Wall clock time and date at job start Mon Mar 30 2020 03:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47235 * 2 1 4 4 C 1.50697 * 109.47351 * 173.42771 * 3 2 1 5 5 N 1.27944 * 119.99965 * 124.99816 * 4 3 2 6 6 Si 1.86801 * 120.00179 * 305.00371 * 4 3 2 7 7 H 1.48497 * 109.47231 * 89.99570 * 6 4 3 8 8 H 1.48497 * 109.46813 * 209.99824 * 6 4 3 9 9 H 1.48503 * 109.46843 * 329.99944 * 6 4 3 10 10 S 1.81403 * 109.47013 * 293.43286 * 3 2 1 11 11 O 1.52201 * 108.33089 * 298.34032 * 10 3 2 12 12 O 1.42096 * 114.65473 * 59.45160 * 10 3 2 13 13 N 1.65608 * 108.33047 * 180.55818 * 10 3 2 14 14 N 1.23338 * 122.73552 * 349.61724 * 13 10 3 15 15 C 1.47286 * 107.74644 * 179.97438 * 14 13 10 16 16 H 1.09004 * 110.71001 * 241.62332 * 15 14 13 17 17 N 1.46898 * 110.71175 * 118.37809 * 15 14 13 18 18 C 1.51845 * 102.98909 * 359.97438 * 15 14 13 19 19 C 1.33474 * 103.92784 * 359.97438 * 18 15 14 20 20 H 1.09002 * 109.47534 * 59.52824 * 1 2 3 21 21 H 1.09008 * 109.47408 * 179.52817 * 1 2 3 22 22 H 1.09000 * 109.47433 * 299.52541 * 1 2 3 23 23 H 1.08999 * 109.46949 * 240.00172 * 2 1 3 24 24 H 1.09002 * 109.47160 * 120.00391 * 2 1 3 25 25 H 1.09003 * 109.46856 * 53.42835 * 3 2 1 26 26 H 0.97003 * 120.00411 * 180.02562 * 5 4 3 27 27 H 0.96700 * 114.00531 * 304.94209 * 11 10 3 28 28 H 1.00898 * 111.00465 * 61.45200 * 17 15 14 29 29 H 1.00897 * 111.00566 * 185.40604 * 17 15 14 30 30 H 1.08000 * 128.03311 * 179.97438 * 18 15 14 31 31 H 1.07993 * 124.59587 * 179.97438 * 19 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5382 1.4456 0.1626 5 7 4.2734 2.0473 -0.6943 6 14 4.3219 0.5708 1.6152 7 1 4.6138 -0.8376 1.2461 8 1 5.5856 1.2581 1.9838 9 1 3.3891 0.5966 2.7705 10 16 1.6003 2.2392 -1.5692 11 8 2.2830 1.4812 -2.6988 12 8 0.2062 2.2853 -1.8405 13 7 2.1778 3.7912 -1.5451 14 7 2.6280 4.3196 -0.5256 15 6 3.0448 5.6881 -0.8758 16 1 4.1151 5.8181 -0.7152 17 7 2.2787 6.6775 -0.1063 18 6 2.7091 5.7794 -2.3539 19 6 2.1962 4.5812 -2.6415 20 1 -0.3634 0.5211 -0.8857 21 1 -0.3634 -1.0277 -0.0085 22 1 -0.3634 0.5064 0.8942 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 1.5838 1.9891 0.8254 26 1 5.2378 2.0491 -0.5899 27 1 3.2412 1.4009 -2.5958 28 1 2.4373 6.5671 0.8840 29 1 2.4974 7.6161 -0.4050 30 1 2.8520 6.6190 -3.0181 31 1 1.8424 4.2839 -3.6175 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000725581562.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:02 Heat of formation + Delta-G solvation = 67.880335 kcal Electronic energy + Delta-G solvation = -17677.660310 eV Core-core repulsion = 14819.620066 eV Total energy + Delta-G solvation = -2858.040244 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 248.086 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.42899 -38.02471 -37.17340 -36.56840 -35.38846 -34.50488 -32.50733 -29.37883 -28.51889 -23.35149 -23.02771 -22.49260 -21.01134 -20.60355 -19.84414 -18.29198 -17.70815 -16.71202 -16.65302 -16.28306 -16.14414 -15.58728 -15.21043 -14.82277 -14.63333 -14.42515 -14.18793 -13.96361 -13.46053 -13.18529 -13.01807 -12.76315 -12.52075 -12.36334 -12.16157 -12.12193 -11.90751 -11.23927 -10.89303 -10.63548 -10.01702 -9.81706 -6.81582 -1.00220 0.82475 1.09733 1.16775 1.47080 1.56317 1.78276 1.95075 2.15507 2.89969 3.12592 3.45182 3.54336 3.73449 3.99508 4.02158 4.14075 4.19776 4.39143 4.46758 4.64861 4.80763 4.84304 4.96604 5.07492 5.09394 5.33640 5.38369 5.85844 6.13087 6.27214 6.59494 6.95660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.103 4.103 3 C -0.536 4.536 4 C 0.076 3.924 5 N -0.677 5.677 6 Si 0.946 3.054 7 H -0.253 1.253 8 H -0.243 1.243 9 H -0.247 1.247 10 S 1.819 4.181 11 O -0.902 6.902 12 O -0.983 6.983 13 N -0.297 5.297 14 N -0.105 5.105 15 C 0.147 3.853 16 H 0.154 0.846 17 N -0.814 5.814 18 C -0.081 4.081 19 C -0.106 4.106 20 H 0.048 0.952 21 H 0.065 0.935 22 H 0.064 0.936 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.131 0.869 26 H 0.356 0.644 27 H 0.437 0.563 28 H 0.370 0.630 29 H 0.380 0.620 30 H 0.216 0.784 31 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.829 7.584 1.925 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.142 4.142 3 C -0.639 4.639 4 C -0.172 4.172 5 N -0.295 5.295 6 Si 0.764 3.236 7 H -0.177 1.177 8 H -0.166 1.166 9 H -0.170 1.170 10 S 1.905 4.095 11 O -0.760 6.760 12 O -0.971 6.971 13 N -0.205 5.205 14 N -0.004 5.004 15 C -0.055 4.055 16 H 0.171 0.829 17 N -0.355 5.355 18 C -0.112 4.112 19 C -0.229 4.229 20 H 0.067 0.933 21 H 0.084 0.916 22 H 0.084 0.916 23 H 0.076 0.924 24 H 0.093 0.907 25 H 0.149 0.851 26 H 0.175 0.825 27 H 0.302 0.698 28 H 0.186 0.814 29 H 0.199 0.801 30 H 0.233 0.767 31 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 7.308 6.549 1.484 9.924 hybrid contribution 1.150 -0.330 0.294 1.232 sum 8.457 6.219 1.778 10.647 Atomic orbital electron populations 1.22120 0.96353 1.02515 1.02818 1.21198 0.95417 0.95042 1.02527 1.28641 0.97376 1.05827 1.32014 1.29352 0.96053 0.92290 0.99512 1.67764 1.13478 1.17800 1.30450 0.85500 0.79837 0.80089 0.78199 1.17741 1.16561 1.16963 1.74515 0.81938 0.76015 0.77003 1.85047 1.32964 1.86381 1.71567 1.92788 1.40050 1.82005 1.82272 1.64625 1.26372 1.24544 1.04917 1.78169 1.03455 1.06861 1.11870 1.23823 1.00753 0.89016 0.91876 0.82949 1.58463 1.59966 1.07081 1.09985 1.26030 0.90309 0.98576 0.96287 1.24342 1.05510 0.94897 0.98190 0.93256 0.91609 0.91644 0.92390 0.90704 0.85087 0.82532 0.69775 0.81389 0.80128 0.76743 0.79893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 52. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.91 9.72 71.98 0.70 -1.21 16 2 C -0.10 -0.68 5.11 30.59 0.16 -0.53 16 3 C -0.54 -2.54 2.14 29.85 0.06 -2.48 16 4 C 0.08 -0.07 4.90 88.67 0.43 0.37 16 5 N -0.68 2.71 9.50 24.11 0.23 2.93 16 6 Si 0.95 -1.67 27.69 68.60 1.90 0.23 16 7 H -0.25 -0.10 7.11 99.48 0.71 0.60 16 8 H -0.24 0.70 7.11 99.48 0.71 1.40 16 9 H -0.25 -0.13 7.11 99.48 0.71 0.57 16 10 S 1.82 17.45 3.80 -56.49 -0.21 17.23 16 11 O -0.90 -8.82 13.53 -126.68 -1.71 -10.54 16 12 O -0.98 -21.90 15.84 -126.68 -2.01 -23.91 16 13 N -0.30 -0.46 3.14 -58.56 -0.18 -0.65 16 14 N -0.10 0.26 10.49 -177.55 -1.86 -1.60 16 15 C 0.15 -1.40 5.00 128.74 0.64 -0.75 16 16 H 0.15 -2.35 8.14 -2.38 -0.02 -2.37 16 17 N -0.81 8.37 9.53 -177.80 -1.69 6.68 16 18 C -0.08 0.80 11.12 24.97 0.28 1.07 16 19 C -0.11 0.24 10.97 83.10 0.91 1.15 16 20 H 0.05 0.85 5.47 -2.39 -0.01 0.84 16 21 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 22 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 23 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 24 H 0.07 0.20 6.34 -2.39 -0.02 0.19 16 25 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.36 -3.03 8.23 -92.71 -0.76 -3.79 16 27 H 0.44 0.87 7.18 -87.93 -0.63 0.24 16 28 H 0.37 -4.46 9.08 -89.70 -0.81 -5.27 16 29 H 0.38 -5.91 9.06 -89.70 -0.81 -6.72 16 30 H 0.22 -3.75 8.06 -2.91 -0.02 -3.78 16 31 H 0.18 -0.53 8.06 -2.91 -0.02 -0.56 16 Total: 0.00 -25.37 265.98 -3.43 -28.81 By element: Atomic # 1 Polarization: -15.74 SS G_CDS: -1.07 Total: -16.81 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 3.19 Total: -2.37 kcal Atomic # 7 Polarization: 10.87 SS G_CDS: -3.51 Total: 7.36 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -3.72 Total: -34.44 kcal Atomic # 14 Polarization: -1.67 SS G_CDS: 1.90 Total: 0.23 kcal Atomic # 16 Polarization: 17.45 SS G_CDS: -0.21 Total: 17.23 kcal Total: -25.37 -3.43 -28.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000725581562.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.686 kcal (2) G-P(sol) polarization free energy of solvation -25.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds