Wall clock time and date at job start Mon Mar 30 2020 03:45:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99876 * 2 1 4 4 H 1.07995 * 120.00323 * 201.88394 * 3 2 1 5 5 C 1.38816 * 119.99843 * 21.89005 * 3 2 1 6 6 N 1.31616 * 120.00098 * 12.91631 * 5 3 2 7 7 Si 1.86797 * 119.99944 * 192.92176 * 5 3 2 8 8 H 1.48500 * 109.47482 * 94.81927 * 7 5 3 9 9 H 1.48501 * 109.46910 * 214.81715 * 7 5 3 10 10 H 1.48496 * 109.47137 * 334.81526 * 7 5 3 11 11 S 1.65594 * 120.00374 * 180.02562 * 2 1 3 12 12 O 1.52206 * 109.47141 * 1.82249 * 11 2 1 13 13 O 1.42102 * 109.47419 * 121.81834 * 11 2 1 14 14 C 1.76199 * 109.47270 * 241.82187 * 11 2 1 15 15 C 1.39867 * 125.89467 * 25.32533 * 14 11 2 16 16 C 1.35323 * 107.91812 * 180.26117 * 15 14 11 17 17 N 1.34941 * 107.74730 * 359.97438 * 16 15 14 18 18 H 0.96995 * 126.04197 * 180.02562 * 17 16 15 19 19 N 1.30832 * 125.90262 * 205.62841 * 14 11 2 20 20 C 1.46509 * 125.89594 * 359.74047 * 19 14 11 21 21 H 1.08994 * 109.46818 * 272.60418 * 1 2 3 22 22 H 1.08998 * 109.46940 * 32.61223 * 1 2 3 23 23 H 1.09003 * 109.46712 * 152.60896 * 1 2 3 24 24 H 0.97000 * 120.00152 * 180.02562 * 6 5 3 25 25 H 0.96700 * 113.99721 * 299.99889 * 12 11 2 26 26 H 1.07996 * 126.04420 * 0.20892 * 15 14 11 27 27 H 1.08001 * 126.12574 * 179.97438 * 16 15 14 28 28 H 1.08997 * 109.47036 * 89.99660 * 20 19 14 29 29 H 1.09002 * 109.46861 * 209.99849 * 20 19 14 30 30 H 1.09005 * 109.46588 * 329.99631 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1713 1.2197 -0.3486 5 6 1.5306 2.3447 0.4482 6 7 0.3920 2.2711 1.1042 7 14 2.3135 4.0087 0.1202 8 1 1.7325 4.5944 -1.1145 9 1 2.0517 4.9138 1.2680 10 1 3.7787 3.8407 -0.0536 11 16 2.2931 -1.4340 -0.0006 12 8 1.3047 -2.5906 -0.0468 13 8 3.1417 -1.4906 -1.1391 14 6 3.2661 -1.5511 1.4636 15 6 3.0058 -0.9026 2.6752 16 6 3.9827 -1.2426 3.5477 17 7 4.8307 -2.0771 2.9110 18 1 5.6259 -2.4819 3.2912 19 7 4.3599 -2.2551 1.6037 20 6 4.9844 -3.0866 0.5716 21 1 -0.3633 0.0467 1.0266 22 1 -0.3633 0.8656 -0.5539 23 1 -0.3633 -0.9125 -0.4728 24 1 -0.0408 3.0808 1.4171 25 1 0.6926 -2.6149 0.7014 26 1 2.1728 -0.2459 2.8783 27 1 4.0683 -0.9064 4.5705 28 1 5.6971 -2.4878 0.0047 29 1 5.5042 -3.9209 1.0426 30 1 4.2162 -3.4697 -0.1002 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725566198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:02 Heat of formation + Delta-G solvation = 44.343931 kcal Electronic energy + Delta-G solvation = -17105.046727 eV Core-core repulsion = 14259.641607 eV Total energy + Delta-G solvation = -2845.405120 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 247.078 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.67312 -36.59727 -36.32069 -35.35131 -34.51376 -32.23662 -32.20738 -28.08022 -27.58158 -24.20643 -23.05378 -22.45292 -19.79857 -19.74016 -18.57171 -17.66618 -16.82615 -16.73135 -15.82582 -15.78397 -15.48709 -14.82712 -14.33403 -14.17518 -13.88873 -13.80846 -13.66037 -13.17637 -12.78416 -12.70278 -12.41682 -12.18258 -11.97041 -11.67481 -11.06900 -10.82346 -10.69586 -10.44623 -9.79057 -8.86286 -7.61839 -5.64774 -4.98042 0.25295 0.51826 1.46966 1.52116 1.59243 1.76824 2.65691 2.86536 3.19320 3.45149 3.62767 3.94474 4.21791 4.25983 4.42350 4.61984 4.79332 4.82237 5.03485 5.36465 5.52971 5.73659 5.79013 5.92432 6.15612 6.31679 6.52280 6.90725 7.31394 7.73821 8.36597 9.41928 Molecular weight = 247.08amu Principal moments of inertia in cm(-1) A = 0.024789 B = 0.010333 C = 0.008914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.266258 B = 2709.050517 C = 3140.395972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.150 3.850 2 N -0.843 5.843 3 C -0.254 4.254 4 H 0.041 0.959 5 C -0.031 4.031 6 N -0.920 5.920 7 Si 0.932 3.068 8 H -0.301 1.301 9 H -0.280 1.280 10 H -0.279 1.279 11 S 1.844 4.156 12 O -0.940 6.940 13 O -1.069 7.069 14 C -0.181 4.181 15 C -0.235 4.235 16 C 0.157 3.843 17 N -0.476 5.476 18 H 0.448 0.552 19 N -0.263 5.263 20 C 0.065 3.935 21 H 0.036 0.964 22 H -0.001 1.001 23 H 0.012 0.988 24 H 0.246 0.754 25 H 0.413 0.587 26 H 0.160 0.840 27 H 0.258 0.742 28 H 0.087 0.913 29 H 0.138 0.862 30 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.242 -11.902 13.786 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.668 5.668 3 C -0.388 4.388 4 H 0.059 0.941 5 C -0.228 4.228 6 N -0.568 5.568 7 Si 0.762 3.238 8 H -0.229 1.229 9 H -0.206 1.206 10 H -0.204 1.204 11 S 1.913 4.087 12 O -0.793 6.793 13 O -1.055 7.055 14 C -0.392 4.392 15 C -0.264 4.264 16 C 0.007 3.993 17 N -0.185 5.185 18 H 0.299 0.701 19 N -0.034 5.034 20 C -0.076 4.076 21 H 0.054 0.946 22 H 0.018 0.982 23 H 0.031 0.969 24 H 0.056 0.944 25 H 0.273 0.727 26 H 0.177 0.823 27 H 0.274 0.726 28 H 0.106 0.894 29 H 0.156 0.844 30 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 11.140 -12.838 12.623 21.172 hybrid contribution 0.294 1.665 -0.474 1.756 sum 11.435 -11.173 12.150 20.080 Atomic orbital electron populations 1.20603 0.86207 0.94599 0.98514 1.54946 1.08095 1.18870 1.84845 1.19227 0.96173 0.89045 1.34325 0.94109 1.25475 0.98029 0.99820 0.99452 1.70141 1.19263 1.26515 1.40853 0.85809 0.78288 0.82692 0.77061 1.22881 1.20601 1.20416 1.80611 0.71757 0.70195 0.86108 1.85485 1.60657 1.75567 1.57577 1.92400 1.69153 1.83776 1.60215 1.43041 0.86730 0.84955 1.24467 1.21542 1.05522 1.07641 0.91658 1.23468 0.88341 0.87826 0.99676 1.47307 1.25100 1.40715 1.05392 0.70140 1.50262 1.17414 1.34873 1.00811 1.22703 1.00501 0.95394 0.88973 0.94551 0.98161 0.96949 0.94433 0.72730 0.82266 0.72584 0.89441 0.84388 0.89684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 59. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.15 8.26 8.69 127.77 1.11 9.37 16 2 N -0.84 -48.10 3.35 -364.90 -1.22 -49.33 16 3 C -0.25 -15.57 9.62 84.03 0.81 -14.76 16 4 H 0.04 2.64 7.86 -2.91 -0.02 2.61 16 5 C -0.03 -1.86 5.09 84.86 0.43 -1.43 16 6 N -0.92 -54.81 10.65 21.65 0.23 -54.58 16 7 Si 0.93 47.56 29.57 68.60 2.03 49.59 16 8 H -0.30 -15.72 7.11 99.48 0.71 -15.01 16 9 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 10 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 11 S 1.84 92.12 4.52 -56.49 -0.26 91.87 16 12 O -0.94 -42.93 12.44 -126.85 -1.58 -44.51 16 13 O -1.07 -65.15 16.77 -126.85 -2.13 -67.27 16 14 C -0.18 -6.51 7.08 85.24 0.60 -5.90 16 15 C -0.24 -6.93 10.75 21.99 0.24 -6.69 16 16 C 0.16 2.41 11.99 83.54 1.00 3.41 16 17 N -0.48 -6.78 7.23 -57.59 -0.42 -7.19 16 18 H 0.45 1.79 8.96 -213.34 -1.91 -0.12 16 19 N -0.26 -6.87 3.89 -365.87 -1.42 -8.30 16 20 C 0.07 1.49 10.62 127.77 1.36 2.85 16 21 H 0.04 1.92 7.52 -2.39 -0.02 1.90 16 22 H 0.00 -0.03 7.09 -2.39 -0.02 -0.05 16 23 H 0.01 0.61 7.15 -2.39 -0.02 0.60 16 24 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 25 H 0.41 14.65 8.77 -87.93 -0.77 13.88 16 26 H 0.16 5.45 8.06 -2.91 -0.02 5.43 16 27 H 0.26 0.74 8.06 -2.91 -0.02 0.72 16 28 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.14 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 2.56 7.05 -2.38 -0.02 2.54 16 Total: -1.00 -98.87 268.71 -0.73 -99.60 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -1.51 Total: 3.28 kcal Atomic # 6 Polarization: -18.70 SS G_CDS: 5.55 Total: -13.16 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -2.83 Total: -119.39 kcal Atomic # 8 Polarization: -108.07 SS G_CDS: -3.71 Total: -111.78 kcal Atomic # 14 Polarization: 47.56 SS G_CDS: 2.03 Total: 49.59 kcal Atomic # 16 Polarization: 92.12 SS G_CDS: -0.26 Total: 91.87 kcal Total: -98.87 -0.73 -99.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725566198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.940 kcal (2) G-P(sol) polarization free energy of solvation -98.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds