Wall clock time and date at job start Mon Mar 30 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37099 * 119.99644 * 2 1 4 4 H 1.08004 * 119.99998 * 188.85781 * 3 2 1 5 5 C 1.38942 * 120.00375 * 8.86748 * 3 2 1 6 6 N 1.31419 * 120.00302 * 39.17439 * 5 3 2 7 7 Si 1.86805 * 119.99969 * 219.18197 * 5 3 2 8 8 H 1.48498 * 109.46990 * 179.97438 * 7 5 3 9 9 H 1.48504 * 109.46908 * 299.99305 * 7 5 3 10 10 H 1.48490 * 109.47415 * 59.99492 * 7 5 3 11 11 C 1.34769 * 120.00192 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00491 * 175.08423 * 11 2 1 13 13 C 1.50706 * 120.00002 * 355.08279 * 11 2 1 14 14 H 1.09004 * 110.70321 * 332.06200 * 13 11 2 15 15 C 1.51431 * 110.79451 * 208.73113 * 13 11 2 16 16 C 1.28871 * 117.49332 * 225.45344 * 15 13 11 17 17 C 1.51426 * 117.50410 * 359.97438 * 16 15 13 18 18 Cl 1.80296 * 110.79767 * 257.83625 * 17 16 15 19 19 S 1.83833 * 102.53956 * 16.29381 * 17 16 15 20 20 H 1.08996 * 109.47025 * 32.55618 * 1 2 3 21 21 H 1.09000 * 109.46529 * 152.55301 * 1 2 3 22 22 H 1.08993 * 109.46724 * 272.55741 * 1 2 3 23 23 H 0.97000 * 119.99220 * 357.57169 * 6 5 3 24 24 H 1.07998 * 121.25327 * 45.42939 * 15 13 11 25 25 H 1.08006 * 121.25137 * 180.02562 * 16 15 13 26 26 H 1.09007 * 110.79085 * 134.54793 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2209 1.1930 -0.1440 5 6 1.4682 2.3834 0.1855 6 7 0.4820 2.4500 1.0515 7 14 1.9527 3.8970 -0.7964 8 1 1.0772 5.0347 -0.4163 9 1 3.3677 4.2426 -0.5071 10 1 1.7980 3.6169 -2.2464 11 6 2.1390 -1.1671 0.0005 12 8 3.3486 -1.1691 -0.0895 13 6 1.3896 -2.4698 0.1130 14 1 0.4548 -2.3310 0.6561 15 6 2.2459 -3.5269 0.7782 16 6 2.2692 -4.6982 0.2413 17 6 1.4377 -4.9124 -1.0060 18 17 -0.0864 -5.7932 -0.6160 19 16 1.0826 -3.1924 -1.5492 20 1 -0.3633 0.8662 -0.5530 21 1 -0.3632 -0.9120 -0.4737 22 1 -0.3632 0.0459 1.0266 23 1 0.2073 1.6555 1.5355 24 1 2.8160 -3.3073 1.6687 25 1 2.8589 -5.4975 0.6655 26 1 2.0089 -5.4475 -1.7647 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725564933.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:34 Heat of formation + Delta-G solvation = -5.763466 kcal Electronic energy + Delta-G solvation = -13822.452593 eV Core-core repulsion = 11247.457972 eV Total energy + Delta-G solvation = -2574.994621 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.017 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.88643 -36.77457 -35.55665 -34.84434 -31.84894 -29.23718 -26.72961 -25.91587 -23.91431 -20.23352 -18.72711 -17.77214 -16.94067 -16.33990 -15.36691 -14.79634 -14.68794 -14.28088 -13.87113 -13.10503 -12.89128 -12.70878 -12.07170 -11.98200 -11.83315 -11.15176 -10.94512 -10.86432 -10.58409 -10.33933 -10.25282 -10.08384 -9.46454 -8.99003 -8.59803 -8.05722 -7.68218 -6.98931 -3.88825 1.32756 1.61856 1.95163 2.64201 3.21747 3.30478 3.49843 3.83881 4.05295 4.27663 4.53602 4.72359 4.87502 4.93657 5.35204 5.39062 5.65144 5.87042 6.16810 6.18558 6.41659 6.45480 7.62993 7.99594 8.34909 8.78038 9.24289 9.72244 10.33254 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.048602 B = 0.006155 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.965771 B = 4548.113966 C = 4700.777802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.428 5.428 3 C -0.416 4.416 4 H 0.104 0.896 5 C 0.017 3.983 6 N -0.847 5.847 7 Si 1.072 2.928 8 H -0.279 1.279 9 H -0.280 1.280 10 H -0.281 1.281 11 C 0.444 3.556 12 O -0.574 6.574 13 C -0.040 4.040 14 H 0.120 0.880 15 C -0.077 4.077 16 C -0.189 4.189 17 C 0.062 3.938 18 Cl -0.164 7.164 19 S -0.207 6.207 20 H 0.078 0.922 21 H 0.054 0.946 22 H 0.050 0.950 23 H 0.279 0.721 24 H 0.146 0.854 25 H 0.147 0.853 26 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.103 -11.254 -1.400 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.146 5.146 3 C -0.544 4.544 4 H 0.122 0.878 5 C -0.194 4.194 6 N -0.480 5.480 7 Si 0.897 3.103 8 H -0.204 1.204 9 H -0.206 1.206 10 H -0.207 1.207 11 C 0.231 3.769 12 O -0.459 6.459 13 C -0.171 4.171 14 H 0.138 0.862 15 C -0.097 4.097 16 C -0.208 4.208 17 C -0.093 4.093 18 Cl -0.138 7.138 19 S 0.020 5.980 20 H 0.096 0.904 21 H 0.072 0.928 22 H 0.069 0.931 23 H 0.091 0.909 24 H 0.164 0.836 25 H 0.164 0.836 26 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -2.352 -9.227 -2.730 9.906 hybrid contribution 0.315 -2.257 1.441 2.696 sum -2.037 -11.484 -1.289 11.734 Atomic orbital electron populations 1.21893 0.82294 1.01973 1.01218 1.43706 1.04636 1.05470 1.60788 1.20469 0.95970 0.82741 1.55179 0.87814 1.26453 0.95790 1.01717 0.95441 1.70896 1.29923 1.31841 1.15375 0.83462 0.76599 0.74093 0.76192 1.20432 1.20575 1.20747 1.18701 0.87528 0.82697 0.87970 1.90534 1.13271 1.85758 1.56347 1.23395 1.01941 0.97798 0.93927 0.86189 1.22583 0.95411 0.92133 0.99619 1.22533 1.01613 0.99213 0.97485 1.25598 0.88082 0.95645 0.99965 1.98756 1.39823 1.79688 1.95582 1.88417 1.90854 1.01307 1.17387 0.90373 0.92767 0.93128 0.90884 0.83640 0.83579 0.84194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.49 8.09 59.85 0.48 1.97 15 2 N -0.43 -10.68 3.01 -122.19 -0.37 -11.05 15 3 C -0.42 -11.43 9.24 -14.94 -0.14 -11.57 15 4 H 0.10 3.07 7.41 -52.48 -0.39 2.69 15 5 C 0.02 0.44 4.46 -17.47 -0.08 0.36 15 6 N -0.85 -22.27 12.71 55.50 0.71 -21.56 15 7 Si 1.07 22.99 30.05 -169.99 -5.11 17.88 15 8 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 9 H -0.28 -5.84 7.11 56.52 0.40 -5.44 15 10 H -0.28 -5.89 7.11 56.52 0.40 -5.48 15 11 C 0.44 10.65 6.84 -10.99 -0.08 10.58 15 12 O -0.57 -15.80 16.01 5.54 0.09 -15.71 15 13 C -0.04 -0.74 2.71 -28.67 -0.08 -0.82 15 14 H 0.12 2.06 6.79 -51.93 -0.35 1.71 15 15 C -0.08 -1.23 9.09 -35.10 -0.32 -1.55 15 16 C -0.19 -2.53 9.73 -35.10 -0.34 -2.87 15 17 C 0.06 0.84 4.49 36.36 0.16 1.00 15 18 Cl -0.16 -2.16 28.81 -51.86 -1.49 -3.66 15 19 S -0.21 -3.60 22.37 -107.50 -2.41 -6.01 15 20 H 0.08 1.73 6.94 -51.93 -0.36 1.37 15 21 H 0.05 1.00 6.39 -51.93 -0.33 0.67 15 22 H 0.05 1.02 6.80 -51.93 -0.35 0.67 15 23 H 0.28 7.21 6.08 -40.82 -0.25 6.96 15 24 H 0.15 2.19 8.06 -52.49 -0.42 1.77 15 25 H 0.15 1.51 8.06 -52.48 -0.42 1.09 15 26 H 0.14 1.60 8.14 -51.92 -0.42 1.18 15 LS Contribution 253.59 15.07 3.82 3.82 Total: -1.00 -30.26 253.59 -7.24 -37.50 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -2.10 Total: 1.68 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -0.38 Total: -2.89 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.34 Total: -32.61 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.09 Total: -15.71 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.11 Total: 17.88 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -2.41 Total: -6.01 kcal Atomic # 17 Polarization: -2.16 SS G_CDS: -1.49 Total: -3.66 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.26 -7.24 -37.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725564933.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.732 kcal (2) G-P(sol) polarization free energy of solvation -30.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds