Wall clock time and date at job start Mon Mar 30 2020 03:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 C 1.50697 * 109.47351 * 173.42771 * 3 2 1 5 5 N 1.27944 * 119.99965 * 124.99816 * 4 3 2 6 6 Si 1.86801 * 120.00179 * 305.00371 * 4 3 2 7 7 H 1.48497 * 109.47231 * 89.99570 * 6 4 3 8 8 H 1.48497 * 109.46813 * 209.99824 * 6 4 3 9 9 H 1.48503 * 109.46843 * 329.99944 * 6 4 3 10 10 S 1.81403 * 109.47013 * 293.43286 * 3 2 1 11 11 O 1.52201 * 108.33089 * 298.34032 * 10 3 2 12 12 O 1.42096 * 114.65473 * 59.45160 * 10 3 2 13 13 N 1.65608 * 108.33047 * 180.55818 * 10 3 2 14 14 N 1.23338 * 122.73552 * 349.61724 * 13 10 3 15 15 C 1.47286 * 107.74644 * 179.97438 * 14 13 10 16 16 H 1.09004 * 110.71001 * 241.62332 * 15 14 13 17 17 N 1.46898 * 110.71175 * 118.37809 * 15 14 13 18 18 C 1.51845 * 102.98909 * 359.97438 * 15 14 13 19 19 C 1.33474 * 103.92784 * 359.97438 * 18 15 14 20 20 H 1.09002 * 109.47534 * 59.52824 * 1 2 3 21 21 H 1.09008 * 109.47408 * 179.52817 * 1 2 3 22 22 H 1.09000 * 109.47433 * 299.52541 * 1 2 3 23 23 H 1.08999 * 109.46949 * 240.00172 * 2 1 3 24 24 H 1.09002 * 109.47160 * 120.00391 * 2 1 3 25 25 H 1.09003 * 109.46856 * 53.42835 * 3 2 1 26 26 H 0.97003 * 120.00411 * 180.02562 * 5 4 3 27 27 H 0.96700 * 114.00531 * 304.94209 * 11 10 3 28 28 H 1.00898 * 111.00465 * 61.45200 * 17 15 14 29 29 H 1.00897 * 111.00566 * 185.40604 * 17 15 14 30 30 H 1.08000 * 128.03311 * 179.97438 * 18 15 14 31 31 H 1.07993 * 124.59587 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5382 1.4456 0.1626 5 7 4.2734 2.0473 -0.6943 6 14 4.3219 0.5708 1.6152 7 1 4.6138 -0.8376 1.2461 8 1 5.5856 1.2581 1.9838 9 1 3.3891 0.5966 2.7705 10 16 1.6003 2.2392 -1.5692 11 8 2.2830 1.4812 -2.6988 12 8 0.2062 2.2853 -1.8405 13 7 2.1778 3.7912 -1.5451 14 7 2.6280 4.3196 -0.5256 15 6 3.0448 5.6881 -0.8758 16 1 4.1151 5.8181 -0.7152 17 7 2.2787 6.6775 -0.1063 18 6 2.7091 5.7794 -2.3539 19 6 2.1962 4.5812 -2.6415 20 1 -0.3634 0.5211 -0.8857 21 1 -0.3634 -1.0277 -0.0085 22 1 -0.3634 0.5064 0.8942 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.5838 1.9891 0.8254 26 1 5.2378 2.0491 -0.5899 27 1 3.2412 1.4009 -2.5958 28 1 2.4373 6.5671 0.8840 29 1 2.4974 7.6161 -0.4050 30 1 2.8520 6.6190 -3.0181 31 1 1.8424 4.2839 -3.6175 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000725581562.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:02 Heat of formation + Delta-G solvation = 74.556519 kcal Electronic energy + Delta-G solvation = -17677.370809 eV Core-core repulsion = 14819.620066 eV Total energy + Delta-G solvation = -2857.750743 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.32581 -38.08857 -37.23598 -36.48747 -35.48701 -34.50724 -32.51400 -29.46308 -28.48917 -23.36827 -23.05063 -22.53436 -21.12228 -20.62599 -19.83139 -18.36919 -17.73673 -16.78240 -16.73568 -16.32795 -16.24604 -15.62899 -15.23164 -14.80459 -14.64790 -14.48549 -14.21161 -13.92666 -13.53251 -13.10703 -12.96199 -12.71667 -12.46256 -12.28724 -12.09670 -12.08243 -11.85155 -11.33824 -10.88579 -10.70070 -10.22186 -9.94031 -6.80202 -1.11923 0.70608 1.00117 1.10587 1.38088 1.54958 1.67848 1.86231 2.09897 2.87042 3.04531 3.34322 3.42949 3.66686 3.82465 3.96390 4.16358 4.26994 4.31362 4.45923 4.59297 4.83792 4.93749 4.98759 5.05669 5.21389 5.37182 5.58795 5.60678 5.98033 6.02262 6.59357 6.71806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.101 4.101 3 C -0.531 4.531 4 C 0.074 3.926 5 N -0.684 5.684 6 Si 0.921 3.079 7 H -0.239 1.239 8 H -0.248 1.248 9 H -0.231 1.231 10 S 1.895 4.105 11 O -0.893 6.893 12 O -0.906 6.906 13 N -0.329 5.329 14 N -0.146 5.146 15 C 0.174 3.826 16 H 0.104 0.896 17 N -0.809 5.809 18 C -0.137 4.137 19 C -0.054 4.054 20 H 0.078 0.922 21 H 0.060 0.940 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.063 0.937 25 H 0.135 0.865 26 H 0.345 0.655 27 H 0.433 0.567 28 H 0.361 0.639 29 H 0.363 0.637 30 H 0.176 0.824 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.500 4.521 1.502 8.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.140 4.140 3 C -0.634 4.634 4 C -0.174 4.174 5 N -0.301 5.301 6 Si 0.737 3.263 7 H -0.162 1.162 8 H -0.171 1.171 9 H -0.153 1.153 10 S 1.982 4.018 11 O -0.747 6.747 12 O -0.891 6.891 13 N -0.238 5.238 14 N -0.049 5.049 15 C -0.028 4.028 16 H 0.121 0.879 17 N -0.346 5.346 18 C -0.169 4.169 19 C -0.176 4.176 20 H 0.096 0.904 21 H 0.079 0.921 22 H 0.080 0.920 23 H 0.082 0.918 24 H 0.082 0.918 25 H 0.153 0.847 26 H 0.163 0.837 27 H 0.296 0.704 28 H 0.176 0.824 29 H 0.179 0.821 30 H 0.193 0.807 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 4.936 3.422 1.024 6.093 hybrid contribution 1.724 0.070 0.386 1.768 sum 6.660 3.492 1.410 7.651 Atomic orbital electron populations 1.22126 0.94671 1.02739 1.04090 1.21196 0.96772 0.93632 1.02402 1.28768 0.96316 1.06931 1.31373 1.29507 0.96914 0.91645 0.99344 1.67818 1.12889 1.18207 1.31168 0.85841 0.80365 0.80986 0.79067 1.16205 1.17138 1.15338 1.65822 0.84187 0.75062 0.76754 1.85091 1.32573 1.85911 1.71124 1.93038 1.34265 1.80965 1.80873 1.63138 1.33338 1.22321 1.05022 1.78119 1.11888 1.05207 1.09654 1.23241 0.98203 0.90139 0.91252 0.87930 1.58382 1.60633 1.06293 1.09294 1.25377 0.95809 0.99359 0.96363 1.23920 1.02511 0.93941 0.97259 0.90355 0.92089 0.91987 0.91763 0.91815 0.84743 0.83738 0.70368 0.82428 0.82148 0.80673 0.80192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.57 9.72 37.16 0.36 -0.21 16 2 C -0.10 -0.17 5.11 -26.73 -0.14 -0.31 16 3 C -0.53 -0.60 2.14 -27.89 -0.06 -0.66 16 4 C 0.07 -0.06 4.90 -13.90 -0.07 -0.13 16 5 N -0.68 1.30 9.50 56.23 0.53 1.84 16 6 Si 0.92 -1.01 27.69 -169.99 -4.71 -5.71 16 7 H -0.24 0.07 7.11 56.52 0.40 0.48 16 8 H -0.25 0.23 7.11 56.52 0.40 0.63 16 9 H -0.23 0.05 7.11 56.52 0.40 0.45 16 10 S 1.90 6.18 3.80 -107.50 -0.41 5.77 16 11 O -0.89 -2.82 13.53 -58.55 -0.79 -3.62 16 12 O -0.91 -7.75 15.84 -58.55 -0.93 -8.67 16 13 N -0.33 -0.25 3.14 30.14 0.09 -0.15 16 14 N -0.15 0.06 10.49 -7.47 -0.08 -0.02 16 15 C 0.17 -0.45 5.00 -126.93 -0.63 -1.09 16 16 H 0.10 -0.46 8.14 -51.93 -0.42 -0.89 16 17 N -0.81 2.54 9.53 -7.55 -0.07 2.47 16 18 C -0.14 0.40 11.12 -35.41 -0.39 0.00 16 19 C -0.05 0.03 10.97 -17.76 -0.19 -0.16 16 20 H 0.08 0.46 5.47 -51.93 -0.28 0.17 16 21 H 0.06 0.13 8.14 -51.92 -0.42 -0.29 16 22 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 23 H 0.06 0.10 8.14 -51.93 -0.42 -0.33 16 24 H 0.06 0.01 6.34 -51.93 -0.33 -0.32 16 25 H 0.13 0.03 8.14 -51.92 -0.42 -0.39 16 26 H 0.35 -1.29 8.23 -40.82 -0.34 -1.62 16 27 H 0.43 -0.13 7.18 67.37 0.48 0.35 16 28 H 0.36 -1.51 9.08 -39.29 -0.36 -1.86 16 29 H 0.36 -1.97 9.06 -39.29 -0.36 -2.33 16 30 H 0.18 -1.01 8.06 -52.49 -0.42 -1.44 16 31 H 0.18 -0.32 8.06 -52.49 -0.42 -0.75 16 LS Contribution 265.98 15.07 4.01 4.01 Total: 0.00 -8.63 265.98 -6.41 -15.04 By element: Atomic # 1 Polarization: -5.46 SS G_CDS: -2.93 Total: -8.40 kcal Atomic # 6 Polarization: -1.43 SS G_CDS: -1.13 Total: -2.56 kcal Atomic # 7 Polarization: 3.66 SS G_CDS: 0.48 Total: 4.14 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: -1.72 Total: -12.29 kcal Atomic # 14 Polarization: -1.01 SS G_CDS: -4.71 Total: -5.71 kcal Atomic # 16 Polarization: 6.18 SS G_CDS: -0.41 Total: 5.77 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -8.63 -6.41 -15.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725581562.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.598 kcal (2) G-P(sol) polarization free energy of solvation -8.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds