Wall clock time and date at job start Mon Mar 30 2020 03:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50703 * 109.46917 * 2 1 4 4 N 1.27948 * 119.99670 * 274.99469 * 3 2 1 5 5 Si 1.86799 * 120.00059 * 94.99921 * 3 2 1 6 6 H 1.48499 * 109.47235 * 89.99777 * 5 3 2 7 7 H 1.48501 * 109.46910 * 209.99842 * 5 3 2 8 8 H 1.48494 * 109.47155 * 329.99754 * 5 3 2 9 9 S 1.81397 * 109.46980 * 119.99687 * 2 1 3 10 10 O 1.52199 * 108.33509 * 177.79026 * 9 2 1 11 11 O 1.42099 * 114.65129 * 298.89580 * 9 2 1 12 12 N 1.65603 * 108.33291 * 60.00342 * 9 2 1 13 13 C 1.37843 * 120.00063 * 180.02562 * 12 9 2 14 14 N 1.30222 * 123.68374 * 180.02562 * 13 12 9 15 15 C 1.46506 * 126.87683 * 359.95024 * 14 13 12 16 16 C 1.47369 * 106.24026 * 180.21867 * 14 13 12 17 17 C 1.51600 * 103.32491 * 359.64346 * 16 14 13 18 18 N 1.29308 * 105.65202 * 0.35454 * 17 16 14 19 19 H 1.09002 * 109.46844 * 60.00707 * 1 2 3 20 20 H 1.09000 * 109.46785 * 179.97438 * 1 2 3 21 21 H 1.08991 * 109.47210 * 300.00486 * 1 2 3 22 22 H 1.09000 * 109.47482 * 240.00076 * 2 1 3 23 23 H 0.96998 * 119.99192 * 179.97438 * 4 3 2 24 24 H 0.96703 * 113.99964 * 304.94229 * 10 9 2 25 25 H 0.96998 * 120.00102 * 359.97438 * 12 9 2 26 26 H 1.09001 * 109.47060 * 90.00740 * 15 14 13 27 27 H 1.09004 * 109.47073 * 210.00229 * 15 14 13 28 28 H 1.09000 * 109.47212 * 330.00311 * 15 14 13 29 29 H 1.08999 * 110.65130 * 118.21667 * 16 14 13 30 30 H 1.09007 * 110.64540 * 241.29396 * 16 14 13 31 31 H 1.08002 * 127.17444 * 180.12061 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.1546 2.0561 -1.1039 5 14 2.4765 2.2545 1.6116 6 1 3.9092 2.0105 1.9167 7 1 2.2369 3.7154 1.4956 8 1 1.6366 1.7003 2.7035 9 16 2.1346 -0.8550 1.4812 10 8 3.6553 -0.8884 1.4275 11 8 1.7438 -0.2592 2.7105 12 7 1.5673 -2.4106 1.4527 13 6 1.8854 -3.2791 2.4748 14 7 1.4794 -4.5154 2.5246 15 6 0.6359 -5.2040 1.5444 16 6 2.0329 -5.0811 3.7678 17 6 2.8121 -3.9241 4.3616 18 7 2.6561 -2.9394 3.5382 19 1 -0.3633 0.5137 -0.8901 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 1.8934 -0.5138 -0.8900 23 1 2.4775 2.9708 -1.1038 24 1 4.0118 -1.2808 0.6188 25 1 1.0105 -2.7104 0.7172 26 1 1.2659 -5.6712 0.7875 27 1 0.0447 -5.9691 2.0477 28 1 -0.0303 -4.4842 1.0690 29 1 1.2320 -5.3920 4.4386 30 1 2.6972 -5.9168 3.5473 31 1 3.3764 -3.9217 5.2824 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725572220.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:44:05 Heat of formation + Delta-G solvation = 55.471340 kcal Electronic energy + Delta-G solvation = -17297.191087 eV Core-core repulsion = 14438.612748 eV Total energy + Delta-G solvation = -2858.578339 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.97438 -37.06417 -36.96048 -36.04390 -35.67864 -34.69999 -32.40256 -29.24388 -28.37630 -25.21749 -23.49945 -21.77350 -20.45829 -20.09822 -18.80804 -18.38322 -17.84624 -17.51758 -16.26266 -16.09405 -15.71872 -15.49370 -15.17714 -14.83193 -14.47724 -14.19961 -14.17009 -13.76961 -13.47517 -13.30424 -13.17790 -12.86111 -12.64649 -12.26877 -11.88876 -11.71706 -11.25536 -11.20377 -10.80852 -10.10629 -9.98217 -9.74647 -5.98193 -0.53573 0.76736 1.00942 1.19335 1.29112 1.62771 1.75685 1.98359 2.25810 2.71175 2.94829 3.26660 3.78613 3.91130 4.18893 4.25090 4.36943 4.53662 4.56918 4.75114 4.84959 4.86390 4.90928 4.94053 5.10312 5.36581 5.47535 5.55285 5.63823 6.10212 6.65328 6.87499 6.99183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.564 4.564 3 C 0.056 3.944 4 N -0.664 5.664 5 Si 0.828 3.172 6 H -0.258 1.258 7 H -0.261 1.261 8 H -0.189 1.189 9 S 1.791 4.209 10 O -0.909 6.909 11 O -1.004 7.004 12 N -0.880 5.880 13 C 0.591 3.409 14 N -0.564 5.564 15 C 0.070 3.930 16 C 0.016 3.984 17 C 0.245 3.755 18 N -0.557 5.557 19 H 0.030 0.970 20 H 0.087 0.913 21 H 0.025 0.975 22 H 0.118 0.882 23 H 0.324 0.676 24 H 0.427 0.573 25 H 0.397 0.603 26 H 0.099 0.901 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.178 0.822 30 H 0.182 0.818 31 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 -20.595 3.265 20.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.654 4.654 3 C -0.194 4.194 4 N -0.278 5.278 5 Si 0.649 3.351 6 H -0.183 1.183 7 H -0.186 1.186 8 H -0.110 1.110 9 S 1.868 4.132 10 O -0.762 6.762 11 O -0.994 6.994 12 N -0.598 5.598 13 C 0.232 3.768 14 N -0.267 5.267 15 C -0.070 4.070 16 C -0.108 4.108 17 C 0.044 3.956 18 N -0.272 5.272 19 H 0.049 0.951 20 H 0.105 0.895 21 H 0.044 0.956 22 H 0.136 0.864 23 H 0.140 0.860 24 H 0.287 0.713 25 H 0.232 0.768 26 H 0.117 0.883 27 H 0.138 0.862 28 H 0.111 0.889 29 H 0.195 0.805 30 H 0.199 0.801 31 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -0.902 -18.719 3.701 19.103 hybrid contribution -0.206 0.862 -0.337 0.949 sum -1.108 -17.857 3.364 18.205 Atomic orbital electron populations 1.21014 0.92925 1.02234 0.99342 1.30635 1.02838 0.98318 1.33564 1.29898 0.91295 0.99929 0.98254 1.68433 1.14141 1.13406 1.31815 0.87317 0.83568 0.80244 0.83966 1.18289 1.18612 1.10976 1.80946 0.71398 0.77744 0.83081 1.85157 1.57536 1.82716 1.50834 1.92704 1.77996 1.77772 1.50938 1.63362 1.50127 1.26823 1.19476 1.23823 0.82617 0.82251 0.88134 1.48335 1.44227 1.10690 1.23445 1.22411 0.94537 0.98822 0.91186 1.23674 1.02325 0.98999 0.85757 1.29421 0.84598 0.86202 0.95378 1.70454 1.18290 1.34190 1.04256 0.95054 0.89470 0.95558 0.86377 0.85958 0.71259 0.76793 0.88252 0.86216 0.88883 0.80500 0.80087 0.71948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.18 71.98 0.66 -0.26 16 2 C -0.56 -6.52 3.40 29.85 0.10 -6.41 16 3 C 0.06 1.00 4.98 88.68 0.44 1.44 16 4 N -0.66 -11.60 13.82 24.11 0.33 -11.27 16 5 Si 0.83 18.02 25.88 68.60 1.78 19.79 16 6 H -0.26 -6.36 7.11 99.48 0.71 -5.66 16 7 H -0.26 -5.34 7.11 99.48 0.71 -4.63 16 8 H -0.19 -5.15 5.21 99.48 0.52 -4.63 16 9 S 1.79 21.71 3.03 -56.49 -0.17 21.54 16 10 O -0.91 -11.75 12.97 -126.68 -1.64 -13.39 16 11 O -1.00 -24.91 13.82 -126.68 -1.75 -26.66 16 12 N -0.88 0.76 5.86 -59.53 -0.35 0.41 16 13 C 0.59 -2.54 8.23 261.30 2.15 -0.39 16 14 N -0.56 8.82 3.31 -735.86 -2.44 6.38 16 15 C 0.07 -1.49 10.97 127.77 1.40 -0.09 16 16 C 0.02 -0.39 7.67 85.75 0.66 0.27 16 17 C 0.25 -4.00 12.57 88.77 1.12 -2.89 16 18 N -0.56 0.55 10.13 -187.83 -1.90 -1.35 16 19 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 20 H 0.09 0.09 7.72 -2.39 -0.02 0.07 16 21 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 22 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.32 4.80 8.23 -92.71 -0.76 4.04 16 24 H 0.43 0.77 9.03 -87.93 -0.79 -0.03 16 25 H 0.40 -3.36 7.24 -96.75 -0.70 -4.06 16 26 H 0.10 -2.30 8.14 -2.39 -0.02 -2.32 16 27 H 0.12 -3.04 8.14 -2.38 -0.02 -3.06 16 28 H 0.09 -1.89 7.22 -2.39 -0.02 -1.90 16 29 H 0.18 -5.09 8.14 -2.39 -0.02 -5.11 16 30 H 0.18 -5.43 8.14 -2.38 -0.02 -5.45 16 31 H 0.26 -6.70 8.06 -2.91 -0.02 -6.72 16 Total: 0.00 -50.73 269.75 -0.14 -50.87 By element: Atomic # 1 Polarization: -37.47 SS G_CDS: -0.52 Total: -37.99 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 6.53 Total: -8.33 kcal Atomic # 7 Polarization: -1.47 SS G_CDS: -4.36 Total: -5.83 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -3.39 Total: -40.05 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: 1.78 Total: 19.79 kcal Atomic # 16 Polarization: 21.71 SS G_CDS: -0.17 Total: 21.54 kcal Total: -50.73 -0.14 -50.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725572220.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.338 kcal (2) G-P(sol) polarization free energy of solvation -50.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds