Wall clock time and date at job start Mon Mar 30 2020 03:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.35964 * 126.22626 * 2 1 4 4 H 0.96999 * 126.07226 * 359.97438 * 3 2 1 5 5 N 1.40075 * 107.85890 * 180.02562 * 3 2 1 6 6 C 1.46502 * 125.82223 * 179.73860 * 5 3 2 7 7 C 1.30859 * 108.36210 * 0.02562 * 5 3 2 8 8 C 1.35704 * 126.22201 * 180.02562 * 2 1 3 9 9 N 1.40800 * 126.06708 * 359.97438 * 8 2 1 10 10 S 1.65603 * 119.99962 * 215.00411 * 9 8 2 11 11 O 1.52202 * 109.47419 * 59.99459 * 10 9 8 12 12 O 1.42105 * 109.46904 * 299.99727 * 10 9 8 13 13 C 1.76205 * 109.47211 * 179.97438 * 10 9 8 14 14 H 1.07998 * 119.99668 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99901 * 180.02562 * 13 10 9 16 16 N 1.31516 * 119.99894 * 359.97438 * 15 13 10 17 17 Si 1.86798 * 119.99974 * 179.97438 * 15 13 10 18 18 H 1.48499 * 109.47121 * 89.99490 * 17 15 13 19 19 H 1.48491 * 109.47163 * 209.99649 * 17 15 13 20 20 H 1.48499 * 109.47124 * 330.00103 * 17 15 13 21 21 H 1.09003 * 109.47401 * 89.96960 * 1 2 3 22 22 H 1.09003 * 109.47544 * 209.97370 * 1 2 3 23 23 H 1.09003 * 109.46755 * 329.97026 * 1 2 3 24 24 H 1.08998 * 109.47498 * 90.02197 * 6 5 3 25 25 H 1.08996 * 109.47042 * 210.02791 * 6 5 3 26 26 H 1.09009 * 109.46804 * 330.02556 * 6 5 3 27 27 H 1.07995 * 125.82152 * 180.02562 * 7 5 3 28 28 H 0.97005 * 120.00329 * 34.99594 * 9 8 2 29 29 H 0.96701 * 113.99235 * 60.00027 * 11 10 9 30 30 H 0.97003 * 119.99463 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3105 1.0968 0.0000 4 1 2.0156 2.0209 -0.0004 5 7 3.6399 0.6554 -0.0006 6 6 4.8280 1.5126 -0.0062 7 6 3.6398 -0.6532 -0.0015 8 6 2.3089 -1.0948 -0.0005 9 7 1.8806 -2.4360 -0.0006 10 16 2.7480 -3.5823 0.8216 11 8 2.8042 -3.2143 2.2974 12 8 4.0677 -3.6434 0.2981 13 6 1.9693 -5.1522 0.6375 14 1 1.0647 -5.2411 0.0544 15 6 2.5144 -6.2668 1.2388 16 7 3.6158 -6.1583 1.9493 17 14 1.6885 -7.9310 1.0443 18 1 2.2338 -8.6171 -0.1545 19 1 1.9506 -8.7576 2.2497 20 1 0.2246 -7.7412 0.8828 21 1 -0.3634 0.0005 -1.0277 22 1 -0.3634 -0.8902 0.5134 23 1 -0.3633 0.8898 0.5143 24 1 5.1247 1.7291 1.0200 25 1 5.6422 1.0016 -0.5199 26 1 4.6007 2.4451 -0.5231 27 1 4.5154 -1.2853 -0.0017 28 1 1.0773 -2.6887 -0.4821 29 1 1.9370 -3.1545 2.7210 30 1 3.9990 -6.9425 2.3727 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725551398.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:42 Heat of formation + Delta-G solvation = 66.682330 kcal Electronic energy + Delta-G solvation = -16517.912714 eV Core-core repulsion = 13673.476260 eV Total energy + Delta-G solvation = -2844.436454 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.30200 -35.44297 -34.02397 -33.49874 -32.93731 -32.17338 -29.11449 -28.36747 -25.84583 -24.37332 -20.96613 -19.60555 -18.47080 -17.97161 -17.25360 -16.12039 -15.14371 -14.80093 -14.47830 -13.93668 -13.84164 -13.65568 -13.10854 -12.95004 -12.57909 -12.32744 -11.97603 -11.70628 -11.61028 -11.20238 -11.16214 -10.88071 -10.61651 -10.29169 -9.77091 -9.15601 -9.04478 -8.65071 -8.50113 -6.66850 -6.54030 -5.08188 -2.71029 1.08937 2.73380 3.10671 3.18783 3.22130 3.81529 4.11717 4.39125 4.75476 5.01269 5.33482 5.54320 5.63090 5.66101 5.70413 5.74675 5.96412 6.24967 6.44713 6.64015 6.89061 7.04698 7.36082 7.48292 7.99154 8.15031 8.37982 8.53236 8.71755 8.92623 9.07453 10.38959 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.041681 B = 0.007036 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.610092 B = 3978.773500 C = 4403.013841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.000 4.000 3 N -0.503 5.503 4 H 0.419 0.581 5 N -0.365 5.365 6 C 0.124 3.876 7 C -0.118 4.118 8 C 0.126 3.874 9 N -1.014 6.014 10 S 2.177 3.823 11 O -0.889 6.889 12 O -0.985 6.985 13 C -0.972 4.972 14 H 0.093 0.907 15 C 0.124 3.876 16 N -0.845 5.845 17 Si 0.896 3.104 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.264 1.264 21 H 0.057 0.943 22 H 0.077 0.923 23 H 0.055 0.945 24 H 0.047 0.953 25 H 0.081 0.919 26 H 0.064 0.936 27 H 0.168 0.832 28 H 0.365 0.635 29 H 0.410 0.590 30 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.117 13.834 -1.535 15.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.132 4.132 3 N -0.235 5.235 4 H 0.261 0.739 5 N -0.174 5.174 6 C -0.020 4.020 7 C -0.277 4.277 8 C 0.022 3.978 9 N -0.747 5.747 10 S 2.323 3.677 11 O -0.736 6.736 12 O -0.973 6.973 13 C -1.103 5.103 14 H 0.111 0.889 15 C -0.091 4.091 16 N -0.476 5.476 17 Si 0.720 3.280 18 H -0.195 1.195 19 H -0.204 1.204 20 H -0.188 1.188 21 H 0.075 0.925 22 H 0.096 0.904 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.100 0.900 26 H 0.082 0.918 27 H 0.185 0.815 28 H 0.196 0.804 29 H 0.268 0.732 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.288 13.106 -0.907 13.819 hybrid contribution -1.133 -1.297 -0.456 1.781 sum -5.421 11.809 -1.364 13.065 Atomic orbital electron populations 1.20031 0.88257 1.02468 1.01342 1.20083 0.92040 0.85985 1.15129 1.43289 0.94997 1.06025 1.79220 0.73875 1.43336 0.94305 1.04084 1.75696 1.21511 0.84934 0.93927 1.01581 1.20970 0.97846 0.82241 1.26627 1.17713 0.90839 0.86108 1.03175 1.58930 1.39259 1.11625 1.64852 1.41454 0.79122 0.75965 0.71146 1.85748 1.42974 1.91104 1.53800 1.92812 1.43653 1.86865 1.73924 1.30631 1.23056 1.14854 1.41791 0.88850 1.25006 0.92825 1.00054 0.91234 1.70034 1.17246 1.32591 1.27765 0.86520 0.80576 0.82361 0.78498 1.19526 1.20376 1.18814 0.92482 0.90390 0.92603 0.93499 0.90000 0.91770 0.81533 0.80432 0.73152 0.90660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 130. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.74 10.38 36.01 0.37 -0.37 16 2 C 0.00 0.01 7.26 -81.67 -0.59 -0.58 16 3 N -0.50 -7.19 7.27 33.72 0.25 -6.94 16 4 H 0.42 4.24 8.96 -182.62 -1.64 2.60 16 5 N -0.36 -6.01 3.89 -67.80 -0.26 -6.27 16 6 C 0.12 1.41 11.42 59.85 0.68 2.10 16 7 C -0.12 -2.52 10.76 -17.22 -0.19 -2.70 16 8 C 0.13 2.59 6.70 -83.89 -0.56 2.03 16 9 N -1.01 -21.71 5.95 32.30 0.19 -21.52 16 10 S 2.18 58.02 4.41 -107.50 -0.47 57.55 16 11 O -0.89 -22.75 13.56 -58.38 -0.79 -23.55 16 12 O -0.99 -32.02 16.71 -58.38 -0.98 -32.99 16 13 C -0.97 -27.02 9.99 30.60 0.31 -26.71 16 14 H 0.09 2.39 7.81 -52.49 -0.41 1.98 16 15 C 0.12 3.55 5.46 -17.82 -0.10 3.45 16 16 N -0.85 -25.71 13.16 55.43 0.73 -24.98 16 17 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 21 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 22 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 23 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 26 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 27 H 0.17 4.02 6.96 -52.49 -0.37 3.66 16 28 H 0.37 6.84 8.96 -34.47 -0.31 6.53 16 29 H 0.41 8.06 9.03 67.38 0.61 8.67 16 30 H 0.28 7.89 8.31 -40.82 -0.34 7.56 16 LS Contribution 276.66 15.07 4.17 4.17 Total: -1.00 -40.14 276.66 -6.05 -46.19 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -3.78 Total: 15.24 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.79 kcal Atomic # 7 Polarization: -60.62 SS G_CDS: 0.90 Total: -59.72 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: -1.77 Total: -56.54 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 58.02 SS G_CDS: -0.47 Total: 57.55 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -40.14 -6.05 -46.19 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725551398.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.868 kcal (2) G-P(sol) polarization free energy of solvation -40.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds