Wall clock time and date at job start Mon Mar 30 2020 03:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.46758 * 2 1 4 4 N 1.27946 * 119.99568 * 234.86283 * 3 2 1 5 5 Si 1.86800 * 120.00569 * 54.86519 * 3 2 1 6 6 H 1.48497 * 109.46987 * 84.94124 * 5 3 2 7 7 H 1.48497 * 109.47008 * 204.94653 * 5 3 2 8 8 H 1.48501 * 109.46564 * 324.94196 * 5 3 2 9 9 S 1.81396 * 109.47031 * 119.99538 * 2 1 3 10 10 O 1.52194 * 108.33793 * 306.58280 * 9 2 1 11 11 O 1.42104 * 114.64942 * 185.47245 * 9 2 1 12 12 N 1.65605 * 108.33171 * 64.37381 * 9 2 1 13 13 N 1.23340 * 122.73602 * 0.02562 * 12 9 2 14 14 C 1.47290 * 107.74989 * 180.02562 * 13 12 9 15 15 H 1.09000 * 110.71242 * 118.37422 * 14 13 12 16 16 N 1.46895 * 110.70916 * 241.45044 * 14 13 12 17 17 C 1.51842 * 102.98494 * 0.02562 * 14 13 12 18 18 C 1.33472 * 103.93221 * 359.74486 * 17 14 13 19 19 C 1.50703 * 124.59925 * 180.25450 * 18 17 14 20 20 H 1.08999 * 109.47435 * 299.99934 * 1 2 3 21 21 H 1.09008 * 109.47362 * 60.00403 * 1 2 3 22 22 H 1.09000 * 109.47293 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47435 * 240.00066 * 2 1 3 24 24 H 0.97008 * 119.99836 * 180.02562 * 4 3 2 25 25 H 0.96702 * 114.00064 * 55.05920 * 10 9 2 26 26 H 1.00896 * 111.00431 * 298.54319 * 16 14 13 27 27 H 1.00903 * 110.99957 * 62.50298 * 16 14 13 28 28 H 1.08000 * 128.03407 * 180.02562 * 17 14 13 29 29 H 1.09002 * 109.46497 * 270.18610 * 19 18 17 30 30 H 1.08996 * 109.47025 * 30.18588 * 19 18 17 31 31 H 1.08996 * 109.47168 * 150.19164 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.8467 1.8114 -0.9062 5 14 1.4658 2.6119 1.3229 6 1 2.3219 2.4584 2.5265 7 1 1.5712 4.0031 0.8144 8 1 0.0539 2.3208 1.6792 9 16 2.1346 -0.8550 1.4812 10 8 1.4824 -0.2195 2.7006 11 8 3.5443 -0.8134 1.6555 12 7 1.6672 -2.4413 1.3941 13 7 1.0180 -2.8945 0.4484 14 6 0.7851 -4.3254 0.7082 15 1 -0.2818 -4.5345 0.7857 16 7 1.3996 -5.1505 -0.3403 17 6 1.4734 -4.5461 2.0436 18 6 1.9696 -3.3460 2.3516 19 6 2.7574 -3.0402 3.5994 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8901 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 3.1703 2.7259 -0.9060 25 1 0.5161 -0.2047 2.6670 26 1 0.9970 -4.9472 -1.2429 27 1 2.4012 -5.0292 -0.3555 28 1 1.5484 -5.4625 2.6101 29 1 2.0758 -2.7360 4.3938 30 1 3.3044 -3.9301 3.9109 31 1 3.4615 -2.2334 3.3961 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725550930.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:39 Heat of formation + Delta-G solvation = 69.818763 kcal Electronic energy + Delta-G solvation = -17614.525831 eV Core-core repulsion = 14756.569643 eV Total energy + Delta-G solvation = -2857.956188 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.83977 -37.90268 -37.16678 -36.76230 -35.46072 -34.37113 -32.74193 -29.98584 -27.74506 -25.29126 -23.50205 -22.55451 -20.83314 -20.77556 -19.08660 -18.29491 -18.01106 -17.08795 -16.87076 -16.39359 -15.79609 -15.44701 -15.38741 -14.82468 -14.55891 -14.40567 -13.97319 -13.83922 -13.66412 -13.37083 -13.20303 -13.05444 -12.69410 -12.55602 -12.48522 -12.28730 -12.11463 -11.61531 -10.74087 -10.51314 -10.29650 -9.91846 -7.11814 -1.25055 0.69833 0.87348 0.88483 1.13862 1.26047 1.52845 1.69887 2.06017 2.66228 2.94732 3.31015 3.34870 3.57010 3.71019 4.06139 4.26702 4.31572 4.47451 4.58025 4.61938 4.73773 4.85612 4.87887 5.17073 5.19652 5.28618 5.43460 5.64990 6.05572 6.12562 6.26827 6.90116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.516 4.516 3 C 0.002 3.998 4 N -0.680 5.680 5 Si 0.896 3.104 6 H -0.264 1.264 7 H -0.252 1.252 8 H -0.168 1.168 9 S 1.771 4.229 10 O -0.897 6.897 11 O -0.975 6.975 12 N -0.298 5.298 13 N -0.127 5.127 14 C 0.144 3.856 15 H 0.203 0.797 16 N -0.776 5.776 17 C -0.070 4.070 18 C -0.077 4.077 19 C -0.121 4.121 20 H 0.070 0.930 21 H 0.057 0.943 22 H 0.099 0.901 23 H 0.107 0.893 24 H 0.332 0.668 25 H 0.443 0.557 26 H 0.376 0.624 27 H 0.356 0.644 28 H 0.218 0.782 29 H 0.101 0.899 30 H 0.111 0.889 31 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.357 -9.229 1.717 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.618 4.618 3 C -0.245 4.245 4 N -0.295 5.295 5 Si 0.712 3.288 6 H -0.189 1.189 7 H -0.176 1.176 8 H -0.088 1.088 9 S 1.857 4.143 10 O -0.755 6.755 11 O -0.964 6.964 12 N -0.206 5.206 13 N -0.026 5.026 14 C -0.056 4.056 15 H 0.219 0.781 16 N -0.313 5.313 17 C -0.101 4.101 18 C -0.182 4.182 19 C -0.179 4.179 20 H 0.089 0.911 21 H 0.076 0.924 22 H 0.118 0.882 23 H 0.126 0.874 24 H 0.148 0.852 25 H 0.308 0.692 26 H 0.193 0.807 27 H 0.170 0.830 28 H 0.234 0.766 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -8.630 -8.819 1.877 12.481 hybrid contribution 1.208 2.107 -0.134 2.432 sum -7.422 -6.712 1.743 10.158 Atomic orbital electron populations 1.21437 0.88696 1.04589 1.02928 1.29288 1.05543 0.99209 1.27789 1.30598 0.93209 1.02339 0.98360 1.68300 1.12263 1.22703 1.26263 0.86299 0.86078 0.78588 0.77877 1.18886 1.17595 1.08846 1.75955 0.83941 0.78166 0.76266 1.85119 1.32489 1.88391 1.69473 1.92839 1.37888 1.82777 1.82919 1.65551 1.20707 1.26810 1.07484 1.78618 1.03927 1.13187 1.06820 1.24434 1.05346 0.83691 0.92096 0.78147 1.59409 1.11149 1.51211 1.09504 1.25913 0.89549 0.98935 0.95692 1.23003 1.04261 0.92857 0.98110 1.20838 0.99703 1.04731 0.92586 0.91135 0.92376 0.88206 0.87449 0.85233 0.69239 0.80654 0.83037 0.76579 0.88049 0.87010 0.92856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.46 8.43 71.98 0.61 1.07 16 2 C -0.52 -2.79 2.81 29.85 0.08 -2.70 16 3 C 0.00 0.02 4.91 88.67 0.44 0.46 16 4 N -0.68 -10.16 13.80 24.11 0.33 -9.83 16 5 Si 0.90 6.57 25.68 68.60 1.76 8.33 16 6 H -0.26 -3.48 7.11 99.48 0.71 -2.77 16 7 H -0.25 -2.04 7.11 99.48 0.71 -1.33 16 8 H -0.17 0.21 6.30 99.48 0.63 0.83 16 9 S 1.77 11.83 3.69 -56.49 -0.21 11.62 16 10 O -0.90 -3.25 11.32 -126.68 -1.43 -4.69 16 11 O -0.98 -20.59 16.52 -126.68 -2.09 -22.69 16 12 N -0.30 0.98 3.58 -48.91 -0.18 0.80 16 13 N -0.13 1.08 10.28 -177.56 -1.82 -0.75 16 14 C 0.14 -2.00 5.01 128.74 0.65 -1.35 16 15 H 0.20 -3.97 8.14 -2.39 -0.02 -3.99 16 16 N -0.78 10.24 9.58 -177.81 -1.70 8.54 16 17 C -0.07 0.92 10.90 24.97 0.27 1.19 16 18 C -0.08 0.44 6.70 40.97 0.27 0.71 16 19 C -0.12 0.33 9.86 71.24 0.70 1.03 16 20 H 0.07 -0.57 5.22 -2.39 -0.01 -0.58 16 21 H 0.06 -0.15 8.14 -2.38 -0.02 -0.17 16 22 H 0.10 -0.98 6.59 -2.39 -0.02 -0.99 16 23 H 0.11 0.79 8.11 -2.39 -0.02 0.77 16 24 H 0.33 3.93 8.23 -92.70 -0.76 3.17 16 25 H 0.44 -3.95 7.81 -87.93 -0.69 -4.63 16 26 H 0.38 -5.76 9.08 -89.70 -0.81 -6.58 16 27 H 0.36 -4.20 8.96 -89.69 -0.80 -5.01 16 28 H 0.22 -4.11 8.06 -2.91 -0.02 -4.13 16 29 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 30 H 0.11 -0.85 8.14 -2.39 -0.02 -0.87 16 31 H 0.05 0.37 6.07 -2.39 -0.01 0.36 16 Total: 0.00 -31.29 264.27 -3.52 -34.80 By element: Atomic # 1 Polarization: -25.36 SS G_CDS: -1.19 Total: -26.55 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 3.02 Total: 0.40 kcal Atomic # 7 Polarization: 2.13 SS G_CDS: -3.37 Total: -1.24 kcal Atomic # 8 Polarization: -23.85 SS G_CDS: -3.53 Total: -27.37 kcal Atomic # 14 Polarization: 6.57 SS G_CDS: 1.76 Total: 8.33 kcal Atomic # 16 Polarization: 11.83 SS G_CDS: -0.21 Total: 11.62 kcal Total: -31.29 -3.52 -34.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725550930.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.622 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds