Wall clock time and date at job start Mon Mar 30 2020 03:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46795 * 2 1 4 4 C 1.50706 * 109.47163 * 185.00275 * 3 2 1 5 5 N 1.27936 * 120.00444 * 124.72414 * 4 3 2 6 6 Si 1.86803 * 119.99620 * 304.99983 * 4 3 2 7 7 H 1.48501 * 109.47085 * 89.99884 * 6 4 3 8 8 H 1.48497 * 109.46789 * 209.99894 * 6 4 3 9 9 H 1.48495 * 109.47179 * 329.99687 * 6 4 3 10 10 S 1.81405 * 109.47227 * 65.00126 * 3 2 1 11 11 O 1.52194 * 108.33139 * 297.78618 * 10 3 2 12 12 O 1.42097 * 114.64792 * 58.89433 * 10 3 2 13 13 N 1.65598 * 108.33030 * 179.97438 * 10 3 2 14 14 N 1.23274 * 122.50391 * 359.72057 * 13 10 3 15 15 C 1.47314 * 107.95143 * 179.86035 * 14 13 10 16 16 C 1.51920 * 102.79304 * 0.35933 * 15 14 13 17 17 N 1.37146 * 128.20047 * 179.77315 * 16 15 14 18 18 C 1.33564 * 122.49755 * 179.97438 * 13 10 3 19 19 H 1.09001 * 109.47320 * 59.99889 * 1 2 3 20 20 H 1.08998 * 109.46664 * 180.02562 * 1 2 3 21 21 H 1.08995 * 109.46897 * 299.99628 * 1 2 3 22 22 H 1.08999 * 109.47379 * 240.00388 * 2 1 3 23 23 H 1.09001 * 109.47320 * 120.00111 * 2 1 3 24 24 H 1.09004 * 109.47644 * 304.99906 * 3 2 1 25 25 H 0.97004 * 119.99655 * 359.97438 * 5 4 3 26 26 H 0.96707 * 114.00360 * 304.93900 * 11 10 3 27 27 H 1.09008 * 110.92301 * 241.95614 * 15 14 13 28 28 H 1.08997 * 110.57259 * 118.60538 * 15 14 13 29 29 H 0.97004 * 119.99603 * 180.02562 * 17 16 15 30 30 H 0.96993 * 120.00298 * 0.02562 * 17 16 15 31 31 H 1.08000 * 124.66996 * 0.04500 * 18 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5419 1.4444 -0.1239 5 7 4.1054 2.1025 -1.0653 6 14 4.5806 0.4795 1.0925 7 1 4.7885 -0.8992 0.5816 8 1 5.8955 1.1487 1.2606 9 1 3.8834 0.4221 2.4024 10 16 1.5601 2.2535 1.5501 11 8 0.0402 2.2866 1.6224 12 8 2.0499 1.6227 2.7253 13 7 2.1256 3.8097 1.5205 14 7 2.7635 4.2646 0.5688 15 6 3.1010 5.6652 0.8764 16 6 2.4901 5.8638 2.2531 17 7 2.5042 6.9922 3.0325 18 6 1.9288 4.6640 2.5281 19 1 -0.3634 0.5138 -0.8900 20 1 -0.3632 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 1.6054 1.9816 -0.8418 25 1 3.5658 2.6000 -1.6996 26 1 -0.3811 2.7019 0.8574 27 1 2.6489 6.3427 0.1520 28 1 4.1820 5.8001 0.9106 29 1 2.0728 6.9869 3.9014 30 1 2.9456 7.7954 2.7151 31 1 1.3959 4.4290 3.4376 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725575014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:00 Heat of formation + Delta-G solvation = 49.854060 kcal Electronic energy + Delta-G solvation = -17601.693520 eV Core-core repulsion = 14742.871598 eV Total energy + Delta-G solvation = -2858.821922 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.42939 -37.61337 -37.36194 -36.86734 -36.24179 -34.15038 -31.48972 -30.70861 -28.02219 -24.03306 -22.90766 -22.13339 -21.52808 -20.43748 -19.83386 -17.84820 -17.67944 -17.33383 -16.95236 -16.72383 -16.35623 -15.83728 -15.42014 -14.76754 -14.54888 -13.97202 -13.54834 -13.46947 -13.22079 -13.17840 -12.94602 -12.80099 -12.57079 -12.50853 -12.15423 -12.02288 -11.86886 -11.57873 -11.34902 -10.35556 -9.77504 -9.04778 -6.73407 -0.62778 0.97268 1.22985 1.23677 1.54749 1.63808 1.95036 1.99062 2.29851 2.35490 2.92971 3.49811 3.68456 4.08492 4.11740 4.14777 4.24901 4.28169 4.30488 4.55972 4.67962 4.90172 4.96409 5.01150 5.10323 5.21728 5.39506 5.48851 5.98718 6.32716 6.47040 6.70655 7.29196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.103 4.103 3 C -0.565 4.565 4 C 0.022 3.978 5 N -0.646 5.646 6 Si 0.989 3.011 7 H -0.256 1.256 8 H -0.249 1.249 9 H -0.235 1.235 10 S 1.738 4.262 11 O -0.894 6.894 12 O -0.981 6.981 13 N -0.265 5.265 14 N -0.176 5.176 15 C -0.044 4.044 16 C 0.244 3.756 17 N -0.776 5.776 18 C -0.244 4.244 19 H 0.080 0.920 20 H 0.052 0.948 21 H 0.069 0.931 22 H 0.056 0.944 23 H 0.033 0.967 24 H 0.132 0.868 25 H 0.334 0.666 26 H 0.436 0.564 27 H 0.206 0.794 28 H 0.195 0.805 29 H 0.426 0.574 30 H 0.432 0.568 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.991 15.013 -1.776 15.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.142 4.142 3 C -0.667 4.667 4 C -0.227 4.227 5 N -0.260 5.260 6 Si 0.807 3.193 7 H -0.180 1.180 8 H -0.173 1.173 9 H -0.158 1.158 10 S 1.821 4.179 11 O -0.751 6.751 12 O -0.971 6.971 13 N -0.162 5.162 14 N -0.064 5.064 15 C -0.176 4.176 16 C 0.111 3.889 17 N -0.311 5.311 18 C -0.393 4.393 19 H 0.099 0.901 20 H 0.071 0.929 21 H 0.088 0.912 22 H 0.074 0.926 23 H 0.052 0.948 24 H 0.150 0.850 25 H 0.152 0.848 26 H 0.299 0.701 27 H 0.222 0.778 28 H 0.211 0.789 29 H 0.259 0.741 30 H 0.266 0.734 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 0.563 13.528 -1.170 13.590 hybrid contribution -1.602 0.099 0.285 1.631 sum -1.039 13.626 -0.885 13.694 Atomic orbital electron populations 1.22186 0.94751 1.02636 1.03866 1.21138 0.96784 0.95663 1.00653 1.29876 0.99378 1.05465 1.31955 1.29925 0.96341 0.97077 0.99313 1.69272 1.44602 1.07948 1.04145 0.84633 0.78302 0.78430 0.77888 1.18039 1.17252 1.15798 1.80836 0.71865 0.82608 0.82635 1.85161 1.54011 1.80999 1.54962 1.92803 1.75752 1.77638 1.50902 1.64264 1.14985 1.30710 1.06221 1.78359 1.02351 1.08833 1.16812 1.24425 1.06675 0.93738 0.92784 1.21568 0.87596 0.87325 0.92403 1.41741 1.57624 1.10887 1.20852 1.23085 1.20531 0.93216 1.02424 0.90148 0.92860 0.91231 0.92551 0.94841 0.84963 0.84805 0.70066 0.77761 0.78884 0.74122 0.73374 0.81495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.13 9.54 71.98 0.69 -0.44 16 2 C -0.10 -1.00 4.82 30.60 0.15 -0.85 16 3 C -0.57 -3.64 2.30 29.85 0.07 -3.57 16 4 C 0.02 0.20 4.02 88.68 0.36 0.55 16 5 N -0.65 -4.36 13.23 24.11 0.32 -4.04 16 6 Si 0.99 13.22 26.89 68.60 1.84 15.07 16 7 H -0.26 -3.46 7.11 99.48 0.71 -2.75 16 8 H -0.25 -3.07 7.11 99.48 0.71 -2.37 16 9 H -0.24 -4.52 5.49 99.48 0.55 -3.97 16 10 S 1.74 14.93 3.98 -56.49 -0.22 14.70 16 11 O -0.89 -5.69 10.62 -126.68 -1.34 -7.04 16 12 O -0.98 -21.52 15.47 -126.68 -1.96 -23.48 16 13 N -0.27 0.22 3.53 -58.42 -0.21 0.01 16 14 N -0.18 1.02 10.85 -187.46 -2.03 -1.02 16 15 C -0.04 0.71 8.08 85.87 0.69 1.40 16 16 C 0.24 -3.35 7.83 41.44 0.32 -3.02 16 17 N -0.78 15.64 9.00 -45.87 -0.41 15.23 16 18 C -0.24 1.07 10.95 83.75 0.92 1.99 16 19 H 0.08 0.09 8.14 -2.39 -0.02 0.08 16 20 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 21 H 0.07 0.59 5.09 -2.39 -0.01 0.57 16 22 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.03 0.47 6.90 -2.39 -0.02 0.46 16 24 H 0.13 0.00 7.84 -2.39 -0.02 -0.02 16 25 H 0.33 0.72 8.53 -92.71 -0.79 -0.07 16 26 H 0.44 -2.24 9.03 -87.92 -0.79 -3.04 16 27 H 0.21 -4.85 8.14 -2.38 -0.02 -4.87 16 28 H 0.20 -3.90 8.14 -2.39 -0.02 -3.92 16 29 H 0.43 -8.92 8.95 -92.70 -0.83 -9.75 16 30 H 0.43 -11.02 8.95 -92.71 -0.83 -11.85 16 31 H 0.17 -0.42 8.06 -2.91 -0.02 -0.44 16 Total: 0.00 -33.38 264.87 -2.28 -35.66 By element: Atomic # 1 Polarization: -39.69 SS G_CDS: -1.45 Total: -41.14 kcal Atomic # 6 Polarization: -7.14 SS G_CDS: 3.19 Total: -3.95 kcal Atomic # 7 Polarization: 12.52 SS G_CDS: -2.33 Total: 10.18 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -3.30 Total: -30.52 kcal Atomic # 14 Polarization: 13.22 SS G_CDS: 1.84 Total: 15.07 kcal Atomic # 16 Polarization: 14.93 SS G_CDS: -0.22 Total: 14.70 kcal Total: -33.38 -2.28 -35.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725575014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.513 kcal (2) G-P(sol) polarization free energy of solvation -33.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds