295 1.93281 1.74483 1.88394 1.47152 1.93281 1.74474 1.88394 1.47184 1.59601 1.60148 1.52058 1.14692 1.22868 0.92508 0.93722 0.88713 0.89238 1.22819 1.02631 0.92841 0.95744 1.22387 1.02733 0.93075 0.96198 1.22298 0.92638 0.93881 0.88661 0.89592 1.22452 0.93966 0.97192 0.94617 1.60317 1.05914 1.63032 1.00493 1.22435 0.94028 0.97175 0.94579 0.88986 0.87493 0.92422 0.87470 0.92387 0.86982 0.96591 0.82629 0.96602 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.78 13.19 21.45 0.28 -54.50 16 2 C 0.07 3.91 5.46 84.66 0.46 4.37 16 3 Si 0.99 42.08 29.54 68.60 2.03 44.11 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 6 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 7 C -1.04 -59.12 9.75 67.74 0.66 -58.46 16 8 H 0.11 5.84 7.81 -2.91 -0.02 5.82 16 9 S 2.73 155.17 5.33 -56.49 -0.30 154.87 16 10 O -1.04 -65.27 17.58 -128.00 -2.25 -67.52 16 11 O -1.04 -65.32 17.55 -128.00 -2.25 -67.57 16 12 N -1.03 -43.59 3.20 -448.97 -1.44 -45.03 16 13 C 0.13 4.35 4.44 46.37 0.21 4.55 16 14 H 0.09 3.24 7.93 -2.39 -0.02 3.23 16 15 C -0.10 -2.65 6.22 32.58 0.20 -2.45 16 16 C -0.10 -2.76 6.15 31.63 0.19 -2.56 16 17 C 0.13 4.47 4.27 45.45 0.19 4.66 16 18 H 0.09 3.14 7.88 -2.38 -0.02 3.12 16 19 C 0.05 1.34 6.16 86.55 0.53 1.88 16 20 N -0.67 -15.33 5.83 -510.78 -2.98 -18.31 16 21 C 0.05 1.34 6.19 86.55 0.54 1.88 16 22 H 0.30 16.46 8.31 -92.71 -0.77 15.68 16 23 H 0.11 2.19 7.85 -2.38 -0.02 2.17 16 24 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.11 2.20 7.82 -2.39 -0.02 2.18 16 26 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 28 H 0.02 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.35 6.39 8.90 -89.69 -0.80 5.59 16 30 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -78.25 267.53 -3.57 -81.82 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: 0.34 Total: 18.25 kcal Atomic # 6 Polarization: -49.13 SS G_CDS: 2.99 Total: -46.14 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -4.13 Total: -117.83 kcal Atomic # 8 Polarization: -130.59 SS G_CDS: -4.50 Total: -135.09 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 16 Polarization: 155.17 SS G_CDS: -0.30 Total: 154.87 kcal Total: -78.25 -3.57 -81.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000723866558.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.445 kcal (2) G-P(sol) polarization free energy of solvation -78.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds