Wall clock time and date at job start Mon Mar 30 2020 03:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50695 * 109.47290 * 2 1 4 4 N 1.27947 * 120.00127 * 125.00059 * 3 2 1 5 5 Si 1.86798 * 120.00197 * 304.99962 * 3 2 1 6 6 H 1.48506 * 109.47297 * 89.99935 * 5 3 2 7 7 H 1.48503 * 109.47261 * 330.00116 * 5 3 2 8 8 H 1.48500 * 109.47454 * 210.00109 * 5 3 2 9 9 S 1.81398 * 109.46820 * 120.00101 * 2 1 3 10 10 O 1.52201 * 108.33468 * 302.20983 * 9 2 1 11 11 O 1.42106 * 114.64719 * 181.10290 * 9 2 1 12 12 N 1.65598 * 108.33506 * 60.00003 * 9 2 1 13 13 N 1.23351 * 122.73421 * 359.70282 * 12 9 2 14 14 C 1.47289 * 107.74582 * 179.86587 * 13 12 9 15 15 H 1.09000 * 111.04153 * 241.84243 * 14 13 12 16 16 N 1.46899 * 110.52857 * 118.66665 * 14 13 12 17 17 C 1.51843 * 102.98924 * 0.37324 * 14 13 12 18 18 C 1.33474 * 103.92824 * 359.78806 * 17 14 13 19 19 C 1.50705 * 124.59539 * 180.02562 * 18 17 14 20 20 H 1.09000 * 109.46800 * 300.00320 * 1 2 3 21 21 H 1.09001 * 109.47068 * 59.99316 * 1 2 3 22 22 H 1.08998 * 109.47668 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.46800 * 239.99680 * 2 1 3 24 24 H 0.97001 * 119.99590 * 359.97438 * 4 3 2 25 25 H 0.96691 * 113.99978 * 55.06696 * 10 9 2 26 26 H 1.00891 * 111.00244 * 66.53397 * 16 14 13 27 27 H 1.00902 * 110.99793 * 190.49069 * 16 14 13 28 28 H 1.08005 * 128.03677 * 179.81452 * 17 14 13 29 29 H 1.08992 * 109.47082 * 269.97757 * 19 18 17 30 30 H 1.08997 * 109.47065 * 29.98119 * 19 18 17 31 31 H 1.09006 * 109.46628 * 149.97827 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 7 2.8449 1.8120 0.9076 5 14 1.4690 2.6107 -1.3251 6 1 0.2384 3.3084 -0.8733 7 1 1.1824 1.8608 -2.5745 8 1 2.5382 3.6089 -1.5812 9 16 2.1346 -0.8552 1.4811 10 8 1.5681 -0.1506 2.7055 11 8 3.5497 -0.8978 1.6047 12 7 1.5672 -2.4106 1.4526 13 7 0.8522 -2.8433 0.5454 14 6 0.5459 -4.2518 0.8481 15 1 0.9346 -4.9122 0.0729 16 7 -0.9017 -4.4408 1.0112 17 6 1.2692 -4.4834 2.1630 18 6 1.8450 -3.3079 2.4243 19 6 2.6906 -3.0204 3.6381 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 3.1372 1.1942 1.5960 25 1 0.6041 -0.0761 2.7055 26 1 -1.3867 -4.2879 0.1398 27 1 -1.1072 -5.3557 1.3838 28 1 1.3090 -5.3891 2.7501 29 1 2.0557 -2.6542 4.4448 30 1 3.1918 -3.9344 3.9566 31 1 3.4361 -2.2645 3.3907 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725550929.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:37 Heat of formation + Delta-G solvation = 65.887513 kcal Electronic energy + Delta-G solvation = -17647.118118 eV Core-core repulsion = 14788.991459 eV Total energy + Delta-G solvation = -2858.126660 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.70571 -38.12975 -37.45163 -36.93913 -35.46515 -34.30524 -32.48231 -30.00010 -27.77605 -24.89784 -23.50440 -22.45895 -21.94300 -20.79865 -19.32105 -18.02234 -17.47616 -16.73567 -16.49114 -16.30043 -16.12276 -15.96025 -15.36222 -14.97731 -14.63628 -14.28372 -14.02086 -13.78729 -13.58391 -13.41934 -13.29850 -13.01195 -12.97578 -12.59646 -12.33327 -12.08480 -12.02335 -11.42001 -10.96181 -10.45319 -10.17747 -10.00662 -7.18510 -1.20519 0.82403 0.88848 1.11487 1.27047 1.56267 1.81195 1.84887 2.02369 2.63061 2.93806 3.19231 3.38653 3.70009 3.85335 3.92357 4.22525 4.27418 4.40084 4.54246 4.57260 4.61174 4.73297 4.81045 5.05480 5.13162 5.15634 5.41032 5.84984 5.94258 6.17888 6.52343 6.68786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.591 4.591 3 C -0.013 4.013 4 N -0.694 5.694 5 Si 1.079 2.921 6 H -0.230 1.230 7 H -0.219 1.219 8 H -0.283 1.283 9 S 1.795 4.205 10 O -0.905 6.905 11 O -0.978 6.978 12 N -0.315 5.315 13 N -0.107 5.107 14 C 0.150 3.850 15 H 0.177 0.823 16 N -0.811 5.811 17 C -0.085 4.085 18 C -0.070 4.070 19 C -0.120 4.120 20 H 0.060 0.940 21 H 0.073 0.927 22 H 0.098 0.902 23 H 0.132 0.868 24 H 0.305 0.695 25 H 0.440 0.560 26 H 0.372 0.628 27 H 0.378 0.622 28 H 0.219 0.781 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 -11.624 -2.042 15.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.697 4.697 3 C -0.255 4.255 4 N -0.312 5.312 5 Si 0.890 3.110 6 H -0.153 1.153 7 H -0.141 1.141 8 H -0.208 1.208 9 S 1.883 4.117 10 O -0.762 6.762 11 O -0.965 6.965 12 N -0.223 5.223 13 N -0.004 5.004 14 C -0.052 4.052 15 H 0.193 0.807 16 N -0.352 5.352 17 C -0.116 4.116 18 C -0.175 4.175 19 C -0.178 4.178 20 H 0.079 0.921 21 H 0.091 0.909 22 H 0.117 0.883 23 H 0.149 0.851 24 H 0.126 0.874 25 H 0.305 0.695 26 H 0.189 0.811 27 H 0.197 0.803 28 H 0.235 0.765 29 H 0.112 0.888 30 H 0.133 0.867 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.885 -8.745 -1.956 12.619 hybrid contribution 0.954 -1.745 0.455 2.040 sum -7.931 -10.490 -1.501 13.236 Atomic orbital electron populations 1.21353 0.88377 1.04749 1.03053 1.29952 1.07532 1.03478 1.28755 1.32255 0.90761 1.01822 1.00625 1.69594 1.12638 1.42695 1.06311 0.83536 0.79093 0.74506 0.73838 1.15279 1.14067 1.20792 1.73787 0.84550 0.76896 0.76514 1.85140 1.33595 1.87673 1.69806 1.92877 1.37537 1.82493 1.83632 1.64741 1.24995 1.23833 1.08727 1.78184 1.06511 1.09001 1.06695 1.24084 0.93741 0.90728 0.96657 0.80728 1.58752 1.00512 1.39663 1.36284 1.25722 0.91911 0.99336 0.94635 1.22620 1.04514 0.93219 0.97105 1.20814 0.98740 1.05001 0.93213 0.92138 0.90854 0.88343 0.85053 0.87429 0.69550 0.81098 0.80338 0.76468 0.88763 0.86735 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.40 8.50 71.98 0.61 1.01 16 2 C -0.59 -2.83 2.75 29.85 0.08 -2.74 16 3 C -0.01 -0.14 5.33 88.67 0.47 0.33 16 4 N -0.69 -13.15 13.33 24.11 0.32 -12.83 16 5 Si 1.08 4.85 28.21 68.60 1.93 6.79 16 6 H -0.23 -0.44 7.11 99.48 0.71 0.27 16 7 H -0.22 0.03 7.11 99.48 0.71 0.73 16 8 H -0.28 -2.66 7.11 99.48 0.71 -1.95 16 9 S 1.79 15.29 2.94 -56.49 -0.17 15.12 16 10 O -0.91 -7.39 12.85 -126.68 -1.63 -9.01 16 11 O -0.98 -21.20 15.23 -126.68 -1.93 -23.13 16 12 N -0.32 0.25 3.58 -48.91 -0.18 0.08 16 13 N -0.11 0.68 9.89 -177.55 -1.76 -1.08 16 14 C 0.15 -1.96 5.01 128.74 0.65 -1.32 16 15 H 0.18 -3.24 8.14 -2.39 -0.02 -3.26 16 16 N -0.81 12.81 9.54 -177.80 -1.70 11.11 16 17 C -0.09 1.01 10.93 24.97 0.27 1.28 16 18 C -0.07 0.21 6.70 40.97 0.27 0.49 16 19 C -0.12 0.02 9.86 71.24 0.70 0.72 16 20 H 0.06 -0.32 7.26 -2.39 -0.02 -0.34 16 21 H 0.07 -0.41 6.65 -2.39 -0.02 -0.42 16 22 H 0.10 -0.75 6.16 -2.39 -0.01 -0.76 16 23 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 24 H 0.31 6.75 4.91 -97.71 -0.48 6.27 16 25 H 0.44 -1.15 7.96 -87.94 -0.70 -1.85 16 26 H 0.37 -6.69 9.08 -89.70 -0.81 -7.50 16 27 H 0.38 -7.55 9.02 -89.69 -0.81 -8.36 16 28 H 0.22 -4.20 8.06 -2.91 -0.02 -4.22 16 29 H 0.09 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.11 -0.69 8.14 -2.39 -0.02 -0.71 16 31 H 0.05 0.48 6.08 -2.38 -0.01 0.46 16 Total: 0.00 -31.84 263.70 -2.88 -34.72 By element: Atomic # 1 Polarization: -20.71 SS G_CDS: -0.85 Total: -21.56 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 3.06 Total: -0.22 kcal Atomic # 7 Polarization: 0.60 SS G_CDS: -3.31 Total: -2.71 kcal Atomic # 8 Polarization: -28.59 SS G_CDS: -3.56 Total: -32.15 kcal Atomic # 14 Polarization: 4.85 SS G_CDS: 1.93 Total: 6.79 kcal Atomic # 16 Polarization: 15.29 SS G_CDS: -0.17 Total: 15.12 kcal Total: -31.84 -2.88 -34.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725550929.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.612 kcal (2) G-P(sol) polarization free energy of solvation -31.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds