Wall clock time and date at job start Mon Mar 30 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46917 * 2 1 4 4 N 1.27948 * 119.99670 * 274.99469 * 3 2 1 5 5 Si 1.86799 * 120.00059 * 94.99921 * 3 2 1 6 6 H 1.48499 * 109.47235 * 89.99777 * 5 3 2 7 7 H 1.48501 * 109.46910 * 209.99842 * 5 3 2 8 8 H 1.48494 * 109.47155 * 329.99754 * 5 3 2 9 9 S 1.81397 * 109.46980 * 119.99687 * 2 1 3 10 10 O 1.52199 * 108.33509 * 177.79026 * 9 2 1 11 11 O 1.42099 * 114.65129 * 298.89580 * 9 2 1 12 12 N 1.65603 * 108.33291 * 60.00342 * 9 2 1 13 13 C 1.37843 * 120.00063 * 180.02562 * 12 9 2 14 14 N 1.30222 * 123.68374 * 180.02562 * 13 12 9 15 15 C 1.46506 * 126.87683 * 359.95024 * 14 13 12 16 16 C 1.47369 * 106.24026 * 180.21867 * 14 13 12 17 17 C 1.51600 * 103.32491 * 359.64346 * 16 14 13 18 18 N 1.29308 * 105.65202 * 0.35454 * 17 16 14 19 19 H 1.09002 * 109.46844 * 60.00707 * 1 2 3 20 20 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47210 * 300.00486 * 1 2 3 22 22 H 1.09000 * 109.47482 * 240.00076 * 2 1 3 23 23 H 0.96998 * 119.99192 * 179.97438 * 4 3 2 24 24 H 0.96703 * 113.99964 * 304.94229 * 10 9 2 25 25 H 0.96998 * 120.00102 * 359.97438 * 12 9 2 26 26 H 1.09001 * 109.47060 * 90.00740 * 15 14 13 27 27 H 1.09004 * 109.47073 * 210.00229 * 15 14 13 28 28 H 1.09000 * 109.47212 * 330.00311 * 15 14 13 29 29 H 1.08999 * 110.65130 * 118.21667 * 16 14 13 30 30 H 1.09007 * 110.64540 * 241.29396 * 16 14 13 31 31 H 1.08002 * 127.17444 * 180.12061 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1546 2.0561 -1.1039 5 14 2.4765 2.2545 1.6116 6 1 3.9092 2.0105 1.9167 7 1 2.2369 3.7154 1.4956 8 1 1.6366 1.7003 2.7035 9 16 2.1346 -0.8550 1.4812 10 8 3.6553 -0.8884 1.4275 11 8 1.7438 -0.2592 2.7105 12 7 1.5673 -2.4106 1.4527 13 6 1.8854 -3.2791 2.4748 14 7 1.4794 -4.5154 2.5246 15 6 0.6359 -5.2040 1.5444 16 6 2.0329 -5.0811 3.7678 17 6 2.8121 -3.9241 4.3616 18 7 2.6561 -2.9394 3.5382 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 2.4775 2.9708 -1.1038 24 1 4.0118 -1.2808 0.6188 25 1 1.0105 -2.7104 0.7172 26 1 1.2659 -5.6712 0.7875 27 1 0.0447 -5.9691 2.0477 28 1 -0.0303 -4.4842 1.0690 29 1 1.2320 -5.3920 4.4386 30 1 2.6972 -5.9168 3.5473 31 1 3.3764 -3.9217 5.2824 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725572220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:05 Heat of formation + Delta-G solvation = 68.978367 kcal Electronic energy + Delta-G solvation = -17296.605378 eV Core-core repulsion = 14438.612748 eV Total energy + Delta-G solvation = -2857.992630 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.32298 -36.85219 -36.53333 -36.35574 -35.37109 -34.95468 -32.09043 -29.74350 -28.88369 -24.90519 -23.96614 -22.03595 -20.21211 -19.93338 -19.00171 -18.36176 -18.00918 -17.51320 -16.63971 -16.13817 -15.70920 -15.43518 -15.23987 -14.87551 -14.78634 -14.05930 -13.94742 -13.87754 -13.82500 -13.38655 -12.82929 -12.49880 -12.14353 -12.08476 -11.95452 -11.64279 -11.52206 -10.74803 -10.45058 -10.20388 -9.76065 -9.21276 -5.84602 -0.98442 0.81125 1.39602 1.46347 1.62686 1.90588 1.98874 2.27005 2.29343 2.66425 2.72671 3.05112 3.27161 3.42485 3.58169 3.79175 4.03204 4.07769 4.21993 4.28015 4.42924 4.77318 5.04506 5.10179 5.18209 5.26857 5.66476 5.72303 5.78246 5.85619 6.42899 6.67488 7.50014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.559 4.559 3 C 0.047 3.953 4 N -0.653 5.653 5 Si 0.812 3.188 6 H -0.235 1.235 7 H -0.258 1.258 8 H -0.154 1.154 9 S 1.784 4.216 10 O -0.889 6.889 11 O -0.931 6.931 12 N -0.852 5.852 13 C 0.588 3.412 14 N -0.581 5.581 15 C 0.084 3.916 16 C 0.018 3.982 17 C 0.215 3.785 18 N -0.469 5.469 19 H 0.043 0.957 20 H 0.051 0.949 21 H 0.047 0.953 22 H 0.102 0.898 23 H 0.322 0.678 24 H 0.413 0.587 25 H 0.374 0.626 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.142 0.858 30 H 0.137 0.863 31 H 0.230 0.770 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.987 -16.559 3.003 16.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.651 4.651 3 C -0.203 4.203 4 N -0.266 5.266 5 Si 0.629 3.371 6 H -0.158 1.158 7 H -0.183 1.183 8 H -0.074 1.074 9 S 1.868 4.132 10 O -0.740 6.740 11 O -0.921 6.921 12 N -0.566 5.566 13 C 0.229 3.771 14 N -0.289 5.289 15 C -0.057 4.057 16 C -0.108 4.108 17 C 0.008 3.992 18 N -0.180 5.180 19 H 0.062 0.938 20 H 0.070 0.930 21 H 0.067 0.933 22 H 0.120 0.880 23 H 0.137 0.863 24 H 0.271 0.729 25 H 0.208 0.792 26 H 0.100 0.900 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.159 0.841 30 H 0.154 0.846 31 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.608 -14.558 3.392 14.960 hybrid contribution -0.211 0.200 -0.632 0.696 sum -0.819 -14.358 2.760 14.643 Atomic orbital electron populations 1.21001 0.93065 1.00450 1.01177 1.30422 1.02840 1.00290 1.31500 1.29884 0.91708 0.98632 1.00067 1.68383 1.13215 1.12948 1.32082 0.87522 0.85837 0.80707 0.83051 1.15795 1.18279 1.07411 1.76961 0.72089 0.79808 0.84371 1.85175 1.56668 1.82505 1.49636 1.92882 1.76379 1.76545 1.46329 1.65817 1.46430 1.26211 1.18134 1.24796 0.83729 0.81465 0.87064 1.48176 1.45876 1.12370 1.22509 1.22013 0.94317 0.98452 0.90962 1.23191 1.01086 0.99402 0.87115 1.28456 0.87345 0.86928 0.96482 1.70454 1.14615 1.30925 1.02026 0.93816 0.93018 0.93349 0.87985 0.86272 0.72912 0.79168 0.89964 0.88704 0.88793 0.84079 0.84555 0.75421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.39 9.18 37.16 0.34 -0.05 16 2 C -0.56 -2.71 3.40 -27.88 -0.09 -2.81 16 3 C 0.05 0.35 4.98 -13.89 -0.07 0.28 16 4 N -0.65 -5.15 13.82 56.23 0.78 -4.37 16 5 Si 0.81 7.24 25.88 -169.99 -4.40 2.84 16 6 H -0.23 -2.37 7.11 56.52 0.40 -1.96 16 7 H -0.26 -2.22 7.11 56.52 0.40 -1.82 16 8 H -0.15 -1.67 5.21 56.52 0.29 -1.38 16 9 S 1.78 8.57 3.03 -107.50 -0.33 8.24 16 10 O -0.89 -4.53 12.97 -58.56 -0.76 -5.29 16 11 O -0.93 -9.62 13.82 -58.56 -0.81 -10.42 16 12 N -0.85 0.68 5.86 29.83 0.17 0.85 16 13 C 0.59 -1.13 8.23 -322.28 -2.65 -3.78 16 14 N -0.58 3.74 3.31 -183.94 -0.61 3.13 16 15 C 0.08 -0.76 10.97 59.85 0.66 -0.10 16 16 C 0.02 -0.17 7.67 -4.28 -0.03 -0.21 16 17 C 0.22 -1.50 12.57 -12.90 -0.16 -1.67 16 18 N -0.47 0.24 10.13 -10.72 -0.11 0.14 16 19 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 20 H 0.05 0.02 7.72 -51.93 -0.40 -0.38 16 21 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 22 H 0.10 0.32 8.14 -51.92 -0.42 -0.11 16 23 H 0.32 2.08 8.23 -40.82 -0.34 1.74 16 24 H 0.41 -0.08 9.03 67.38 0.61 0.53 16 25 H 0.37 -1.59 7.24 -34.47 -0.25 -1.84 16 26 H 0.08 -0.81 8.14 -51.93 -0.42 -1.23 16 27 H 0.09 -1.00 8.14 -51.93 -0.42 -1.42 16 28 H 0.09 -0.86 7.22 -51.93 -0.38 -1.23 16 29 H 0.14 -1.63 8.14 -51.93 -0.42 -2.06 16 30 H 0.14 -1.63 8.14 -51.93 -0.42 -2.05 16 31 H 0.23 -2.57 8.06 -52.49 -0.42 -2.99 16 LS Contribution 269.75 15.07 4.07 4.07 Total: 0.00 -18.66 269.75 -7.05 -25.70 By element: Atomic # 1 Polarization: -13.53 SS G_CDS: -3.04 Total: -16.57 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -2.01 Total: -8.32 kcal Atomic # 7 Polarization: -0.48 SS G_CDS: 0.23 Total: -0.25 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -1.57 Total: -15.71 kcal Atomic # 14 Polarization: 7.24 SS G_CDS: -4.40 Total: 2.84 kcal Atomic # 16 Polarization: 8.57 SS G_CDS: -0.33 Total: 8.24 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -18.66 -7.05 -25.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725572220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.683 kcal (2) G-P(sol) polarization free energy of solvation -18.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds