Wall clock time and date at job start Mon Mar 30 2020 03:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.50706 * 109.47163 * 185.00275 * 3 2 1 5 5 N 1.27936 * 120.00444 * 124.72414 * 4 3 2 6 6 Si 1.86803 * 119.99620 * 304.99983 * 4 3 2 7 7 H 1.48501 * 109.47085 * 89.99884 * 6 4 3 8 8 H 1.48497 * 109.46789 * 209.99894 * 6 4 3 9 9 H 1.48495 * 109.47179 * 329.99687 * 6 4 3 10 10 S 1.81405 * 109.47227 * 65.00126 * 3 2 1 11 11 O 1.52194 * 108.33139 * 297.78618 * 10 3 2 12 12 O 1.42097 * 114.64792 * 58.89433 * 10 3 2 13 13 N 1.65598 * 108.33030 * 179.97438 * 10 3 2 14 14 N 1.23274 * 122.50391 * 359.72057 * 13 10 3 15 15 C 1.47314 * 107.95143 * 179.86035 * 14 13 10 16 16 C 1.51920 * 102.79304 * 0.35933 * 15 14 13 17 17 N 1.37146 * 128.20047 * 179.77315 * 16 15 14 18 18 C 1.33564 * 122.49755 * 179.97438 * 13 10 3 19 19 H 1.09001 * 109.47320 * 59.99889 * 1 2 3 20 20 H 1.08998 * 109.46664 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46897 * 299.99628 * 1 2 3 22 22 H 1.08999 * 109.47379 * 240.00388 * 2 1 3 23 23 H 1.09001 * 109.47320 * 120.00111 * 2 1 3 24 24 H 1.09004 * 109.47644 * 304.99906 * 3 2 1 25 25 H 0.97004 * 119.99655 * 359.97438 * 5 4 3 26 26 H 0.96707 * 114.00360 * 304.93900 * 11 10 3 27 27 H 1.09008 * 110.92301 * 241.95614 * 15 14 13 28 28 H 1.08997 * 110.57259 * 118.60538 * 15 14 13 29 29 H 0.97004 * 119.99603 * 180.02562 * 17 16 15 30 30 H 0.96993 * 120.00298 * 0.02562 * 17 16 15 31 31 H 1.08000 * 124.66996 * 0.04500 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5419 1.4444 -0.1239 5 7 4.1054 2.1025 -1.0653 6 14 4.5806 0.4795 1.0925 7 1 4.7885 -0.8992 0.5816 8 1 5.8955 1.1487 1.2606 9 1 3.8834 0.4221 2.4024 10 16 1.5601 2.2535 1.5501 11 8 0.0402 2.2866 1.6224 12 8 2.0499 1.6227 2.7253 13 7 2.1256 3.8097 1.5205 14 7 2.7635 4.2646 0.5688 15 6 3.1010 5.6652 0.8764 16 6 2.4901 5.8638 2.2531 17 7 2.5042 6.9922 3.0325 18 6 1.9288 4.6640 2.5281 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6054 1.9816 -0.8418 25 1 3.5658 2.6000 -1.6996 26 1 -0.3811 2.7019 0.8574 27 1 2.6489 6.3427 0.1520 28 1 4.1820 5.8001 0.9106 29 1 2.0728 6.9869 3.9014 30 1 2.9456 7.7954 2.7151 31 1 1.3959 4.4290 3.4376 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725575014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:00 Heat of formation + Delta-G solvation = 60.075083 kcal Electronic energy + Delta-G solvation = -17601.250304 eV Core-core repulsion = 14742.871598 eV Total energy + Delta-G solvation = -2858.378705 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.60790 -37.55775 -37.30076 -37.11951 -36.08147 -33.96836 -31.79377 -30.99575 -27.91611 -24.35317 -22.86120 -22.24284 -21.37959 -20.42235 -19.99975 -18.13651 -17.90857 -17.48203 -17.12866 -16.63751 -16.53165 -15.62549 -15.23151 -14.73465 -14.39917 -13.80776 -13.74780 -13.56893 -13.43087 -13.24946 -12.98302 -12.69114 -12.55341 -12.24577 -12.03201 -11.85198 -11.69153 -11.26309 -11.11040 -10.17952 -9.58486 -9.41169 -6.70972 -0.95644 1.00423 1.22705 1.57052 1.61346 1.94078 2.06596 2.20883 2.30450 2.39302 2.64482 3.19245 3.61140 3.73184 3.74433 4.00084 4.12702 4.24693 4.33306 4.45381 4.76728 4.83681 4.97308 5.14000 5.28773 5.37807 5.54143 5.57075 5.63116 5.86009 6.07809 6.48517 7.45202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.098 4.098 3 C -0.565 4.565 4 C 0.015 3.985 5 N -0.639 5.639 6 Si 0.988 3.012 7 H -0.249 1.249 8 H -0.249 1.249 9 H -0.202 1.202 10 S 1.757 4.243 11 O -0.889 6.889 12 O -0.902 6.902 13 N -0.268 5.268 14 N -0.176 5.176 15 C -0.037 4.037 16 C 0.201 3.799 17 N -0.803 5.803 18 C -0.200 4.200 19 H 0.056 0.944 20 H 0.057 0.943 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.108 0.892 25 H 0.322 0.678 26 H 0.420 0.580 27 H 0.157 0.843 28 H 0.167 0.833 29 H 0.418 0.582 30 H 0.416 0.584 31 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 11.343 -0.451 11.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.137 4.137 3 C -0.668 4.668 4 C -0.232 4.232 5 N -0.252 5.252 6 Si 0.803 3.197 7 H -0.173 1.173 8 H -0.173 1.173 9 H -0.123 1.123 10 S 1.842 4.158 11 O -0.742 6.742 12 O -0.891 6.891 13 N -0.168 5.168 14 N -0.066 5.066 15 C -0.169 4.169 16 C 0.073 3.927 17 N -0.339 5.339 18 C -0.344 4.344 19 H 0.075 0.925 20 H 0.076 0.924 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.079 0.921 24 H 0.127 0.873 25 H 0.138 0.862 26 H 0.280 0.720 27 H 0.173 0.827 28 H 0.184 0.816 29 H 0.250 0.750 30 H 0.246 0.754 31 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 0.402 9.810 0.191 9.820 hybrid contribution -1.711 0.741 -0.282 1.886 sum -1.309 10.551 -0.091 10.632 Atomic orbital electron populations 1.22203 0.95604 1.02705 1.03170 1.21116 0.95873 0.94576 1.02174 1.29848 1.00854 1.06275 1.29815 1.30487 0.95594 0.97176 0.99928 1.69326 1.44051 1.07669 1.04148 0.84747 0.78421 0.78141 0.78410 1.17347 1.17257 1.12320 1.75423 0.72248 0.84146 0.84004 1.85225 1.54208 1.80837 1.53954 1.93018 1.74073 1.75749 1.46242 1.64509 1.13994 1.32027 1.06302 1.78438 1.02127 1.06730 1.19349 1.23953 1.05038 0.95325 0.92608 1.21490 0.91022 0.87776 0.92385 1.41518 1.59840 1.11214 1.21288 1.23036 1.17881 0.91707 1.01787 0.92469 0.92436 0.90383 0.92322 0.92136 0.87346 0.86153 0.71995 0.82661 0.81643 0.74984 0.75382 0.80381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.42 9.54 37.16 0.35 -0.07 16 2 C -0.10 -0.35 4.82 -26.73 -0.13 -0.48 16 3 C -0.56 -1.39 2.30 -27.88 -0.06 -1.46 16 4 C 0.01 0.06 4.02 -13.90 -0.06 0.00 16 5 N -0.64 -2.20 13.23 56.22 0.74 -1.45 16 6 Si 0.99 5.04 26.89 -169.99 -4.57 0.47 16 7 H -0.25 -1.26 7.11 56.52 0.40 -0.86 16 8 H -0.25 -1.26 7.11 56.52 0.40 -0.86 16 9 H -0.20 -1.37 5.49 56.52 0.31 -1.06 16 10 S 1.76 5.44 3.98 -107.50 -0.43 5.01 16 11 O -0.89 -1.90 10.62 -58.56 -0.62 -2.52 16 12 O -0.90 -7.79 15.47 -58.56 -0.91 -8.70 16 13 N -0.27 0.15 3.53 30.18 0.11 0.26 16 14 N -0.18 0.37 10.85 -10.60 -0.12 0.26 16 15 C -0.04 0.22 8.08 -4.15 -0.03 0.19 16 16 C 0.20 -1.10 7.83 -80.66 -0.63 -1.73 16 17 N -0.80 6.66 9.00 34.15 0.31 6.96 16 18 C -0.20 0.43 10.95 -17.85 -0.20 0.23 16 19 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 20 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 21 H 0.08 0.24 5.09 -51.93 -0.26 -0.02 16 22 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.06 0.29 6.90 -51.93 -0.36 -0.07 16 24 H 0.11 0.01 7.84 -51.92 -0.41 -0.40 16 25 H 0.32 0.52 8.53 -40.82 -0.35 0.17 16 26 H 0.42 -1.30 9.03 67.38 0.61 -0.69 16 27 H 0.16 -1.38 8.14 -51.92 -0.42 -1.80 16 28 H 0.17 -1.27 8.14 -51.93 -0.42 -1.69 16 29 H 0.42 -3.78 8.95 -40.82 -0.37 -4.15 16 30 H 0.42 -4.35 8.95 -40.82 -0.37 -4.72 16 31 H 0.18 -0.38 8.06 -52.49 -0.42 -0.80 16 LS Contribution 264.87 15.07 3.99 3.99 Total: 0.00 -11.73 264.87 -5.17 -16.90 By element: Atomic # 1 Polarization: -14.95 SS G_CDS: -2.92 Total: -17.88 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: -0.76 Total: -3.31 kcal Atomic # 7 Polarization: 4.98 SS G_CDS: 1.04 Total: 6.03 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: -1.53 Total: -11.21 kcal Atomic # 14 Polarization: 5.04 SS G_CDS: -4.57 Total: 0.47 kcal Atomic # 16 Polarization: 5.44 SS G_CDS: -0.43 Total: 5.01 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -11.73 -5.17 -16.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725575014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.979 kcal (2) G-P(sol) polarization free energy of solvation -11.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds