Wall clock time and date at job start Mon Mar 30 2020 03:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99876 * 2 1 4 4 H 1.07995 * 120.00323 * 201.88394 * 3 2 1 5 5 C 1.38816 * 119.99843 * 21.89005 * 3 2 1 6 6 N 1.31616 * 120.00098 * 12.91631 * 5 3 2 7 7 Si 1.86797 * 119.99944 * 192.92176 * 5 3 2 8 8 H 1.48500 * 109.47482 * 94.81927 * 7 5 3 9 9 H 1.48501 * 109.46910 * 214.81715 * 7 5 3 10 10 H 1.48496 * 109.47137 * 334.81526 * 7 5 3 11 11 S 1.65594 * 120.00374 * 180.02562 * 2 1 3 12 12 O 1.52206 * 109.47141 * 1.82249 * 11 2 1 13 13 O 1.42102 * 109.47419 * 121.81834 * 11 2 1 14 14 C 1.76199 * 109.47270 * 241.82187 * 11 2 1 15 15 C 1.39867 * 125.89467 * 25.32533 * 14 11 2 16 16 C 1.35323 * 107.91812 * 180.26117 * 15 14 11 17 17 N 1.34941 * 107.74730 * 359.97438 * 16 15 14 18 18 H 0.96995 * 126.04197 * 180.02562 * 17 16 15 19 19 N 1.30832 * 125.90262 * 205.62841 * 14 11 2 20 20 C 1.46509 * 125.89594 * 359.74047 * 19 14 11 21 21 H 1.08994 * 109.46818 * 272.60418 * 1 2 3 22 22 H 1.08998 * 109.46940 * 32.61223 * 1 2 3 23 23 H 1.09003 * 109.46712 * 152.60896 * 1 2 3 24 24 H 0.97000 * 120.00152 * 180.02562 * 6 5 3 25 25 H 0.96700 * 113.99721 * 299.99889 * 12 11 2 26 26 H 1.07996 * 126.04420 * 0.20892 * 15 14 11 27 27 H 1.08001 * 126.12574 * 179.97438 * 16 15 14 28 28 H 1.08997 * 109.47036 * 89.99660 * 20 19 14 29 29 H 1.09002 * 109.46861 * 209.99849 * 20 19 14 30 30 H 1.09005 * 109.46588 * 329.99631 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1713 1.2197 -0.3486 5 6 1.5306 2.3447 0.4482 6 7 0.3920 2.2711 1.1042 7 14 2.3135 4.0087 0.1202 8 1 1.7325 4.5944 -1.1145 9 1 2.0517 4.9138 1.2680 10 1 3.7787 3.8407 -0.0536 11 16 2.2931 -1.4340 -0.0006 12 8 1.3047 -2.5906 -0.0468 13 8 3.1417 -1.4906 -1.1391 14 6 3.2661 -1.5511 1.4636 15 6 3.0058 -0.9026 2.6752 16 6 3.9827 -1.2426 3.5477 17 7 4.8307 -2.0771 2.9110 18 1 5.6259 -2.4819 3.2912 19 7 4.3599 -2.2551 1.6037 20 6 4.9844 -3.0866 0.5716 21 1 -0.3633 0.0467 1.0266 22 1 -0.3633 0.8656 -0.5539 23 1 -0.3633 -0.9125 -0.4728 24 1 -0.0408 3.0808 1.4171 25 1 0.6926 -2.6149 0.7014 26 1 2.1728 -0.2459 2.8783 27 1 4.0683 -0.9064 4.5705 28 1 5.6971 -2.4878 0.0047 29 1 5.5042 -3.9209 1.0426 30 1 4.2162 -3.4697 -0.1002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725566198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:03 Heat of formation + Delta-G solvation = 79.725753 kcal Electronic energy + Delta-G solvation = -17103.512456 eV Core-core repulsion = 14259.641607 eV Total energy + Delta-G solvation = -2843.870849 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.02095 -35.20165 -34.59149 -33.87637 -33.05321 -30.68883 -30.35010 -26.73403 -25.68161 -22.46976 -21.66407 -20.97970 -18.45485 -18.30159 -16.85228 -15.93056 -15.37136 -15.11950 -14.41150 -13.96339 -13.87822 -13.46628 -12.73537 -12.62940 -12.55142 -12.29989 -12.07117 -11.72332 -10.90961 -10.81165 -10.63223 -10.50632 -10.06581 -9.78299 -9.49044 -9.40825 -9.14222 -8.49317 -8.37833 -7.09527 -5.62871 -4.08020 -3.02853 1.50939 1.99069 3.18541 3.49008 3.55643 3.59647 4.21258 4.54899 4.62620 5.01794 5.13977 5.28830 5.41590 5.57711 5.79688 5.91344 6.20777 6.33552 6.75425 6.81895 7.34207 7.45083 7.60999 7.73427 7.86217 7.96993 8.06699 8.41045 9.17278 9.69176 10.18135 11.43273 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.010333 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.266258 B = 2709.050517 C = 3140.395972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.829 5.829 3 C -0.255 4.255 4 H 0.074 0.926 5 C 0.016 3.984 6 N -0.902 5.902 7 Si 0.890 3.110 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.278 1.278 11 S 1.971 4.029 12 O -0.951 6.951 13 O -0.984 6.984 14 C -0.256 4.256 15 C -0.179 4.179 16 C 0.076 3.924 17 N -0.522 5.522 18 H 0.413 0.587 19 N -0.279 5.279 20 C 0.087 3.913 21 H 0.040 0.960 22 H 0.048 0.952 23 H 0.003 0.997 24 H 0.251 0.749 25 H 0.399 0.601 26 H 0.168 0.832 27 H 0.184 0.816 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.658 -9.809 8.894 14.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.009 4.009 2 N -0.655 5.655 3 C -0.388 4.388 4 H 0.092 0.908 5 C -0.184 4.184 6 N -0.548 5.548 7 Si 0.720 3.280 8 H -0.217 1.217 9 H -0.218 1.218 10 H -0.203 1.203 11 S 2.062 3.938 12 O -0.801 6.801 13 O -0.969 6.969 14 C -0.472 4.472 15 C -0.209 4.209 16 C -0.068 4.068 17 N -0.236 5.236 18 H 0.258 0.742 19 N -0.066 5.066 20 C -0.055 4.055 21 H 0.058 0.942 22 H 0.067 0.933 23 H 0.021 0.979 24 H 0.061 0.939 25 H 0.258 0.742 26 H 0.186 0.814 27 H 0.200 0.800 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.229 -10.591 7.499 14.854 hybrid contribution 0.444 1.126 0.587 1.345 sum 7.673 -9.465 8.085 14.623 Atomic orbital electron populations 1.20842 0.83735 0.96576 0.99731 1.53057 1.09031 1.17982 1.85435 1.19243 0.97301 0.86353 1.35861 0.90813 1.24993 0.97139 0.97983 0.98273 1.70045 1.18434 1.26748 1.39526 0.86464 0.79208 0.84885 0.77405 1.21667 1.21818 1.20324 1.63906 0.72067 0.71988 0.85813 1.85782 1.60766 1.75950 1.57637 1.92737 1.66768 1.83386 1.53973 1.39938 0.86876 0.90227 1.30164 1.21200 1.03420 1.05290 0.90947 1.22140 0.94324 0.92225 0.98122 1.46549 1.24617 1.43879 1.08545 0.74249 1.48246 1.19490 1.40576 0.98292 1.22258 1.00756 0.93620 0.88838 0.94192 0.93274 0.97862 0.93905 0.74222 0.81447 0.79955 0.89388 0.91020 0.88302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 114. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.50 8.69 59.85 0.52 4.02 16 2 N -0.83 -21.97 3.35 -66.69 -0.22 -22.20 16 3 C -0.25 -7.32 9.62 -15.06 -0.14 -7.46 16 4 H 0.07 2.20 7.86 -52.49 -0.41 1.78 16 5 C 0.02 0.44 5.09 -17.43 -0.09 0.35 16 6 N -0.90 -25.53 10.65 55.49 0.59 -24.94 16 7 Si 0.89 22.27 29.57 -169.99 -5.03 17.24 16 8 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 S 1.97 46.60 4.52 -107.50 -0.49 46.11 16 12 O -0.95 -20.57 12.44 -58.38 -0.73 -21.30 16 13 O -0.98 -27.78 16.77 -58.38 -0.98 -28.75 16 14 C -0.26 -4.90 7.08 -17.37 -0.12 -5.02 16 15 C -0.18 -3.05 10.75 -40.01 -0.43 -3.48 16 16 C 0.08 0.94 11.99 -17.22 -0.21 0.74 16 17 N -0.52 -6.18 7.23 30.45 0.22 -5.96 16 18 H 0.41 3.15 8.96 -182.61 -1.64 1.52 16 19 N -0.28 -4.41 3.89 -67.00 -0.26 -4.67 16 20 C 0.09 1.18 10.62 59.85 0.64 1.82 16 21 H 0.04 0.97 7.52 -51.93 -0.39 0.58 16 22 H 0.05 1.34 7.09 -51.93 -0.37 0.98 16 23 H 0.00 0.07 7.15 -51.93 -0.37 -0.30 16 24 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.40 6.72 8.77 67.38 0.59 7.32 16 26 H 0.17 3.06 8.06 -52.49 -0.42 2.63 16 27 H 0.18 1.44 8.06 -52.49 -0.42 1.01 16 28 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.10 1.55 7.05 -51.93 -0.37 1.18 16 LS Contribution 268.71 15.07 4.05 4.05 Total: -1.00 -38.97 268.71 -6.46 -45.43 By element: Atomic # 1 Polarization: 7.80 SS G_CDS: -3.78 Total: 4.02 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 0.16 Total: -9.04 kcal Atomic # 7 Polarization: -58.09 SS G_CDS: 0.33 Total: -57.76 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -1.71 Total: -50.05 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.24 kcal Atomic # 16 Polarization: 46.60 SS G_CDS: -0.49 Total: 46.11 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -38.97 -6.46 -45.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725566198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.155 kcal (2) G-P(sol) polarization free energy of solvation -38.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds