Wall clock time and date at job start Mon Mar 30 2020 03:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.37099 * 119.99644 * 2 1 4 4 H 1.08004 * 119.99998 * 188.85781 * 3 2 1 5 5 C 1.38942 * 120.00375 * 8.86748 * 3 2 1 6 6 N 1.31419 * 120.00302 * 39.17439 * 5 3 2 7 7 Si 1.86805 * 119.99969 * 219.18197 * 5 3 2 8 8 H 1.48498 * 109.46990 * 179.97438 * 7 5 3 9 9 H 1.48504 * 109.46908 * 299.99305 * 7 5 3 10 10 H 1.48490 * 109.47415 * 59.99492 * 7 5 3 11 11 C 1.34769 * 120.00192 * 179.97438 * 2 1 3 12 12 O 1.21297 * 120.00491 * 175.08423 * 11 2 1 13 13 C 1.50706 * 120.00002 * 355.08279 * 11 2 1 14 14 H 1.09004 * 110.70321 * 332.06200 * 13 11 2 15 15 C 1.51431 * 110.79451 * 208.73113 * 13 11 2 16 16 C 1.28871 * 117.49332 * 225.45344 * 15 13 11 17 17 C 1.51426 * 117.50410 * 359.97438 * 16 15 13 18 18 Cl 1.80296 * 110.79767 * 257.83625 * 17 16 15 19 19 S 1.83833 * 102.53956 * 16.29381 * 17 16 15 20 20 H 1.08996 * 109.47025 * 32.55618 * 1 2 3 21 21 H 1.09000 * 109.46529 * 152.55301 * 1 2 3 22 22 H 1.08993 * 109.46724 * 272.55741 * 1 2 3 23 23 H 0.97000 * 119.99220 * 357.57169 * 6 5 3 24 24 H 1.07998 * 121.25327 * 45.42939 * 15 13 11 25 25 H 1.08006 * 121.25137 * 180.02562 * 16 15 13 26 26 H 1.09007 * 110.79085 * 134.54793 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.2209 1.1930 -0.1440 5 6 1.4682 2.3834 0.1855 6 7 0.4820 2.4500 1.0515 7 14 1.9527 3.8970 -0.7964 8 1 1.0772 5.0347 -0.4163 9 1 3.3677 4.2426 -0.5071 10 1 1.7980 3.6169 -2.2464 11 6 2.1390 -1.1671 0.0005 12 8 3.3486 -1.1691 -0.0895 13 6 1.3896 -2.4698 0.1130 14 1 0.4548 -2.3310 0.6561 15 6 2.2459 -3.5269 0.7782 16 6 2.2692 -4.6982 0.2413 17 6 1.4377 -4.9124 -1.0060 18 17 -0.0864 -5.7932 -0.6160 19 16 1.0826 -3.1924 -1.5492 20 1 -0.3633 0.8662 -0.5530 21 1 -0.3632 -0.9120 -0.4737 22 1 -0.3632 0.0459 1.0266 23 1 0.2073 1.6555 1.5355 24 1 2.8160 -3.3073 1.6687 25 1 2.8589 -5.4975 0.6655 26 1 2.0089 -5.4475 -1.7647 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725564933.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:34 Heat of formation + Delta-G solvation = -24.208051 kcal Electronic energy + Delta-G solvation = -13823.252410 eV Core-core repulsion = 11247.457972 eV Total energy + Delta-G solvation = -2575.794438 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.017 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.71610 -38.04971 -37.10806 -36.39545 -33.79925 -30.70130 -28.49489 -27.27089 -25.74743 -21.89506 -20.07409 -19.65448 -18.51031 -18.00185 -16.82935 -16.40822 -16.01558 -15.96171 -15.57996 -14.62399 -14.35153 -14.22942 -13.92035 -13.59290 -13.30460 -12.84494 -12.69493 -12.26476 -12.17988 -11.91993 -11.65617 -11.25170 -11.00098 -10.71293 -10.42037 -10.01781 -9.09912 -9.03646 -5.98225 0.04378 0.42133 0.62733 1.43742 1.52425 1.55076 1.82408 2.05012 2.30036 2.72663 2.91751 3.11699 3.49539 3.70787 3.86589 3.96948 4.20713 4.46764 4.56111 4.71200 5.05994 5.24976 5.65428 5.84693 6.39838 6.80183 7.27970 7.78992 8.29295 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.048602 B = 0.006155 C = 0.005955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.965771 B = 4548.113966 C = 4700.777802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.447 5.447 3 C -0.455 4.455 4 H 0.068 0.932 5 C -0.007 4.007 6 N -0.857 5.857 7 Si 1.116 2.884 8 H -0.269 1.269 9 H -0.273 1.273 10 H -0.273 1.273 11 C 0.443 3.557 12 O -0.617 6.617 13 C -0.032 4.032 14 H 0.131 0.869 15 C -0.113 4.113 16 C -0.157 4.157 17 C 0.072 3.928 18 Cl -0.149 7.149 19 S -0.241 6.241 20 H 0.063 0.937 21 H 0.079 0.921 22 H 0.057 0.943 23 H 0.274 0.726 24 H 0.149 0.851 25 H 0.188 0.812 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.649 -13.098 -1.749 13.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.166 5.166 3 C -0.582 4.582 4 H 0.086 0.914 5 C -0.215 4.215 6 N -0.490 5.490 7 Si 0.936 3.064 8 H -0.194 1.194 9 H -0.199 1.199 10 H -0.199 1.199 11 C 0.231 3.769 12 O -0.504 6.504 13 C -0.163 4.163 14 H 0.149 0.851 15 C -0.133 4.133 16 C -0.176 4.176 17 C -0.082 4.082 18 Cl -0.123 7.123 19 S -0.015 6.015 20 H 0.082 0.918 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.167 0.833 25 H 0.205 0.795 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -2.929 -11.073 -3.060 11.856 hybrid contribution 0.478 -1.914 1.528 2.495 sum -2.451 -12.986 -1.532 13.304 Atomic orbital electron populations 1.21881 0.80249 1.02585 1.01669 1.43863 1.06028 1.05247 1.61422 1.20298 0.94946 0.84764 1.58198 0.91354 1.27627 0.95134 1.03696 0.95019 1.70979 1.30481 1.31654 1.15883 0.82914 0.76783 0.71477 0.75248 1.19387 1.19864 1.19852 1.19599 0.87444 0.84254 0.85565 1.90488 1.15474 1.86971 1.57495 1.23137 1.02318 0.95717 0.95100 0.85110 1.22594 0.97265 0.92451 1.00998 1.22910 0.99738 0.99114 0.95879 1.25779 0.88554 0.93124 1.00779 1.98767 1.39187 1.78834 1.95511 1.88480 1.91038 1.05254 1.16719 0.91796 0.90200 0.92439 0.91446 0.83306 0.79522 0.81140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.39 8.09 127.77 1.03 4.42 15 2 N -0.45 -22.93 3.01 -658.89 -1.98 -24.91 15 3 C -0.46 -25.99 9.24 84.04 0.78 -25.21 15 4 H 0.07 4.30 7.41 -2.91 -0.02 4.27 15 5 C -0.01 -0.37 4.46 84.92 0.38 0.01 15 6 N -0.86 -45.53 12.71 21.66 0.28 -45.25 15 7 Si 1.12 46.76 30.05 68.60 2.06 48.82 15 8 H -0.27 -10.78 7.11 99.48 0.71 -10.07 15 9 H -0.27 -11.08 7.11 99.48 0.71 -10.37 15 10 H -0.27 -11.00 7.11 99.48 0.71 -10.30 15 11 C 0.44 21.68 6.84 87.66 0.60 22.28 15 12 O -0.62 -35.02 16.01 -3.08 -0.05 -35.07 15 13 C -0.03 -1.16 2.71 29.34 0.08 -1.08 15 14 H 0.13 4.35 6.79 -2.38 -0.02 4.34 15 15 C -0.11 -3.39 9.09 28.00 0.25 -3.14 15 16 C -0.16 -3.62 9.73 28.00 0.27 -3.35 15 17 C 0.07 1.68 4.49 71.47 0.32 2.00 15 18 Cl -0.15 -3.38 28.81 -2.72 -0.08 -3.46 15 19 S -0.24 -8.00 22.37 -56.49 -1.26 -9.26 15 20 H 0.06 2.87 6.94 -2.39 -0.02 2.85 15 21 H 0.08 2.91 6.39 -2.39 -0.02 2.89 15 22 H 0.06 2.33 6.80 -2.39 -0.02 2.31 15 23 H 0.27 14.39 6.08 -92.71 -0.56 13.83 15 24 H 0.15 4.33 8.06 -2.91 -0.02 4.31 15 25 H 0.19 2.86 8.06 -2.91 -0.02 2.84 15 26 H 0.17 3.09 8.14 -2.38 -0.02 3.07 15 Total: -1.00 -67.31 253.59 4.08 -63.23 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 1.41 Total: 9.98 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: 3.72 Total: -4.07 kcal Atomic # 7 Polarization: -68.46 SS G_CDS: -1.71 Total: -70.16 kcal Atomic # 8 Polarization: -35.02 SS G_CDS: -0.05 Total: -35.07 kcal Atomic # 14 Polarization: 46.76 SS G_CDS: 2.06 Total: 48.82 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.26 Total: -9.26 kcal Atomic # 17 Polarization: -3.38 SS G_CDS: -0.08 Total: -3.46 kcal Total: -67.31 4.08 -63.23 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725564933.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.017 kcal (2) G-P(sol) polarization free energy of solvation -67.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds