Wall clock time and date at job start Mon Mar 30 2020 03:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99735 * 2 1 4 4 H 1.48501 * 109.47384 * 270.00196 * 3 2 1 5 5 H 1.48493 * 109.47149 * 30.00623 * 3 2 1 6 6 H 1.48503 * 109.47057 * 150.00334 * 3 2 1 7 7 C 1.37881 * 120.00164 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99869 * 359.97438 * 7 2 1 9 9 S 1.76199 * 119.99895 * 179.97438 * 7 2 1 10 10 O 1.42101 * 106.40300 * 66.45591 * 9 7 2 11 11 O 1.42105 * 106.40223 * 293.53736 * 9 7 2 12 12 N 1.65597 * 107.21699 * 180.02562 * 9 7 2 13 13 C 1.47794 * 134.39538 * 90.00399 * 12 9 7 14 14 C 1.52876 * 85.77281 * 156.13922 * 13 12 9 15 15 C 1.47795 * 134.39348 * 269.99735 * 12 9 7 16 16 C 1.53607 * 115.54286 * 265.89197 * 14 13 12 17 17 C 1.55177 * 102.62300 * 208.58659 * 16 14 13 18 18 N 1.48622 * 103.38288 * 36.54399 * 17 16 14 19 19 C 1.48199 * 105.88046 * 321.38488 * 18 17 16 20 20 H 0.96995 * 120.00560 * 359.97438 * 1 2 3 21 21 H 1.08992 * 113.82474 * 41.92643 * 13 12 9 22 22 H 1.09002 * 113.81612 * 270.35193 * 13 12 9 23 23 H 1.08992 * 113.82033 * 89.64769 * 15 12 9 24 24 H 1.08998 * 113.93135 * 318.08365 * 15 12 9 25 25 H 1.09003 * 110.78172 * 326.86679 * 16 14 13 26 26 H 1.08996 * 110.78221 * 90.30234 * 16 14 13 27 27 H 1.09003 * 110.63673 * 278.07105 * 17 16 14 28 28 H 1.09003 * 110.63668 * 155.01714 * 17 16 14 29 29 H 1.00905 * 111.00278 * 81.93742 * 18 17 16 30 30 H 1.09001 * 110.02739 * 265.83512 * 19 18 17 31 31 H 1.09005 * 110.02744 * 144.41498 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 16 3.7665 -1.1940 -0.0012 10 8 4.1683 -0.6497 1.2484 11 8 4.1673 -0.6493 -1.2510 12 7 4.2568 -2.7757 -0.0025 13 6 4.5625 -3.7626 -1.0593 14 6 5.4235 -4.4571 -0.0041 15 6 4.5633 -3.7640 1.0528 16 6 6.9105 -4.0716 -0.0041 17 6 7.5927 -5.3520 0.5465 18 7 6.7846 -6.4522 -0.0411 19 6 5.3782 -5.9865 -0.0046 20 1 -0.4851 0.8400 0.0004 21 1 5.1329 -3.3528 -1.8927 22 1 3.6998 -4.3476 -1.3782 23 1 3.7009 -4.3494 1.3716 24 1 5.1341 -3.3570 1.8874 25 1 7.2538 -3.8550 -1.0156 26 1 7.0900 -3.2233 0.6563 27 1 7.5415 -5.3768 1.6351 28 1 8.6271 -5.4119 0.2080 29 1 7.0758 -6.6494 -0.9869 30 1 4.8894 -6.3458 0.9010 31 1 4.8436 -6.3439 -0.8848 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724057897.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:56:09 Heat of formation + Delta-G solvation = -67.900620 kcal Electronic energy + Delta-G solvation = -16587.620144 eV Core-core repulsion = 13802.773646 eV Total energy + Delta-G solvation = -2784.846498 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 246.082 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32766 -37.71546 -37.14801 -36.54255 -35.24052 -30.31791 -29.87300 -28.59497 -27.31539 -25.13536 -22.74220 -20.73556 -19.72325 -19.23610 -18.59871 -17.46375 -17.27685 -16.70548 -16.23938 -15.61140 -15.33263 -15.04408 -14.84321 -14.74837 -14.05018 -13.65819 -13.48299 -13.17699 -12.97554 -12.80170 -12.77468 -12.64296 -12.38644 -12.08295 -11.87006 -11.53548 -11.38950 -11.32355 -11.25691 -9.88363 -9.48397 -9.02588 -7.58207 0.02806 0.98800 1.08233 1.15436 1.83423 2.34053 2.36671 3.25240 3.31141 3.33728 3.68270 3.82006 3.85733 4.18251 4.39224 4.46767 4.57904 4.61542 4.64200 4.74669 4.82348 5.01548 5.10622 5.23299 5.24927 5.28663 5.31329 5.60918 5.83234 5.96289 6.47707 6.56195 8.15670 Molecular weight = 246.08amu Principal moments of inertia in cm(-1) A = 0.052519 B = 0.007106 C = 0.006762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.011548 B = 3939.157141 C = 4139.794143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.105 3.895 3 Si 0.826 3.174 4 H -0.238 1.238 5 H -0.215 1.215 6 H -0.231 1.231 7 C -1.044 5.044 8 H 0.101 0.899 9 S 2.710 3.290 10 O -1.027 7.027 11 O -1.028 7.028 12 N -1.042 6.042 13 C 0.131 3.869 14 C -0.104 4.104 15 C 0.132 3.868 16 C -0.140 4.140 17 C 0.050 3.950 18 N -0.677 5.677 19 C 0.061 3.939 20 H 0.292 0.708 21 H 0.081 0.919 22 H 0.098 0.902 23 H 0.097 0.903 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.346 0.654 30 H 0.087 0.913 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.055 -11.646 -0.623 16.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.111 4.111 3 Si 0.642 3.358 4 H -0.161 1.161 5 H -0.137 1.137 6 H -0.153 1.153 7 C -1.176 5.176 8 H 0.119 0.881 9 S 2.813 3.187 10 O -1.017 7.017 11 O -1.018 7.018 12 N -0.882 5.882 13 C 0.006 3.994 14 C -0.109 4.109 15 C 0.007 3.993 16 C -0.179 4.179 17 C -0.079 4.079 18 N -0.304 5.304 19 C -0.070 4.070 20 H 0.102 0.898 21 H 0.099 0.901 22 H 0.116 0.884 23 H 0.115 0.885 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.082 0.918 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.163 0.837 30 H 0.106 0.894 31 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.341 -11.033 -0.022 16.554 hybrid contribution -1.172 1.533 -0.705 2.054 sum 11.169 -9.500 -0.727 14.681 Atomic orbital electron populations 1.70010 1.07454 1.30541 1.40467 1.25224 0.95703 1.01574 0.88599 0.87485 0.82849 0.82761 0.82671 1.16149 1.13740 1.15330 1.31208 1.18709 1.01452 1.66251 0.88052 1.00059 0.75212 0.71243 0.72137 1.93410 1.85069 1.77201 1.46034 1.93353 1.85080 1.77292 1.46124 1.60094 1.84114 1.26318 1.17721 1.22985 0.98084 0.86907 0.91445 1.22963 0.95467 0.97201 0.95240 1.22932 0.98047 0.86817 0.91500 1.22891 0.92470 1.00097 1.02488 1.23156 0.97575 0.86672 1.00493 1.62811 1.02454 1.39229 1.25907 1.22617 0.91350 0.89128 1.03898 0.89771 0.90061 0.88415 0.88533 0.90208 0.90210 0.91759 0.90180 0.88913 0.83742 0.89446 0.89252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -50.75 13.96 21.45 0.30 -50.45 16 2 C 0.11 6.26 5.47 84.66 0.46 6.72 16 3 Si 0.83 42.28 26.54 68.60 1.82 44.10 16 4 H -0.24 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.22 -9.63 7.11 99.48 0.71 -8.93 16 6 H -0.23 -12.19 5.61 99.48 0.56 -11.63 16 7 C -1.04 -61.08 10.29 67.74 0.70 -60.38 16 8 H 0.10 6.07 8.06 -2.91 -0.02 6.05 16 9 S 2.71 140.31 4.73 -56.49 -0.27 140.05 16 10 O -1.03 -56.84 15.99 -128.00 -2.05 -58.89 16 11 O -1.03 -56.47 16.80 -128.00 -2.15 -58.62 16 12 N -1.04 -40.51 4.11 -545.41 -2.24 -42.75 16 13 C 0.13 3.80 8.16 86.09 0.70 4.50 16 14 C -0.10 -2.43 1.15 -52.00 -0.06 -2.49 16 15 C 0.13 3.94 8.09 86.09 0.70 4.63 16 16 C -0.14 -3.00 6.44 31.54 0.20 -2.79 16 17 C 0.05 0.82 7.56 86.72 0.66 1.48 16 18 N -0.68 -10.88 7.53 -502.58 -3.78 -14.66 16 19 C 0.06 1.06 7.08 86.05 0.61 1.67 16 20 H 0.29 15.54 8.31 -92.71 -0.77 14.77 16 21 H 0.08 2.31 8.04 -2.39 -0.02 2.29 16 22 H 0.10 2.47 8.10 -2.39 -0.02 2.46 16 23 H 0.10 2.55 8.13 -2.39 -0.02 2.53 16 24 H 0.08 2.36 8.00 -2.39 -0.02 2.34 16 25 H 0.08 1.61 8.04 -2.39 -0.02 1.59 16 26 H 0.06 1.58 7.88 -2.39 -0.02 1.56 16 27 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.35 4.44 8.92 -89.69 -0.80 3.64 16 30 H 0.09 1.51 7.94 -2.39 -0.02 1.49 16 31 H 0.09 1.30 7.91 -2.38 -0.02 1.28 16 Total: -1.00 -72.83 269.33 -4.22 -77.05 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.19 Total: 10.84 kcal Atomic # 6 Polarization: -50.63 SS G_CDS: 3.97 Total: -46.66 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -5.73 Total: -107.86 kcal Atomic # 8 Polarization: -113.31 SS G_CDS: -4.20 Total: -117.51 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.82 Total: 44.10 kcal Atomic # 16 Polarization: 140.31 SS G_CDS: -0.27 Total: 140.05 kcal Total: -72.83 -4.22 -77.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724057897.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.146 kcal (2) G-P(sol) polarization free energy of solvation -72.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds