Wall clock time and date at job start Mon Mar 30 2020 03:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99735 * 2 1 4 4 H 1.48501 * 109.47384 * 270.00196 * 3 2 1 5 5 H 1.48493 * 109.47149 * 30.00623 * 3 2 1 6 6 H 1.48503 * 109.47057 * 150.00334 * 3 2 1 7 7 C 1.37881 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99869 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99895 * 179.97438 * 7 2 1 10 10 O 1.42101 * 106.40300 * 66.45591 * 9 7 2 11 11 O 1.42105 * 106.40223 * 293.53736 * 9 7 2 12 12 N 1.65597 * 107.21699 * 180.02562 * 9 7 2 13 13 C 1.47794 * 134.39538 * 90.00399 * 12 9 7 14 14 C 1.52876 * 85.77281 * 156.13922 * 13 12 9 15 15 C 1.47795 * 134.39348 * 269.99735 * 12 9 7 16 16 C 1.53607 * 115.54286 * 265.89197 * 14 13 12 17 17 C 1.55177 * 102.62300 * 208.58659 * 16 14 13 18 18 N 1.48622 * 103.38288 * 36.54399 * 17 16 14 19 19 C 1.48199 * 105.88046 * 321.38488 * 18 17 16 20 20 H 0.96995 * 120.00560 * 359.97438 * 1 2 3 21 21 H 1.08992 * 113.82474 * 41.92643 * 13 12 9 22 22 H 1.09002 * 113.81612 * 270.35193 * 13 12 9 23 23 H 1.08992 * 113.82033 * 89.64769 * 15 12 9 24 24 H 1.08998 * 113.93135 * 318.08365 * 15 12 9 25 25 H 1.09003 * 110.78172 * 326.86679 * 16 14 13 26 26 H 1.08996 * 110.78221 * 90.30234 * 16 14 13 27 27 H 1.09003 * 110.63673 * 278.07105 * 17 16 14 28 28 H 1.09003 * 110.63668 * 155.01714 * 17 16 14 29 29 H 1.00905 * 111.00278 * 81.93742 * 18 17 16 30 30 H 1.09001 * 110.02739 * 265.83512 * 19 18 17 31 31 H 1.09005 * 110.02744 * 144.41498 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1940 -0.0012 10 8 4.1683 -0.6497 1.2484 11 8 4.1673 -0.6493 -1.2510 12 7 4.2568 -2.7757 -0.0025 13 6 4.5625 -3.7626 -1.0593 14 6 5.4235 -4.4571 -0.0041 15 6 4.5633 -3.7640 1.0528 16 6 6.9105 -4.0716 -0.0041 17 6 7.5927 -5.3520 0.5465 18 7 6.7846 -6.4522 -0.0411 19 6 5.3782 -5.9865 -0.0046 20 1 -0.4851 0.8400 0.0004 21 1 5.1329 -3.3528 -1.8927 22 1 3.6998 -4.3476 -1.3782 23 1 3.7009 -4.3494 1.3716 24 1 5.1341 -3.3570 1.8874 25 1 7.2538 -3.8550 -1.0156 26 1 7.0900 -3.2233 0.6563 27 1 7.5415 -5.3768 1.6351 28 1 8.6271 -5.4119 0.2080 29 1 7.0758 -6.6494 -0.9869 30 1 4.8894 -6.3458 0.9010 31 1 4.8436 -6.3439 -0.8848 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724057897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:10 Heat of formation + Delta-G solvation = -38.649425 kcal Electronic energy + Delta-G solvation = -16586.351717 eV Core-core repulsion = 13802.773646 eV Total energy + Delta-G solvation = -2783.578071 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.21371 -36.11018 -35.61282 -34.43499 -33.03181 -29.37849 -28.78314 -26.38712 -26.06436 -23.91412 -21.93049 -18.77588 -18.54577 -17.41325 -16.72523 -16.52027 -15.50565 -15.01375 -14.83674 -14.16155 -13.93834 -13.40543 -13.31106 -12.88300 -12.76178 -12.37411 -12.01055 -11.75417 -11.42598 -11.35111 -11.04425 -10.93098 -10.65643 -10.58739 -10.48322 -10.23000 -9.80631 -9.22285 -9.18796 -8.71780 -8.29113 -6.81336 -5.34393 1.94697 3.05293 3.15929 3.24839 3.93523 3.99601 4.22702 4.34975 4.57374 4.59277 4.99588 5.06087 5.27107 5.40227 5.40848 5.48541 5.53172 5.73911 5.77505 5.80476 5.88835 5.94070 5.96037 6.08116 6.32232 6.60072 6.94756 6.99788 7.23114 7.48776 8.20753 8.69857 10.31381 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.052519 B = 0.007106 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.011548 B = 3939.157141 C = 4139.794143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.152 3.848 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.254 1.254 6 H -0.220 1.220 7 C -1.019 5.019 8 H 0.119 0.881 9 S 2.691 3.309 10 O -1.003 7.003 11 O -1.006 7.006 12 N -1.032 6.032 13 C 0.141 3.859 14 C -0.125 4.125 15 C 0.144 3.856 16 C -0.135 4.135 17 C 0.043 3.957 18 N -0.677 5.677 19 C 0.054 3.946 20 H 0.281 0.719 21 H 0.078 0.922 22 H 0.080 0.920 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.073 0.927 29 H 0.335 0.665 30 H 0.083 0.917 31 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.767 -10.463 -0.448 15.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.067 4.067 3 Si 0.621 3.379 4 H -0.170 1.170 5 H -0.178 1.178 6 H -0.142 1.142 7 C -1.153 5.153 8 H 0.137 0.863 9 S 2.796 3.204 10 O -0.994 6.994 11 O -0.997 6.997 12 N -0.868 5.868 13 C 0.014 3.986 14 C -0.128 4.128 15 C 0.017 3.983 16 C -0.174 4.174 17 C -0.086 4.086 18 N -0.303 5.303 19 C -0.076 4.076 20 H 0.091 0.909 21 H 0.097 0.903 22 H 0.098 0.902 23 H 0.099 0.901 24 H 0.098 0.902 25 H 0.091 0.909 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.150 0.850 30 H 0.101 0.899 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.089 -9.862 0.157 14.841 hybrid contribution -0.790 1.318 -0.754 1.711 sum 10.300 -8.544 -0.597 13.395 Atomic orbital electron populations 1.69988 1.06591 1.29029 1.39747 1.24453 0.94807 0.98838 0.88644 0.87867 0.83604 0.84541 0.81838 1.17002 1.17783 1.14229 1.30626 1.16094 1.02045 1.66511 0.86290 1.00921 0.76834 0.69545 0.73135 1.93454 1.85386 1.75254 1.45288 1.93397 1.85408 1.75407 1.45484 1.60341 1.85202 1.26969 1.14309 1.22545 0.96724 0.87903 0.91395 1.23119 0.95747 0.95623 0.98350 1.22506 0.96700 0.87693 0.91362 1.22816 0.92912 0.99444 1.02220 1.23177 0.96756 0.88123 1.00583 1.62816 1.02895 1.39616 1.24966 1.22649 0.90583 0.91594 1.02799 0.90911 0.90337 0.90184 0.90123 0.90193 0.90861 0.90233 0.90052 0.90851 0.84967 0.89875 0.90935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.28 13.96 55.43 0.77 -23.51 16 2 C 0.15 4.47 5.47 -17.82 -0.10 4.37 16 3 Si 0.80 21.00 26.54 -169.99 -4.51 16.49 16 4 H -0.25 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.25 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.22 -5.87 5.61 56.52 0.32 -5.55 16 7 C -1.02 -29.25 10.29 30.60 0.31 -28.93 16 8 H 0.12 3.46 8.06 -52.49 -0.42 3.03 16 9 S 2.69 69.30 4.73 -107.50 -0.51 68.79 16 10 O -1.00 -27.59 15.99 -57.17 -0.91 -28.51 16 11 O -1.01 -27.59 16.80 -57.17 -0.96 -28.55 16 12 N -1.03 -20.37 4.11 -123.74 -0.51 -20.88 16 13 C 0.14 2.16 8.16 -3.40 -0.03 2.14 16 14 C -0.12 -1.60 1.15 -154.48 -0.18 -1.77 16 15 C 0.14 2.24 8.09 -3.39 -0.03 2.21 16 16 C -0.13 -1.58 6.44 -25.26 -0.16 -1.75 16 17 C 0.04 0.42 7.56 -1.72 -0.01 0.40 16 18 N -0.68 -6.63 7.53 -110.20 -0.83 -7.46 16 19 C 0.05 0.56 7.08 -3.10 -0.02 0.54 16 20 H 0.28 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.08 1.18 8.04 -51.93 -0.42 0.76 16 22 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 23 H 0.08 1.13 8.13 -51.93 -0.42 0.71 16 24 H 0.08 1.22 8.00 -51.93 -0.42 0.80 16 25 H 0.07 0.82 8.04 -51.93 -0.42 0.41 16 26 H 0.08 1.03 7.88 -51.93 -0.41 0.62 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.34 2.78 8.92 -39.29 -0.35 2.43 16 30 H 0.08 0.86 7.94 -51.93 -0.41 0.45 16 31 H 0.07 0.67 7.91 -51.93 -0.41 0.26 16 LS Contribution 269.33 15.07 4.06 4.06 Total: -1.00 -33.87 269.33 -7.78 -41.65 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.16 Total: 0.71 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -0.21 Total: -22.79 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.56 Total: -51.84 kcal Atomic # 8 Polarization: -55.18 SS G_CDS: -1.87 Total: -57.06 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.51 Total: 16.49 kcal Atomic # 16 Polarization: 69.30 SS G_CDS: -0.51 Total: 68.79 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.87 -7.78 -41.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724057897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.998 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds