Wall clock time and date at job start Mon Mar 30 2020 03:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37105 * 119.99749 * 2 1 4 4 H 1.08005 * 119.99948 * 150.79047 * 3 2 1 5 5 C 1.38944 * 120.00111 * 330.79138 * 3 2 1 6 6 N 1.31411 * 120.00410 * 331.72479 * 5 3 2 7 7 Si 1.86802 * 120.00046 * 151.72020 * 5 3 2 8 8 H 1.48504 * 109.47410 * 270.00164 * 7 5 3 9 9 H 1.48495 * 109.47031 * 150.00224 * 7 5 3 10 10 H 1.48504 * 109.47115 * 30.00147 * 7 5 3 11 11 C 1.34776 * 120.00532 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00079 * 179.97438 * 11 2 1 13 13 C 1.50705 * 119.99655 * 0.02562 * 11 2 1 14 14 H 1.09002 * 110.70705 * 29.29281 * 13 11 2 15 15 C 1.51420 * 110.79234 * 152.63160 * 13 11 2 16 16 C 1.29213 * 117.28087 * 134.36729 * 15 13 11 17 17 C 1.51424 * 117.57138 * 0.32689 * 16 15 13 18 18 Cl 1.80312 * 110.79100 * 225.26652 * 17 16 15 19 19 S 1.83832 * 102.54401 * 343.52750 * 17 16 15 20 20 H 1.09003 * 109.47228 * 95.12696 * 1 2 3 21 21 H 1.09004 * 109.47532 * 215.12667 * 1 2 3 22 22 H 1.09001 * 109.47599 * 335.13159 * 1 2 3 23 23 H 0.97003 * 119.99326 * 353.78784 * 6 5 3 24 24 H 1.07996 * 121.25434 * 314.54158 * 15 13 11 25 25 H 1.08003 * 121.17610 * 180.13281 * 16 15 13 26 26 H 1.09003 * 110.79856 * 101.79238 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1504 1.1874 0.0000 4 1 3.1274 1.2469 0.4565 5 6 1.5881 2.3142 -0.5872 6 7 0.7373 2.1826 -1.5800 7 14 2.0416 4.0163 0.0347 8 1 1.1028 4.4154 1.1139 9 1 1.9547 4.9908 -1.0824 10 1 3.4278 3.9957 0.5671 11 6 2.1389 -1.1671 0.0005 12 8 3.3518 -1.1670 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.4228 -2.3616 -0.4987 15 6 2.2057 -3.5665 -0.6497 16 6 2.2584 -4.7065 -0.0438 17 6 1.4910 -4.8467 1.2540 18 17 2.4982 -5.6612 2.5084 19 16 1.1632 -3.0976 1.7149 20 1 -0.3634 -0.0918 -1.0236 21 1 -0.3634 -0.8405 0.5913 22 1 -0.3634 0.9324 0.4322 23 1 0.5701 1.3070 -1.9625 24 1 2.7270 -3.3981 -1.5804 25 1 2.8267 -5.5300 -0.4505 26 1 0.5574 -5.3865 1.0953 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725564934.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:35 Heat of formation + Delta-G solvation = -30.725374 kcal Electronic energy + Delta-G solvation = -13791.875526 eV Core-core repulsion = 11215.798475 eV Total energy + Delta-G solvation = -2576.077050 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 247.017 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.73172 -38.01343 -37.10375 -36.51634 -33.76335 -30.65506 -28.36702 -27.29562 -25.80839 -21.90897 -20.10684 -19.52893 -18.47635 -18.00231 -16.84260 -16.53666 -16.11947 -16.01619 -15.54372 -14.55739 -14.39573 -14.28571 -13.72661 -13.61790 -13.36681 -12.90720 -12.61624 -12.07418 -12.04193 -11.95157 -11.74055 -11.55338 -11.04973 -10.75360 -10.36734 -9.95567 -9.09059 -8.84786 -6.14907 -0.00471 0.40891 0.72356 1.30147 1.52906 1.55012 1.81993 2.06687 2.33248 2.74868 2.94752 3.08624 3.46949 3.74678 3.88755 3.94914 4.27017 4.52589 4.54796 4.77614 5.04585 5.20575 5.71083 5.83236 6.49526 6.78209 7.25910 7.75576 8.40097 Molecular weight = 247.02amu Principal moments of inertia in cm(-1) A = 0.050679 B = 0.005920 C = 0.005854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.359169 B = 4728.611054 C = 4781.837100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.457 5.457 3 C -0.432 4.432 4 H 0.057 0.943 5 C -0.015 4.015 6 N -0.877 5.877 7 Si 1.122 2.878 8 H -0.263 1.263 9 H -0.276 1.276 10 H -0.281 1.281 11 C 0.455 3.545 12 O -0.611 6.611 13 C -0.034 4.034 14 H 0.144 0.856 15 C -0.116 4.116 16 C -0.159 4.159 17 C 0.073 3.927 18 Cl -0.138 7.138 19 S -0.251 6.251 20 H 0.055 0.945 21 H 0.079 0.921 22 H 0.062 0.938 23 H 0.268 0.732 24 H 0.150 0.850 25 H 0.181 0.819 26 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.354 -13.130 2.304 14.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.177 5.177 3 C -0.560 4.560 4 H 0.075 0.925 5 C -0.220 4.220 6 N -0.510 5.510 7 Si 0.942 3.058 8 H -0.188 1.188 9 H -0.201 1.201 10 H -0.206 1.206 11 C 0.243 3.757 12 O -0.497 6.497 13 C -0.164 4.164 14 H 0.161 0.839 15 C -0.136 4.136 16 C -0.178 4.178 17 C -0.081 4.081 18 Cl -0.111 7.111 19 S -0.025 6.025 20 H 0.073 0.927 21 H 0.097 0.903 22 H 0.080 0.920 23 H 0.078 0.922 24 H 0.167 0.833 25 H 0.198 0.802 26 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -4.361 -11.038 3.315 12.322 hybrid contribution 0.766 -2.009 -0.916 2.337 sum -3.596 -13.046 2.399 13.744 Atomic orbital electron populations 1.21801 0.80142 1.02602 1.01290 1.43826 1.06168 1.04826 1.62873 1.20339 1.05902 0.88178 1.41603 0.92525 1.27723 0.94904 1.06849 0.92508 1.70851 1.34793 1.27362 1.18022 0.82825 0.76749 0.69877 0.76360 1.18754 1.20069 1.20603 1.20082 0.87690 0.84822 0.83084 1.90508 1.15565 1.87258 1.56339 1.23257 1.03205 0.95477 0.94496 0.83850 1.22593 0.97224 0.91704 1.02063 1.23015 1.00756 0.99928 0.94095 1.25841 0.99300 0.93449 0.89488 1.98758 1.73674 1.80686 1.58000 1.88568 1.91883 1.06897 1.15156 0.92667 0.90265 0.91958 0.92165 0.83274 0.80153 0.80483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 3.52 8.04 127.77 1.03 4.54 15 2 N -0.46 -23.33 2.82 -658.89 -1.86 -25.18 15 3 C -0.43 -24.81 8.95 84.04 0.75 -24.06 15 4 H 0.06 3.58 7.65 -2.91 -0.02 3.55 15 5 C -0.01 -0.79 4.64 84.93 0.39 -0.40 15 6 N -0.88 -47.53 12.84 21.66 0.28 -47.26 15 7 Si 1.12 47.35 30.00 68.60 2.06 49.40 15 8 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 9 H -0.28 -11.27 7.11 99.48 0.71 -10.56 15 10 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 11 C 0.46 22.26 6.86 87.66 0.60 22.86 15 12 O -0.61 -35.22 16.15 -3.06 -0.05 -35.27 15 13 C -0.03 -1.18 2.74 29.33 0.08 -1.10 15 14 H 0.14 4.31 6.78 -2.39 -0.02 4.29 15 15 C -0.12 -3.40 9.10 27.68 0.25 -3.14 15 16 C -0.16 -3.64 9.74 27.69 0.27 -3.37 15 17 C 0.07 1.68 4.50 71.47 0.32 2.00 15 18 Cl -0.14 -3.37 28.80 -2.72 -0.08 -3.45 15 19 S -0.25 -8.23 22.45 -56.49 -1.27 -9.50 15 20 H 0.05 2.18 7.03 -2.39 -0.02 2.16 15 21 H 0.08 2.74 6.71 -2.39 -0.02 2.72 15 22 H 0.06 2.73 7.44 -2.39 -0.02 2.71 15 23 H 0.27 14.54 6.62 -92.71 -0.61 13.92 15 24 H 0.15 4.29 8.06 -2.91 -0.02 4.27 15 25 H 0.18 3.00 8.06 -2.91 -0.02 2.97 15 26 H 0.18 2.78 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -69.76 255.45 4.13 -65.62 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.35 Total: 8.30 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: 3.70 Total: -2.68 kcal Atomic # 7 Polarization: -70.86 SS G_CDS: -1.58 Total: -72.44 kcal Atomic # 8 Polarization: -35.22 SS G_CDS: -0.05 Total: -35.27 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 2.06 Total: 49.40 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.27 Total: -9.50 kcal Atomic # 17 Polarization: -3.37 SS G_CDS: -0.08 Total: -3.45 kcal Total: -69.76 4.13 -65.62 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725564934.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.896 kcal (2) G-P(sol) polarization free energy of solvation -69.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds