Wall clock time and date at job start Mon Mar 30 2020 03:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46758 * 2 1 4 4 N 1.27946 * 119.99568 * 234.86283 * 3 2 1 5 5 Si 1.86800 * 120.00569 * 54.86519 * 3 2 1 6 6 H 1.48497 * 109.46987 * 84.94124 * 5 3 2 7 7 H 1.48497 * 109.47008 * 204.94653 * 5 3 2 8 8 H 1.48501 * 109.46564 * 324.94196 * 5 3 2 9 9 S 1.81396 * 109.47031 * 119.99538 * 2 1 3 10 10 O 1.52194 * 108.33793 * 306.58280 * 9 2 1 11 11 O 1.42104 * 114.64942 * 185.47245 * 9 2 1 12 12 N 1.65605 * 108.33171 * 64.37381 * 9 2 1 13 13 N 1.23340 * 122.73602 * 0.02562 * 12 9 2 14 14 C 1.47290 * 107.74989 * 180.02562 * 13 12 9 15 15 H 1.09000 * 110.71242 * 118.37422 * 14 13 12 16 16 N 1.46895 * 110.70916 * 241.45044 * 14 13 12 17 17 C 1.51842 * 102.98494 * 0.02562 * 14 13 12 18 18 C 1.33472 * 103.93221 * 359.74486 * 17 14 13 19 19 C 1.50703 * 124.59925 * 180.25450 * 18 17 14 20 20 H 1.08999 * 109.47435 * 299.99934 * 1 2 3 21 21 H 1.09008 * 109.47362 * 60.00403 * 1 2 3 22 22 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47435 * 240.00066 * 2 1 3 24 24 H 0.97008 * 119.99836 * 180.02562 * 4 3 2 25 25 H 0.96702 * 114.00064 * 55.05920 * 10 9 2 26 26 H 1.00896 * 111.00431 * 298.54319 * 16 14 13 27 27 H 1.00903 * 110.99957 * 62.50298 * 16 14 13 28 28 H 1.08000 * 128.03407 * 180.02562 * 17 14 13 29 29 H 1.09002 * 109.46497 * 270.18610 * 19 18 17 30 30 H 1.08996 * 109.47025 * 30.18588 * 19 18 17 31 31 H 1.08996 * 109.47168 * 150.19164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.8467 1.8114 -0.9062 5 14 1.4658 2.6119 1.3229 6 1 2.3219 2.4584 2.5265 7 1 1.5712 4.0031 0.8144 8 1 0.0539 2.3208 1.6792 9 16 2.1346 -0.8550 1.4812 10 8 1.4824 -0.2195 2.7006 11 8 3.5443 -0.8134 1.6555 12 7 1.6672 -2.4413 1.3941 13 7 1.0180 -2.8945 0.4484 14 6 0.7851 -4.3254 0.7082 15 1 -0.2818 -4.5345 0.7857 16 7 1.3996 -5.1505 -0.3403 17 6 1.4734 -4.5461 2.0436 18 6 1.9696 -3.3460 2.3516 19 6 2.7574 -3.0402 3.5994 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1703 2.7259 -0.9060 25 1 0.5161 -0.2047 2.6670 26 1 0.9970 -4.9472 -1.2429 27 1 2.4012 -5.0292 -0.3555 28 1 1.5484 -5.4625 2.6101 29 1 2.0758 -2.7360 4.3938 30 1 3.3044 -3.9301 3.9109 31 1 3.4615 -2.2334 3.3961 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725550930.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:40 Heat of formation + Delta-G solvation = 79.159228 kcal Electronic energy + Delta-G solvation = -17614.120798 eV Core-core repulsion = 14756.569643 eV Total energy + Delta-G solvation = -2857.551155 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.80597 -38.05512 -37.12587 -36.75959 -35.63187 -34.44876 -32.81957 -30.19224 -27.83613 -25.40642 -23.65702 -22.74360 -20.92506 -20.81352 -19.12551 -18.31976 -18.06799 -17.24266 -16.91326 -16.51146 -15.90743 -15.57677 -15.41542 -14.86523 -14.64741 -14.51000 -14.14864 -13.93415 -13.72260 -13.50033 -13.27206 -13.03795 -12.75662 -12.59242 -12.50480 -12.34900 -12.06964 -11.54495 -10.78422 -10.68342 -10.47030 -9.76712 -7.18883 -1.46638 0.68738 0.91221 1.04419 1.17483 1.29654 1.69767 1.83875 1.94276 2.57680 2.82207 3.09576 3.26650 3.49579 3.65612 3.86140 4.06468 4.13073 4.29738 4.38187 4.41922 4.57231 4.66145 4.74553 5.03247 5.07902 5.18794 5.23134 5.42280 5.66175 5.83511 6.22347 7.03882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.507 4.507 3 C 0.010 3.990 4 N -0.632 5.632 5 Si 0.886 3.114 6 H -0.227 1.227 7 H -0.242 1.242 8 H -0.221 1.221 9 S 1.847 4.153 10 O -0.895 6.895 11 O -0.890 6.890 12 N -0.336 5.336 13 N -0.193 5.193 14 C 0.168 3.832 15 H 0.151 0.849 16 N -0.782 5.782 17 C -0.129 4.129 18 C -0.032 4.032 19 C -0.121 4.121 20 H 0.053 0.947 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.129 0.871 24 H 0.334 0.666 25 H 0.428 0.572 26 H 0.364 0.636 27 H 0.354 0.646 28 H 0.184 0.816 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.213 -5.407 1.482 8.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.612 4.612 3 C -0.239 4.239 4 N -0.246 5.246 5 Si 0.702 3.298 6 H -0.149 1.149 7 H -0.165 1.165 8 H -0.144 1.144 9 S 1.935 4.065 10 O -0.748 6.748 11 O -0.877 6.877 12 N -0.246 5.246 13 N -0.095 5.095 14 C -0.033 4.033 15 H 0.168 0.832 16 N -0.317 5.317 17 C -0.161 4.161 18 C -0.136 4.136 19 C -0.179 4.179 20 H 0.071 0.929 21 H 0.085 0.915 22 H 0.097 0.903 23 H 0.147 0.853 24 H 0.151 0.849 25 H 0.290 0.710 26 H 0.180 0.820 27 H 0.168 0.832 28 H 0.201 0.799 29 H 0.108 0.892 30 H 0.112 0.888 31 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.403 -4.952 1.723 7.529 hybrid contribution 0.317 1.608 -0.067 1.640 sum -5.087 -3.344 1.656 6.309 Atomic orbital electron populations 1.21412 0.90912 1.03195 1.02594 1.29018 1.03805 1.01354 1.27042 1.29908 0.94399 1.00513 0.99122 1.68201 1.09764 1.22495 1.24107 0.86396 0.83822 0.79663 0.79956 1.14921 1.16469 1.14354 1.66504 0.86453 0.77238 0.76325 1.85234 1.31148 1.88503 1.69903 1.93113 1.31453 1.81582 1.81510 1.63658 1.28107 1.24064 1.08747 1.78524 1.14340 1.11321 1.05312 1.23673 1.02685 0.85285 0.91658 0.83208 1.59424 1.10923 1.52372 1.08975 1.25327 0.94543 0.99295 0.96908 1.22704 1.02006 0.91967 0.96895 1.20876 0.99927 1.05318 0.91747 0.92850 0.91475 0.90277 0.85282 0.84907 0.71038 0.82025 0.83192 0.79925 0.89163 0.88806 0.88884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.24 8.43 37.16 0.31 0.55 16 2 C -0.51 -0.74 2.81 -27.88 -0.08 -0.82 16 3 C 0.01 0.04 4.91 -13.90 -0.07 -0.03 16 4 N -0.63 -3.19 13.80 56.23 0.78 -2.41 16 5 Si 0.89 2.06 25.68 -169.99 -4.37 -2.31 16 6 H -0.23 -0.94 7.11 56.52 0.40 -0.53 16 7 H -0.24 -0.60 7.11 56.52 0.40 -0.20 16 8 H -0.22 0.05 6.30 56.52 0.36 0.41 16 9 S 1.85 3.77 3.69 -107.50 -0.40 3.37 16 10 O -0.90 -0.59 11.32 -58.56 -0.66 -1.25 16 11 O -0.89 -6.96 16.52 -58.56 -0.97 -7.93 16 12 N -0.34 0.42 3.58 33.19 0.12 0.53 16 13 N -0.19 0.54 10.28 -7.47 -0.08 0.47 16 14 C 0.17 -0.71 5.01 -126.93 -0.64 -1.35 16 15 H 0.15 -0.90 8.14 -51.93 -0.42 -1.32 16 16 N -0.78 3.32 9.58 -7.55 -0.07 3.25 16 17 C -0.13 0.53 10.90 -35.41 -0.39 0.14 16 18 C -0.03 0.06 6.70 -82.80 -0.55 -0.49 16 19 C -0.12 0.18 9.86 36.01 0.35 0.54 16 20 H 0.05 -0.19 5.22 -51.93 -0.27 -0.46 16 21 H 0.07 -0.10 8.14 -51.92 -0.42 -0.52 16 22 H 0.08 -0.31 6.59 -51.93 -0.34 -0.65 16 23 H 0.13 0.25 8.11 -51.92 -0.42 -0.17 16 24 H 0.33 1.09 8.23 -40.82 -0.34 0.76 16 25 H 0.43 -2.05 7.81 67.38 0.53 -1.52 16 26 H 0.36 -1.97 9.08 -39.29 -0.36 -2.32 16 27 H 0.35 -1.43 8.96 -39.29 -0.35 -1.78 16 28 H 0.18 -1.13 8.06 -52.49 -0.42 -1.55 16 29 H 0.09 -0.27 8.14 -51.93 -0.42 -0.69 16 30 H 0.09 -0.32 8.14 -51.93 -0.42 -0.74 16 31 H 0.09 0.16 6.07 -51.93 -0.32 -0.15 16 LS Contribution 264.27 15.07 3.98 3.98 Total: 0.00 -9.69 264.27 -5.54 -15.23 By element: Atomic # 1 Polarization: -8.65 SS G_CDS: -2.82 Total: -11.47 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -1.06 Total: -1.46 kcal Atomic # 7 Polarization: 1.09 SS G_CDS: 0.75 Total: 1.84 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: -1.63 Total: -9.18 kcal Atomic # 14 Polarization: 2.06 SS G_CDS: -4.37 Total: -2.31 kcal Atomic # 16 Polarization: 3.77 SS G_CDS: -0.40 Total: 3.37 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -9.69 -5.54 -15.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725550930.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.389 kcal (2) G-P(sol) polarization free energy of solvation -9.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds