Wall clock time and date at job start Mon Mar 30 2020 03:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.35965 * 126.22363 * 2 1 4 4 H 0.97005 * 126.07157 * 359.97438 * 3 2 1 5 5 N 1.40072 * 107.86040 * 179.97438 * 3 2 1 6 6 C 1.46502 * 125.82205 * 179.97438 * 5 3 2 7 7 C 1.30871 * 108.35895 * 359.97438 * 5 3 2 8 8 C 1.35705 * 126.22489 * 179.68768 * 2 1 3 9 9 N 1.40796 * 126.06431 * 359.97438 * 8 2 1 10 10 S 1.65607 * 119.99623 * 214.99853 * 9 8 2 11 11 O 1.52194 * 109.47298 * 300.00340 * 10 9 8 12 12 O 1.42103 * 109.47017 * 60.00511 * 10 9 8 13 13 C 1.76202 * 109.47014 * 180.02562 * 10 9 8 14 14 H 1.08006 * 119.99835 * 0.02562 * 13 10 9 15 15 C 1.37868 * 120.00192 * 180.02562 * 13 10 9 16 16 N 1.31511 * 120.00146 * 359.97438 * 15 13 10 17 17 Si 1.86805 * 120.00207 * 179.97438 * 15 13 10 18 18 H 1.48497 * 109.46998 * 89.99974 * 17 15 13 19 19 H 1.48498 * 109.47021 * 209.99898 * 17 15 13 20 20 H 1.48497 * 109.47043 * 329.99827 * 17 15 13 21 21 H 1.09002 * 109.47152 * 90.02713 * 1 2 3 22 22 H 1.09001 * 109.46980 * 330.02813 * 1 2 3 23 23 H 1.09004 * 109.47113 * 210.02794 * 1 2 3 24 24 H 1.08992 * 109.46959 * 89.97531 * 6 5 3 25 25 H 1.09006 * 109.46985 * 209.97712 * 6 5 3 26 26 H 1.09006 * 109.46921 * 329.97075 * 6 5 3 27 27 H 1.08001 * 125.81592 * 180.02562 * 7 5 3 28 28 H 0.96995 * 120.00516 * 35.00503 * 9 8 2 29 29 H 0.96707 * 113.99735 * 300.00089 * 11 10 9 30 30 H 0.96999 * 120.00532 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3105 1.0969 0.0000 4 1 2.0155 2.0210 -0.0004 5 7 3.6399 0.6556 0.0006 6 6 4.8279 1.5128 0.0003 7 6 3.6398 -0.6531 0.0015 8 6 2.3090 -1.0947 0.0060 9 7 1.8807 -2.4359 0.0138 10 16 2.7483 -3.5773 0.8426 11 8 4.1617 -3.6459 0.2824 12 8 2.8007 -3.2257 2.2185 13 6 1.9704 -5.1485 0.6667 14 1 1.0665 -5.2412 0.0828 15 6 2.5156 -6.2596 1.2742 16 7 3.6165 -6.1468 1.9847 17 14 1.6906 -7.9252 1.0882 18 1 2.2369 -8.6175 -0.1065 19 1 1.9524 -8.7451 2.2984 20 1 0.2266 -7.7370 0.9251 21 1 -0.3633 -0.0005 -1.0277 22 1 -0.3633 0.8903 0.5134 23 1 -0.3633 -0.8898 0.5143 24 1 5.1220 1.7265 1.0278 25 1 5.6436 1.0032 -0.5127 26 1 4.6020 2.4466 -0.5147 27 1 4.5155 -1.2852 0.0025 28 1 1.0775 -2.6914 -0.4663 29 1 4.2023 -3.8814 -0.6547 30 1 4.0000 -6.9284 2.4125 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725551399.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:42:46 Heat of formation + Delta-G solvation = 66.408279 kcal Electronic energy + Delta-G solvation = -16519.796577 eV Core-core repulsion = 13675.348239 eV Total energy + Delta-G solvation = -2844.448338 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -40.27375 -35.63051 -34.03204 -33.63160 -32.96093 -32.12709 -29.05847 -28.33412 -25.88316 -24.35968 -21.03881 -19.58243 -18.61721 -18.00002 -17.23051 -16.20350 -15.18967 -14.83968 -14.38949 -14.14323 -14.01035 -13.64490 -12.98070 -12.92568 -12.66259 -12.38059 -11.86987 -11.68288 -11.60124 -11.26619 -11.18236 -10.83179 -10.66692 -10.40538 -9.63622 -9.36337 -9.16869 -8.65166 -8.58138 -6.64995 -6.59835 -5.12282 -2.75514 1.06619 2.75543 3.07341 3.16886 3.22459 3.77154 4.09614 4.34367 4.73333 4.95993 5.30119 5.43481 5.60495 5.63174 5.89122 5.96773 6.13896 6.23908 6.48012 6.58270 6.71956 7.14930 7.32318 7.43449 7.91272 8.11628 8.32066 8.54228 8.72898 8.90260 9.04104 10.35195 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.041632 B = 0.007054 C = 0.006345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.395836 B = 3968.673226 C = 4411.907591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.089 4.089 3 N -0.515 5.515 4 H 0.418 0.582 5 N -0.356 5.356 6 C 0.117 3.883 7 C -0.046 4.046 8 C 0.132 3.868 9 N -1.012 6.012 10 S 2.185 3.815 11 O -0.888 6.888 12 O -0.980 6.980 13 C -0.976 4.976 14 H 0.094 0.906 15 C 0.125 3.875 16 N -0.846 5.846 17 Si 0.897 3.103 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.264 1.264 21 H 0.050 0.950 22 H 0.045 0.955 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.083 0.917 26 H 0.066 0.934 27 H 0.166 0.834 28 H 0.372 0.628 29 H 0.415 0.585 30 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 11.604 -8.620 14.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.216 4.216 3 N -0.253 5.253 4 H 0.260 0.740 5 N -0.161 5.161 6 C -0.026 4.026 7 C -0.209 4.209 8 C 0.027 3.973 9 N -0.746 5.746 10 S 2.330 3.670 11 O -0.736 6.736 12 O -0.967 6.967 13 C -1.107 5.107 14 H 0.113 0.887 15 C -0.091 4.091 16 N -0.477 5.477 17 Si 0.721 3.279 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.189 1.189 21 H 0.068 0.932 22 H 0.064 0.936 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.183 0.817 28 H 0.203 0.797 29 H 0.274 0.726 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.943 11.082 -7.059 13.173 hybrid contribution -1.126 -1.290 -0.134 1.718 sum -0.183 9.792 -7.193 12.152 Atomic orbital electron populations 1.19769 0.88897 1.01414 1.00414 1.19362 0.91704 0.85239 1.25281 1.42944 0.93294 1.05913 1.83171 0.74019 1.43448 0.95862 1.04036 1.72782 1.21612 0.84730 0.94223 1.02037 1.21240 0.97699 0.83166 1.18754 1.17522 0.90686 0.86250 1.02820 1.58319 1.39735 1.11349 1.65165 1.40518 0.71720 0.75150 0.79607 1.85712 1.62950 1.90008 1.34891 1.92874 1.82814 1.82551 1.38427 1.30710 1.22361 1.15758 1.41858 0.88730 1.25003 0.93302 1.00207 0.90568 1.70016 1.18188 1.32489 1.27024 0.86510 0.80912 0.82135 0.78356 1.19462 1.20347 1.18853 0.93182 0.93642 0.91519 0.92848 0.89807 0.91533 0.81665 0.79689 0.72648 0.90594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 121. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.68 10.38 36.01 0.37 -0.31 16 2 C -0.09 -1.60 7.26 -81.67 -0.59 -2.19 16 3 N -0.51 -7.87 7.27 33.72 0.25 -7.63 16 4 H 0.42 4.81 8.96 -182.61 -1.64 3.17 16 5 N -0.36 -5.61 3.89 -67.80 -0.26 -5.88 16 6 C 0.12 1.20 11.42 59.85 0.68 1.89 16 7 C -0.05 -0.89 10.77 -17.22 -0.19 -1.07 16 8 C 0.13 2.71 6.70 -83.90 -0.56 2.15 16 9 N -1.01 -21.58 5.95 32.29 0.19 -21.39 16 10 S 2.18 57.30 4.37 -107.50 -0.47 56.83 16 11 O -0.89 -21.27 12.13 -58.38 -0.71 -21.98 16 12 O -0.98 -32.35 18.10 -58.38 -1.06 -33.40 16 13 C -0.98 -26.82 9.99 30.60 0.31 -26.51 16 14 H 0.09 2.40 7.81 -52.48 -0.41 1.98 16 15 C 0.12 3.53 5.46 -17.82 -0.10 3.43 16 16 N -0.85 -25.42 13.16 55.43 0.73 -24.69 16 17 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 18 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 21 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.08 0.73 8.13 -51.93 -0.42 0.31 16 26 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.17 3.14 6.87 -52.49 -0.36 2.77 16 28 H 0.37 6.99 8.96 -34.47 -0.31 6.69 16 29 H 0.41 7.44 9.03 67.38 0.61 8.05 16 30 H 0.28 7.82 8.31 -40.82 -0.34 7.48 16 LS Contribution 276.51 15.07 4.17 4.17 Total: -1.00 -40.22 276.51 -6.04 -46.26 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -3.78 Total: 14.59 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: -0.07 Total: -22.62 kcal Atomic # 7 Polarization: -60.48 SS G_CDS: 0.90 Total: -59.58 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: -1.76 Total: -55.38 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Atomic # 16 Polarization: 57.30 SS G_CDS: -0.47 Total: 56.83 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -40.22 -6.04 -46.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725551399.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.665 kcal (2) G-P(sol) polarization free energy of solvation -40.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds