Wall clock time and date at job start Mon Mar 30 2020 03:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47290 * 2 1 4 4 N 1.27947 * 120.00127 * 125.00059 * 3 2 1 5 5 Si 1.86798 * 120.00197 * 304.99962 * 3 2 1 6 6 H 1.48506 * 109.47297 * 89.99935 * 5 3 2 7 7 H 1.48503 * 109.47261 * 330.00116 * 5 3 2 8 8 H 1.48500 * 109.47454 * 210.00109 * 5 3 2 9 9 S 1.81398 * 109.46820 * 120.00101 * 2 1 3 10 10 O 1.52201 * 108.33468 * 302.20983 * 9 2 1 11 11 O 1.42106 * 114.64719 * 181.10290 * 9 2 1 12 12 N 1.65598 * 108.33506 * 60.00003 * 9 2 1 13 13 N 1.23351 * 122.73421 * 359.70282 * 12 9 2 14 14 C 1.47289 * 107.74582 * 179.86587 * 13 12 9 15 15 H 1.09000 * 111.04153 * 241.84243 * 14 13 12 16 16 N 1.46899 * 110.52857 * 118.66665 * 14 13 12 17 17 C 1.51843 * 102.98924 * 0.37324 * 14 13 12 18 18 C 1.33474 * 103.92824 * 359.78806 * 17 14 13 19 19 C 1.50705 * 124.59539 * 180.02562 * 18 17 14 20 20 H 1.09000 * 109.46800 * 300.00320 * 1 2 3 21 21 H 1.09001 * 109.47068 * 59.99316 * 1 2 3 22 22 H 1.08998 * 109.47668 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46800 * 239.99680 * 2 1 3 24 24 H 0.97001 * 119.99590 * 359.97438 * 4 3 2 25 25 H 0.96691 * 113.99978 * 55.06696 * 10 9 2 26 26 H 1.00891 * 111.00244 * 66.53397 * 16 14 13 27 27 H 1.00902 * 110.99793 * 190.49069 * 16 14 13 28 28 H 1.08005 * 128.03677 * 179.81452 * 17 14 13 29 29 H 1.08992 * 109.47082 * 269.97757 * 19 18 17 30 30 H 1.08997 * 109.47065 * 29.98119 * 19 18 17 31 31 H 1.09006 * 109.46628 * 149.97827 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.8449 1.8120 0.9076 5 14 1.4690 2.6107 -1.3251 6 1 0.2384 3.3084 -0.8733 7 1 1.1824 1.8608 -2.5745 8 1 2.5382 3.6089 -1.5812 9 16 2.1346 -0.8552 1.4811 10 8 1.5681 -0.1506 2.7055 11 8 3.5497 -0.8978 1.6047 12 7 1.5672 -2.4106 1.4526 13 7 0.8522 -2.8433 0.5454 14 6 0.5459 -4.2518 0.8481 15 1 0.9346 -4.9122 0.0729 16 7 -0.9017 -4.4408 1.0112 17 6 1.2692 -4.4834 2.1630 18 6 1.8450 -3.3079 2.4243 19 6 2.6906 -3.0204 3.6381 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1372 1.1942 1.5960 25 1 0.6041 -0.0761 2.7055 26 1 -1.3867 -4.2879 0.1398 27 1 -1.1072 -5.3557 1.3838 28 1 1.3090 -5.3891 2.7501 29 1 2.0557 -2.6542 4.4448 30 1 3.1918 -3.9344 3.9566 31 1 3.4361 -2.2645 3.3907 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725550929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:37 Heat of formation + Delta-G solvation = 74.875060 kcal Electronic energy + Delta-G solvation = -17646.728389 eV Core-core repulsion = 14788.991459 eV Total energy + Delta-G solvation = -2857.736930 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -43.70764 -38.16661 -37.36328 -36.92142 -35.70568 -34.37872 -32.51500 -30.23955 -27.84998 -24.97811 -23.66283 -22.63916 -21.88152 -20.85714 -19.36690 -18.13994 -17.51201 -16.82308 -16.48663 -16.47160 -16.37185 -15.91188 -15.48518 -15.13615 -14.70725 -14.32912 -14.08590 -13.90093 -13.65472 -13.45623 -13.30821 -13.02978 -12.96291 -12.59494 -12.35355 -12.14913 -11.91361 -11.23673 -10.99601 -10.61121 -10.36712 -10.00754 -7.22401 -1.41635 0.74640 0.99982 1.10653 1.35804 1.68964 1.78549 1.93721 2.10527 2.50226 2.79038 3.11456 3.14886 3.56133 3.62066 3.84721 4.04225 4.11952 4.26703 4.41991 4.42782 4.58536 4.64354 4.76226 4.88329 5.01736 5.03638 5.19154 5.43834 5.65194 5.84996 6.31351 6.95293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.578 4.578 3 C -0.008 4.008 4 N -0.644 5.644 5 Si 1.060 2.940 6 H -0.245 1.245 7 H -0.247 1.247 8 H -0.250 1.250 9 S 1.855 4.145 10 O -0.896 6.896 11 O -0.901 6.901 12 N -0.341 5.341 13 N -0.154 5.154 14 C 0.172 3.828 15 H 0.134 0.866 16 N -0.817 5.817 17 C -0.142 4.142 18 C -0.019 4.019 19 C -0.121 4.121 20 H 0.052 0.948 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.131 0.869 24 H 0.319 0.681 25 H 0.430 0.570 26 H 0.361 0.639 27 H 0.361 0.639 28 H 0.180 0.820 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.129 -8.038 -1.160 10.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.686 4.686 3 C -0.253 4.253 4 N -0.261 5.261 5 Si 0.874 3.126 6 H -0.169 1.169 7 H -0.170 1.170 8 H -0.174 1.174 9 S 1.944 4.056 10 O -0.749 6.749 11 O -0.887 6.887 12 N -0.251 5.251 13 N -0.054 5.054 14 C -0.030 4.030 15 H 0.151 0.849 16 N -0.354 5.354 17 C -0.173 4.173 18 C -0.122 4.122 19 C -0.179 4.179 20 H 0.071 0.929 21 H 0.084 0.916 22 H 0.103 0.897 23 H 0.149 0.851 24 H 0.141 0.859 25 H 0.292 0.708 26 H 0.176 0.824 27 H 0.177 0.823 28 H 0.197 0.803 29 H 0.109 0.891 30 H 0.112 0.888 31 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -5.845 -5.102 -1.026 7.826 hybrid contribution 0.207 -2.295 0.239 2.317 sum -5.637 -7.398 -0.787 9.334 Atomic orbital electron populations 1.21311 0.90410 1.03704 1.02337 1.29856 1.05864 1.05479 1.27365 1.31449 0.92791 0.99257 1.01807 1.69483 1.09788 1.42150 1.04728 0.83637 0.79813 0.75600 0.73542 1.16855 1.16984 1.17377 1.66002 0.86766 0.76316 0.76544 1.85204 1.32692 1.87478 1.69494 1.93125 1.31770 1.81383 1.82400 1.63534 1.29913 1.21740 1.09884 1.78183 1.13818 1.07866 1.05538 1.23622 0.91857 0.91872 0.95649 0.84944 1.58757 1.03003 1.38202 1.35426 1.25005 0.96228 0.99816 0.96288 1.22339 1.01936 0.92144 0.95781 1.20872 0.99248 1.05226 0.92522 0.92917 0.91563 0.89732 0.85091 0.85921 0.70761 0.82436 0.82323 0.80287 0.89133 0.88835 0.89025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.21 8.50 37.16 0.32 0.52 16 2 C -0.58 -0.77 2.75 -27.88 -0.08 -0.84 16 3 C -0.01 -0.03 5.33 -13.90 -0.07 -0.10 16 4 N -0.64 -4.50 13.33 56.23 0.75 -3.75 16 5 Si 1.06 1.64 28.21 -169.99 -4.79 -3.15 16 6 H -0.24 -0.21 7.11 56.52 0.40 0.19 16 7 H -0.25 -0.07 7.11 56.52 0.40 0.33 16 8 H -0.25 -0.78 7.11 56.52 0.40 -0.38 16 9 S 1.86 4.91 2.94 -107.50 -0.32 4.59 16 10 O -0.90 -1.89 12.85 -58.55 -0.75 -2.64 16 11 O -0.90 -7.20 15.23 -58.55 -0.89 -8.10 16 12 N -0.34 0.13 3.58 33.19 0.12 0.25 16 13 N -0.15 0.31 9.89 -7.47 -0.07 0.24 16 14 C 0.17 -0.72 5.01 -126.93 -0.64 -1.36 16 15 H 0.13 -0.81 8.14 -51.93 -0.42 -1.23 16 16 N -0.82 4.38 9.54 -7.55 -0.07 4.31 16 17 C -0.14 0.54 10.93 -35.41 -0.39 0.15 16 18 C -0.02 0.02 6.70 -82.80 -0.55 -0.54 16 19 C -0.12 0.09 9.86 36.01 0.35 0.44 16 20 H 0.05 -0.16 7.26 -51.93 -0.38 -0.53 16 21 H 0.07 -0.16 6.65 -51.93 -0.35 -0.50 16 22 H 0.08 -0.26 6.16 -51.93 -0.32 -0.58 16 23 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 24 H 0.32 2.56 4.91 -32.95 -0.16 2.39 16 25 H 0.43 -1.22 7.96 67.38 0.54 -0.68 16 26 H 0.36 -2.33 9.08 -39.30 -0.36 -2.69 16 27 H 0.36 -2.58 9.02 -39.29 -0.35 -2.94 16 28 H 0.18 -1.18 8.06 -52.48 -0.42 -1.61 16 29 H 0.09 -0.16 8.14 -51.93 -0.42 -0.59 16 30 H 0.09 -0.27 8.14 -51.93 -0.42 -0.70 16 31 H 0.09 0.22 6.08 -51.93 -0.32 -0.09 16 LS Contribution 263.70 15.07 3.97 3.97 Total: 0.00 -10.27 263.70 -5.72 -15.99 By element: Atomic # 1 Polarization: -7.39 SS G_CDS: -2.60 Total: -10.00 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.06 Total: -1.72 kcal Atomic # 7 Polarization: 0.33 SS G_CDS: 0.72 Total: 1.05 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: -1.64 Total: -10.73 kcal Atomic # 14 Polarization: 1.64 SS G_CDS: -4.79 Total: -3.15 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -0.32 Total: 4.59 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -10.27 -5.72 -15.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725550929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.863 kcal (2) G-P(sol) polarization free energy of solvation -10.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds